Wall clock time and date at job start Tue Mar 31 2020 16:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99710 * 2 1 4 4 C 1.50699 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.35134 * 125.62022 * 89.99546 * 4 3 2 6 6 C 1.40366 * 107.11365 * 179.97438 * 5 4 3 7 7 C 1.36543 * 106.71226 * 0.02562 * 6 5 4 8 8 C 1.46652 * 125.98635 * 180.02562 * 7 6 5 9 9 O 1.21694 * 120.00360 * 6.92105 * 8 7 6 10 10 N 1.34779 * 119.99421 * 186.92045 * 8 7 6 11 11 C 1.46927 * 120.62705 * 186.11545 * 10 8 7 12 12 C 1.53627 * 108.54312 * 126.36898 * 11 10 8 13 13 C 1.53037 * 109.24187 * 54.85599 * 12 11 10 14 14 H 1.09003 * 109.45129 * 58.52804 * 13 12 11 15 15 N 1.46499 * 109.46174 * 178.48791 * 13 12 11 16 16 C 1.36930 * 120.00152 * 275.06982 * 15 13 12 17 17 H 1.08001 * 120.00474 * 0.02562 * 16 15 13 18 18 C 1.38823 * 120.00057 * 179.97438 * 16 15 13 19 19 N 1.31612 * 119.99668 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47223 * 60.00103 * 20 18 16 22 22 H 1.48507 * 109.46676 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47117 * 299.99717 * 20 18 16 24 24 C 1.53040 * 109.53955 * 298.51084 * 13 12 11 25 25 H 1.09000 * 109.52488 * 301.39812 * 24 13 12 26 26 C 1.52996 * 109.49831 * 181.31499 * 24 13 12 27 27 C 1.46927 * 120.63668 * 6.39417 * 10 8 7 28 28 O 1.33936 * 125.61666 * 269.96932 * 4 3 2 29 29 H 1.09002 * 109.46907 * 60.00864 * 1 2 3 30 30 H 1.08999 * 109.46498 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47386 * 300.00352 * 1 2 3 32 32 H 1.08995 * 109.47654 * 59.99357 * 3 2 1 33 33 H 1.09001 * 109.46942 * 299.99256 * 3 2 1 34 34 H 1.07998 * 126.43762 * 359.71753 * 5 4 3 35 35 H 1.08004 * 126.63903 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.58873 * 246.20458 * 11 10 8 37 37 H 1.08998 * 109.59014 * 6.62668 * 11 10 8 38 38 H 1.08993 * 109.63559 * 294.86381 * 12 11 10 39 39 H 1.09001 * 109.45624 * 174.73777 * 12 11 10 40 40 H 0.97004 * 119.99600 * 95.06636 * 15 13 12 41 41 H 0.97003 * 119.99852 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.47103 * 300.16135 * 26 24 13 43 43 H 1.08998 * 109.47039 * 60.16443 * 26 24 13 44 44 H 1.08997 * 109.47125 * 180.16122 * 26 24 13 45 45 H 1.08999 * 109.57915 * 353.37648 * 27 10 8 46 46 H 1.08999 * 109.58312 * 113.65450 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2975 1.1240 -1.0975 6 6 5.6243 1.0196 -0.6514 7 6 5.5811 1.0231 0.7133 8 6 6.7363 0.9328 1.6122 9 8 7.8649 0.9718 1.1587 10 7 6.5479 0.8065 2.9408 11 6 7.6886 0.8491 3.8659 12 6 7.4114 1.9174 4.9346 13 6 6.0684 1.6221 5.6064 14 1 6.0961 0.6275 6.0515 15 7 5.8161 2.6175 6.6513 16 6 6.3354 2.4398 7.9058 17 1 6.9313 1.5662 8.1250 18 6 6.0967 3.3833 8.8958 19 7 5.3718 4.4487 8.6284 20 14 6.8057 3.1413 10.6070 21 1 8.2869 3.0749 10.5243 22 1 6.4093 4.2809 11.4727 23 1 6.2849 1.8760 11.1842 24 6 4.9500 1.6830 4.5635 25 1 4.9373 2.6696 4.1002 26 6 3.6042 1.4201 5.2420 27 6 5.1988 0.6177 3.4911 28 8 4.2897 1.1257 1.0898 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.9659 1.1458 -2.1251 35 1 6.5081 0.9492 -1.2683 36 1 7.8101 -0.1243 4.3412 37 1 8.5948 1.1056 3.3172 38 1 7.3761 2.9017 4.4679 39 1 8.2043 1.8974 5.6822 40 1 5.2812 3.4024 6.4544 41 1 5.2053 5.1081 9.3201 42 1 3.6178 0.4339 5.7061 43 1 3.4277 2.1783 6.0049 44 1 2.8083 1.4608 4.4984 45 1 4.4617 0.7216 2.6949 46 1 5.1206 -0.3751 3.9342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036101781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:30 Heat of formation + Delta-G solvation = -39.581885 kcal Electronic energy + Delta-G solvation = -27979.566707 eV Core-core repulsion = 24065.048625 eV Total energy + Delta-G solvation = -3914.518082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.96993 -39.88473 -38.22315 -37.73370 -34.69122 -33.38245 -32.64823 -31.99067 -31.21271 -29.50195 -27.65825 -26.37236 -26.04772 -24.86677 -23.20664 -22.23558 -21.53184 -21.32038 -20.22367 -19.38371 -17.73697 -17.21214 -16.95971 -16.73280 -16.21930 -16.08553 -15.84097 -14.99525 -14.87736 -14.37785 -14.24857 -13.89757 -13.79696 -13.41021 -13.24781 -13.20506 -13.02480 -12.92771 -12.46317 -12.33588 -12.16104 -11.85769 -11.58177 -11.48155 -11.20399 -10.91372 -10.79904 -10.61037 -10.41314 -10.27087 -10.22659 -10.22291 -10.14734 -9.73507 -9.58730 -8.91656 -8.88249 -8.47203 -6.97044 -5.78082 -3.06587 0.83435 2.04222 2.30724 3.04061 3.14407 3.42906 3.47816 3.48274 3.58558 4.28444 4.47949 4.57248 4.66277 4.79466 4.82337 4.95094 4.99894 5.07444 5.18215 5.29671 5.33212 5.37093 5.43411 5.50049 5.56137 5.62043 5.68969 5.73116 5.81899 6.00998 6.09439 6.14340 6.17347 6.30591 6.38098 6.41813 6.47785 6.60206 6.62881 6.74104 6.83190 6.89513 7.05436 7.39889 7.68197 8.03643 8.40227 9.51678 10.08777 10.43938 11.44412 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.003228 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.617845 B = 8671.203741 C =10051.187960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.138 3.862 4 C 0.000 4.000 5 C -0.192 4.192 6 C -0.127 4.127 7 C -0.058 4.058 8 C 0.598 3.402 9 O -0.528 6.528 10 N -0.594 5.594 11 C 0.113 3.887 12 C -0.151 4.151 13 C 0.183 3.817 14 H 0.049 0.951 15 N -0.720 5.720 16 C -0.238 4.238 17 H 0.069 0.931 18 C -0.012 4.012 19 N -0.933 5.933 20 Si 0.905 3.095 21 H -0.286 1.286 22 H -0.292 1.292 23 H -0.286 1.286 24 C -0.108 4.108 25 H 0.070 0.930 26 C -0.135 4.135 27 C 0.098 3.902 28 O -0.144 6.144 29 H 0.044 0.956 30 H 0.090 0.910 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.162 0.838 36 H 0.068 0.932 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.051 0.949 43 H 0.074 0.926 44 H 0.042 0.958 45 H 0.105 0.895 46 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.565 -8.097 -19.966 23.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.062 3.938 4 C -0.051 4.051 5 C -0.211 4.211 6 C -0.147 4.147 7 C -0.110 4.110 8 C 0.386 3.614 9 O -0.407 6.407 10 N -0.325 5.325 11 C -0.009 4.009 12 C -0.192 4.192 13 C 0.073 3.927 14 H 0.067 0.933 15 N -0.360 5.360 16 C -0.370 4.370 17 H 0.087 0.913 18 C -0.208 4.208 19 N -0.581 5.581 20 Si 0.737 3.263 21 H -0.213 1.213 22 H -0.218 1.218 23 H -0.213 1.213 24 C -0.128 4.128 25 H 0.088 0.912 26 C -0.193 4.193 27 C -0.024 4.024 28 O -0.041 6.041 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.066 0.934 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.174 0.826 35 H 0.179 0.821 36 H 0.087 0.913 37 H 0.106 0.894 38 H 0.078 0.922 39 H 0.096 0.904 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.093 0.907 44 H 0.061 0.939 45 H 0.122 0.878 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -7.878 -8.279 -19.669 22.748 hybrid contribution 0.038 0.461 0.792 0.917 sum -7.840 -7.818 -18.877 21.884 Atomic orbital electron populations 1.22816 0.79944 1.03365 1.00423 1.87983 1.20358 1.26514 1.95542 1.20741 0.84214 0.86009 1.02810 1.22397 0.92974 1.04705 0.85057 1.21585 0.92365 1.07567 0.99628 1.21929 0.98536 1.01363 0.92887 1.22230 0.82079 1.12011 0.94685 1.16711 0.86008 0.77364 0.81359 1.90851 1.21903 1.52281 1.75679 1.48093 1.09511 1.69773 1.05131 1.21906 0.88243 1.00107 0.90665 1.22773 1.01796 0.97676 0.96943 1.20216 0.90296 0.94009 0.88218 0.93345 1.42386 1.62240 1.24215 1.07186 1.19180 1.25755 1.04789 0.87228 0.91267 1.24721 1.00757 0.97121 0.98226 1.69646 1.43327 1.11857 1.33288 0.86295 0.78671 0.76865 0.84512 1.21314 1.21762 1.21297 1.21717 0.97067 0.98370 0.95607 0.91190 1.21652 0.94684 1.02715 1.00234 1.22443 0.82534 0.99481 0.97941 1.84236 1.16448 1.70161 1.33216 0.93704 0.89128 0.93436 0.90804 0.89670 0.82605 0.82084 0.91326 0.89432 0.92156 0.90382 0.78237 0.93489 0.92984 0.90662 0.93918 0.87760 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.60 10.69 -35.23 -0.38 -3.98 16 3 C 0.14 1.12 6.46 36.01 0.23 1.35 16 4 C 0.00 0.00 6.94 -35.41 -0.25 -0.24 16 5 C -0.19 -1.95 10.77 -39.89 -0.43 -2.38 16 6 C -0.13 -1.53 10.63 -39.39 -0.42 -1.94 16 7 C -0.06 -0.82 6.83 -36.80 -0.25 -1.07 16 8 C 0.60 9.59 7.65 -12.86 -0.10 9.49 16 9 O -0.53 -9.61 16.32 5.19 0.08 -9.52 16 10 N -0.59 -9.14 2.97 -174.05 -0.52 -9.65 16 11 C 0.11 1.74 6.44 -3.48 -0.02 1.72 16 12 C -0.15 -2.70 5.67 -26.39 -0.15 -2.85 16 13 C 0.18 3.50 2.19 -67.89 -0.15 3.35 16 14 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 15 N -0.72 -17.30 4.41 -53.38 -0.24 -17.54 16 16 C -0.24 -6.41 9.93 -15.06 -0.15 -6.55 16 17 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 18 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -27.64 13.06 55.49 0.72 -26.92 16 20 Si 0.91 22.11 29.55 -169.99 -5.02 17.09 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 22 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 C -0.11 -1.75 2.46 -90.50 -0.22 -1.97 16 25 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 26 C -0.13 -2.12 9.02 37.16 0.34 -1.78 16 27 C 0.10 1.40 5.61 -3.71 -0.02 1.38 16 28 O -0.14 -1.88 7.14 4.99 0.04 -1.84 16 29 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.16 1.13 8.06 -52.49 -0.42 0.70 16 35 H 0.16 1.73 8.06 -52.48 -0.42 1.31 16 36 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 37 H 0.09 1.37 7.04 -51.93 -0.37 1.01 16 38 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.38 9.91 7.50 -40.82 -0.31 9.60 16 41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.07 1.39 7.36 -51.93 -0.38 1.01 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.11 1.43 3.80 -54.99 -0.21 1.22 16 46 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -32.06 376.32 -7.36 -39.42 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -7.15 Total: 7.93 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -0.57 Total: -0.65 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.03 Total: -54.11 kcal Atomic # 8 Polarization: -15.09 SS G_CDS: -0.26 Total: -15.34 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.06 -7.36 -39.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036101781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.165 kcal (2) G-P(sol) polarization free energy of solvation -32.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.225 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds