Wall clock time and date at job start Tue Mar 31 2020 16:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42902 * 113.99710 * 2 1 4 4 C 1.50699 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.35134 * 125.62022 * 89.99546 * 4 3 2 6 6 C 1.40366 * 107.11365 * 179.97438 * 5 4 3 7 7 C 1.36543 * 106.71226 * 0.02562 * 6 5 4 8 8 C 1.46652 * 125.98635 * 180.02562 * 7 6 5 9 9 O 1.21694 * 120.00360 * 6.92105 * 8 7 6 10 10 N 1.34779 * 119.99421 * 186.92045 * 8 7 6 11 11 C 1.46927 * 120.62705 * 186.11545 * 10 8 7 12 12 C 1.53627 * 108.54312 * 126.36898 * 11 10 8 13 13 C 1.53037 * 109.24187 * 54.85599 * 12 11 10 14 14 H 1.09003 * 109.45129 * 58.52804 * 13 12 11 15 15 N 1.46499 * 109.46174 * 178.48791 * 13 12 11 16 16 C 1.36930 * 120.00152 * 275.06982 * 15 13 12 17 17 H 1.08001 * 120.00474 * 0.02562 * 16 15 13 18 18 C 1.38823 * 120.00057 * 179.97438 * 16 15 13 19 19 N 1.31612 * 119.99668 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 119.99923 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47223 * 60.00103 * 20 18 16 22 22 H 1.48507 * 109.46676 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47117 * 299.99717 * 20 18 16 24 24 C 1.53040 * 109.53955 * 298.51084 * 13 12 11 25 25 H 1.09000 * 109.52488 * 301.39812 * 24 13 12 26 26 C 1.52996 * 109.49831 * 181.31499 * 24 13 12 27 27 C 1.46927 * 120.63668 * 6.39417 * 10 8 7 28 28 O 1.33936 * 125.61666 * 269.96932 * 4 3 2 29 29 H 1.09002 * 109.46907 * 60.00864 * 1 2 3 30 30 H 1.08999 * 109.46498 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47386 * 300.00352 * 1 2 3 32 32 H 1.08995 * 109.47654 * 59.99357 * 3 2 1 33 33 H 1.09001 * 109.46942 * 299.99256 * 3 2 1 34 34 H 1.07998 * 126.43762 * 359.71753 * 5 4 3 35 35 H 1.08004 * 126.63903 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.58873 * 246.20458 * 11 10 8 37 37 H 1.08998 * 109.59014 * 6.62668 * 11 10 8 38 38 H 1.08993 * 109.63559 * 294.86381 * 12 11 10 39 39 H 1.09001 * 109.45624 * 174.73777 * 12 11 10 40 40 H 0.97004 * 119.99600 * 95.06636 * 15 13 12 41 41 H 0.97003 * 119.99852 * 180.02562 * 19 18 16 42 42 H 1.09004 * 109.47103 * 300.16135 * 26 24 13 43 43 H 1.08998 * 109.47039 * 60.16443 * 26 24 13 44 44 H 1.08997 * 109.47125 * 180.16122 * 26 24 13 45 45 H 1.08999 * 109.57915 * 353.37648 * 27 10 8 46 46 H 1.08999 * 109.58312 * 113.65450 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2975 1.1240 -1.0975 6 6 5.6243 1.0196 -0.6514 7 6 5.5811 1.0231 0.7133 8 6 6.7363 0.9328 1.6122 9 8 7.8649 0.9718 1.1587 10 7 6.5479 0.8065 2.9408 11 6 7.6886 0.8491 3.8659 12 6 7.4114 1.9174 4.9346 13 6 6.0684 1.6221 5.6064 14 1 6.0961 0.6275 6.0515 15 7 5.8161 2.6175 6.6513 16 6 6.3354 2.4398 7.9058 17 1 6.9313 1.5662 8.1250 18 6 6.0967 3.3833 8.8958 19 7 5.3718 4.4487 8.6284 20 14 6.8057 3.1413 10.6070 21 1 8.2869 3.0749 10.5243 22 1 6.4093 4.2809 11.4727 23 1 6.2849 1.8760 11.1842 24 6 4.9500 1.6830 4.5635 25 1 4.9373 2.6696 4.1002 26 6 3.6042 1.4201 5.2420 27 6 5.1988 0.6177 3.4911 28 8 4.2897 1.1257 1.0898 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8463 -0.8901 34 1 3.9659 1.1458 -2.1251 35 1 6.5081 0.9492 -1.2683 36 1 7.8101 -0.1243 4.3412 37 1 8.5948 1.1056 3.3172 38 1 7.3761 2.9017 4.4679 39 1 8.2043 1.8974 5.6822 40 1 5.2812 3.4024 6.4544 41 1 5.2053 5.1081 9.3201 42 1 3.6178 0.4339 5.7061 43 1 3.4277 2.1783 6.0049 44 1 2.8083 1.4608 4.4984 45 1 4.4617 0.7216 2.6949 46 1 5.1206 -0.3751 3.9342 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036101781.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:29 Heat of formation + Delta-G solvation = -60.270262 kcal Electronic energy + Delta-G solvation = -27980.463822 eV Core-core repulsion = 24065.048625 eV Total energy + Delta-G solvation = -3915.415197 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.88217 -41.14646 -39.14652 -38.78626 -36.29453 -34.41437 -34.17946 -33.35421 -32.27558 -31.15867 -28.44647 -27.64664 -26.90874 -26.30061 -24.64227 -23.52714 -22.64412 -22.38120 -21.42038 -20.73763 -19.23065 -18.62623 -17.88414 -17.71083 -17.11499 -16.91521 -16.75961 -16.59965 -16.06999 -15.74037 -15.54144 -15.42648 -14.97050 -14.72249 -14.47573 -14.29103 -14.12853 -14.04086 -13.59473 -13.52442 -13.14933 -12.93227 -12.82287 -12.80189 -12.71696 -12.43445 -12.33334 -12.20186 -12.06154 -11.87396 -11.67853 -11.50730 -11.15177 -11.03475 -10.86715 -10.70510 -9.97774 -9.59044 -8.97915 -7.91674 -5.19275 -0.14473 1.19605 1.36675 1.48260 1.50340 1.56069 1.91498 2.02606 2.57566 2.95067 3.34729 3.41316 3.69559 3.74676 3.80052 3.87713 4.00683 4.08346 4.16683 4.29947 4.30628 4.32025 4.41765 4.50078 4.57493 4.62164 4.64480 4.66612 4.74249 4.77593 4.83542 4.92824 4.93851 4.98535 5.09393 5.09898 5.25750 5.33871 5.43204 5.48327 5.54333 5.56845 5.81010 6.10610 6.20328 6.29737 6.82651 7.36547 8.11666 8.35754 9.31570 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.015529 B = 0.003228 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1802.617845 B = 8671.203741 C =10051.187960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.136 3.864 4 C 0.001 3.999 5 C -0.190 4.190 6 C -0.119 4.119 7 C -0.093 4.093 8 C 0.596 3.404 9 O -0.559 6.559 10 N -0.597 5.597 11 C 0.121 3.879 12 C -0.140 4.140 13 C 0.179 3.821 14 H 0.050 0.950 15 N -0.729 5.729 16 C -0.234 4.234 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.969 5.969 20 Si 0.968 3.032 21 H -0.281 1.281 22 H -0.299 1.299 23 H -0.277 1.277 24 C -0.097 4.097 25 H 0.056 0.944 26 C -0.127 4.127 27 C 0.106 3.894 28 O -0.156 6.156 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.052 0.948 32 H 0.079 0.921 33 H 0.117 0.883 34 H 0.189 0.811 35 H 0.170 0.830 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.041 0.959 39 H 0.066 0.934 40 H 0.372 0.628 41 H 0.249 0.751 42 H 0.057 0.943 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.117 0.883 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.722 -9.498 -21.590 25.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.061 3.939 4 C -0.051 4.051 5 C -0.208 4.208 6 C -0.139 4.139 7 C -0.144 4.144 8 C 0.386 3.614 9 O -0.440 6.440 10 N -0.328 5.328 11 C -0.001 4.001 12 C -0.181 4.181 13 C 0.071 3.929 14 H 0.068 0.932 15 N -0.368 5.368 16 C -0.366 4.366 17 H 0.094 0.906 18 C -0.266 4.266 19 N -0.620 5.620 20 Si 0.797 3.203 21 H -0.207 1.207 22 H -0.225 1.225 23 H -0.204 1.204 24 C -0.117 4.117 25 H 0.074 0.926 26 C -0.185 4.185 27 C -0.016 4.016 28 O -0.054 6.054 29 H 0.081 0.919 30 H 0.114 0.886 31 H 0.071 0.929 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.206 0.794 35 H 0.187 0.813 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.060 0.940 39 H 0.084 0.916 40 H 0.204 0.796 41 H 0.058 0.942 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.089 0.911 45 H 0.134 0.866 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -9.032 -9.726 -21.315 25.110 hybrid contribution 0.320 0.866 1.162 1.484 sum -8.712 -8.861 -20.153 23.676 Atomic orbital electron populations 1.22996 0.78248 1.04190 1.01584 1.87931 1.22228 1.27167 1.95809 1.20986 0.82267 0.86017 1.04674 1.23123 0.94276 1.03018 0.84639 1.21948 0.91133 1.06718 1.01047 1.22236 0.99913 0.99471 0.92291 1.21916 0.82140 1.15402 0.94952 1.16956 0.86375 0.76550 0.81524 1.90819 1.23236 1.53737 1.76209 1.48135 1.09715 1.69742 1.05167 1.21777 0.88426 0.99952 0.89958 1.22566 1.00579 0.97728 0.97212 1.20425 0.91920 0.92616 0.87972 0.93215 1.42544 1.61935 1.24758 1.07603 1.19556 1.24457 1.04362 0.88232 0.90641 1.25472 1.02011 0.97315 1.01829 1.69804 1.45364 1.12853 1.34010 0.85296 0.78056 0.76618 0.80301 1.20744 1.22517 1.20354 1.21578 0.96336 0.98584 0.95240 0.92593 1.21558 0.95138 1.01787 1.00034 1.22431 0.82382 0.99200 0.97542 1.84137 1.16187 1.70667 1.34406 0.91855 0.88580 0.92950 0.90241 0.86509 0.79420 0.81260 0.89411 0.89642 0.93968 0.91569 0.79640 0.94204 0.92345 0.93951 0.91126 0.86571 0.89497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.58 10.69 -148.98 -1.59 -8.17 16 3 C 0.14 1.78 6.46 71.24 0.46 2.24 16 4 C 0.00 0.01 6.94 24.97 0.17 0.19 16 5 C -0.19 -3.30 10.77 22.07 0.24 -3.06 16 6 C -0.12 -2.66 10.63 22.39 0.24 -2.42 16 7 C -0.09 -2.51 6.83 24.07 0.16 -2.34 16 8 C 0.60 18.91 7.65 86.44 0.66 19.57 16 9 O -0.56 -20.36 16.32 -4.33 -0.07 -20.43 16 10 N -0.60 -17.96 2.97 -822.80 -2.44 -20.40 16 11 C 0.12 3.69 6.44 86.51 0.56 4.24 16 12 C -0.14 -5.06 5.67 30.82 0.17 -4.89 16 13 C 0.18 6.87 2.19 45.02 0.10 6.97 16 14 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16 15 N -0.73 -35.76 4.41 -322.81 -1.42 -37.18 16 16 C -0.23 -12.69 9.93 84.04 0.83 -11.85 16 17 H 0.08 3.92 7.83 -2.91 -0.02 3.90 16 18 C -0.07 -4.20 5.50 84.87 0.47 -3.73 16 19 N -0.97 -58.84 13.06 21.65 0.28 -58.56 16 20 Si 0.97 45.88 29.55 68.60 2.03 47.91 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.69 16 23 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 24 C -0.10 -3.13 2.46 -10.72 -0.03 -3.15 16 25 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 26 C -0.13 -3.89 9.02 71.98 0.65 -3.24 16 27 C 0.11 2.88 5.61 86.36 0.48 3.36 16 28 O -0.16 -3.84 7.14 -5.07 -0.04 -3.87 16 29 H 0.06 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.12 0.77 8.14 -2.39 -0.02 0.76 16 34 H 0.19 1.94 8.06 -2.91 -0.02 1.92 16 35 H 0.17 3.40 8.06 -2.91 -0.02 3.37 16 36 H 0.09 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.09 2.67 7.04 -2.39 -0.02 2.66 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.37 19.86 7.50 -92.71 -0.70 19.16 16 41 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.04 1.58 7.36 -2.39 -0.02 1.56 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.12 3.00 3.80 -50.91 -0.19 2.80 16 46 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -70.20 376.32 3.27 -66.92 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.10 Total: 30.43 kcal Atomic # 6 Polarization: -3.07 SS G_CDS: 6.42 Total: 3.36 kcal Atomic # 7 Polarization: -112.56 SS G_CDS: -3.58 Total: -116.14 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -1.70 Total: -32.48 kcal Atomic # 14 Polarization: 45.88 SS G_CDS: 2.03 Total: 47.91 kcal Total: -70.20 3.27 -66.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036101781.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.651 kcal (2) G-P(sol) polarization free energy of solvation -70.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds