Wall clock time and date at job start Tue Mar 31 2020 16:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52510 * 2 1 4 4 C 1.53194 * 109.49512 * 120.08343 * 2 1 3 5 5 N 1.46922 * 108.77501 * 174.58439 * 4 2 1 6 6 C 1.34777 * 120.62934 * 126.36670 * 5 4 2 7 7 O 1.21279 * 120.00228 * 354.20287 * 6 5 4 8 8 C 1.50697 * 119.99957 * 174.20203 * 6 5 4 9 9 C 1.52999 * 109.47354 * 307.69439 * 8 6 5 10 10 C 1.53005 * 109.47337 * 67.69367 * 8 6 5 11 11 C 1.53004 * 109.47561 * 187.69343 * 8 6 5 12 12 F 1.39905 * 109.46803 * 60.00127 * 11 8 6 13 13 F 1.39898 * 109.47568 * 179.97438 * 11 8 6 14 14 F 1.39901 * 109.46869 * 300.00626 * 11 8 6 15 15 C 1.46920 * 118.74041 * 306.38653 * 5 4 2 16 16 C 1.53168 * 108.76530 * 53.61164 * 15 5 4 17 17 C 1.53034 * 109.49585 * 239.91505 * 2 1 3 18 18 H 1.09000 * 109.46382 * 58.67844 * 17 2 1 19 19 N 1.46499 * 109.46551 * 298.70546 * 17 2 1 20 20 C 1.36937 * 120.00552 * 154.96780 * 19 17 2 21 21 H 1.08004 * 119.99596 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00331 * 180.28055 * 20 19 17 23 23 N 1.31621 * 119.99825 * 359.72529 * 22 20 19 24 24 Si 1.86797 * 120.00131 * 179.73087 * 22 20 19 25 25 H 1.48508 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47340 * 119.99803 * 24 22 20 27 27 H 1.48495 * 109.46957 * 239.99879 * 24 22 20 28 28 H 1.08998 * 109.47730 * 180.08333 * 1 2 3 29 29 H 1.09001 * 109.46830 * 300.08669 * 1 2 3 30 30 H 1.09002 * 109.46569 * 60.07915 * 1 2 3 31 31 H 1.09002 * 109.58465 * 294.37136 * 4 2 1 32 32 H 1.09002 * 109.59045 * 54.64997 * 4 2 1 33 33 H 1.09005 * 109.46883 * 70.08590 * 9 8 6 34 34 H 1.08999 * 109.47610 * 190.08441 * 9 8 6 35 35 H 1.09001 * 109.46989 * 310.08652 * 9 8 6 36 36 H 1.09009 * 109.46847 * 72.25352 * 10 8 6 37 37 H 1.08998 * 109.47240 * 192.25374 * 10 8 6 38 38 H 1.08993 * 109.46969 * 312.25905 * 10 8 6 39 39 H 1.09003 * 109.58826 * 173.39745 * 15 5 4 40 40 H 1.08999 * 109.59094 * 293.82383 * 15 5 4 41 41 H 1.09003 * 109.47501 * 185.40813 * 16 15 5 42 42 H 1.08999 * 109.50076 * 65.32105 * 16 15 5 43 43 H 0.97001 * 120.00043 * 334.97859 * 19 17 2 44 44 H 0.96998 * 119.99974 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1696 6 6 4.2811 -0.3857 2.1779 7 8 3.7819 0.2002 3.1152 8 6 5.7696 -0.6180 2.1409 9 6 6.0483 -2.1028 1.8993 10 6 6.3866 0.2073 1.0098 11 6 6.3854 -0.1942 3.4759 12 9 5.8213 -0.9488 4.5101 13 9 7.7671 -0.4103 3.4417 14 9 6.1305 1.1636 3.6968 15 6 4.1052 -1.4269 -0.0306 16 6 3.5708 -0.6952 -1.2656 17 6 2.0408 -0.7231 -1.2483 18 1 1.6584 -0.2245 -2.1389 19 7 1.5783 -2.1131 -1.2307 20 6 1.4475 -2.8061 -2.4045 21 1 1.6856 -2.3281 -3.3433 22 6 1.0037 -4.1213 -2.3884 23 7 0.7138 -4.7040 -1.2443 24 14 0.8181 -5.0642 -3.9902 25 1 1.2048 -4.1901 -5.1268 26 1 1.6964 -6.2613 -3.9646 27 1 -0.5951 -5.4905 -4.1527 28 1 -0.3634 -1.0276 0.0015 29 1 -0.3633 0.5152 0.8892 30 1 -0.3632 0.5126 -0.8907 31 1 1.7637 -0.1580 2.1389 32 1 1.6032 -1.7207 1.2994 33 1 5.7707 -2.3631 0.8778 34 1 7.1092 -2.3026 2.0496 35 1 5.4634 -2.7007 2.5983 36 1 6.3816 1.2620 1.2852 37 1 7.4126 -0.1190 0.8399 38 1 5.8050 0.0670 0.0988 39 1 5.1895 -1.3249 0.0139 40 1 3.8374 -2.4820 -0.0867 41 1 3.9336 -1.1900 -2.1665 42 1 3.9160 0.3387 -1.2537 43 1 1.3646 -2.5426 -0.3876 44 1 0.4041 -5.6231 -1.2329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036269311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:46 Heat of formation + Delta-G solvation = -166.501371 kcal Electronic energy + Delta-G solvation = -30139.921210 eV Core-core repulsion = 25678.042746 eV Total energy + Delta-G solvation = -4461.878464 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.12005 -47.62026 -47.50198 -40.67574 -37.94616 -35.91188 -34.14428 -32.70233 -31.50875 -29.30618 -27.77708 -26.74697 -26.20286 -25.23214 -23.62016 -22.27546 -21.76342 -20.04455 -18.68226 -18.33553 -18.17419 -17.42243 -17.23459 -16.46353 -15.51568 -15.35086 -14.85007 -14.66691 -14.49924 -14.27631 -14.23027 -13.96722 -13.77866 -13.71193 -13.67069 -13.60075 -13.37946 -13.32352 -12.66874 -12.65874 -12.47608 -12.37577 -12.15684 -11.65259 -11.61336 -11.47280 -11.29321 -11.12109 -10.95321 -10.86073 -10.56143 -10.35796 -10.21409 -9.91353 -9.65856 -9.61569 -9.00020 -8.36945 -7.04944 -5.85832 -3.14603 2.46480 2.56688 3.03499 3.36504 3.42999 3.45110 3.59551 3.94327 3.96620 4.42608 4.51479 4.56428 4.69604 5.01612 5.16923 5.18285 5.27981 5.31485 5.31814 5.42234 5.44013 5.49539 5.62526 5.70420 5.75656 5.84538 5.89819 5.99684 6.00159 6.16021 6.23032 6.30279 6.43619 6.51355 6.60275 6.67594 6.83384 6.91910 7.49519 7.62937 8.11078 8.32595 9.44551 10.00533 10.35528 11.36530 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.003872 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.520443 B = 7229.663600 C = 7769.892151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.108 4.108 3 H 0.066 0.934 4 C 0.119 3.881 5 N -0.588 5.588 6 C 0.526 3.474 7 O -0.534 6.534 8 C -0.129 4.129 9 C -0.166 4.166 10 C -0.161 4.161 11 C 0.476 3.524 12 F -0.174 7.174 13 F -0.182 7.182 14 F -0.172 7.172 15 C 0.089 3.911 16 C -0.152 4.152 17 C 0.178 3.822 18 H 0.052 0.948 19 N -0.718 5.718 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.010 4.010 23 N -0.932 5.932 24 Si 0.903 3.097 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.079 0.921 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.050 0.950 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.435 9.096 5.001 15.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 H 0.085 0.915 4 C -0.003 4.003 5 N -0.320 5.320 6 C 0.312 3.688 7 O -0.412 6.412 8 C -0.134 4.134 9 C -0.223 4.223 10 C -0.217 4.217 11 C 0.421 3.579 12 F -0.155 7.155 13 F -0.164 7.164 14 F -0.153 7.153 15 C -0.032 4.032 16 C -0.193 4.193 17 C 0.068 3.932 18 H 0.070 0.930 19 N -0.361 5.361 20 C -0.370 4.370 21 H 0.088 0.912 22 C -0.206 4.206 23 N -0.580 5.580 24 Si 0.735 3.265 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 H 0.090 0.910 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.104 0.896 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.097 0.903 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.219 0.781 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.140 9.338 5.348 15.489 hybrid contribution -0.039 -0.762 -0.455 0.889 sum 11.101 8.576 4.892 14.857 Atomic orbital electron populations 1.21666 0.94116 1.03221 1.00521 1.21706 0.96608 0.98879 0.95602 0.91534 1.21722 0.77806 1.01828 0.98919 1.47894 1.07161 1.59260 1.17636 1.19602 0.86931 0.79258 0.83033 1.90758 1.74618 1.41361 1.34427 1.22023 0.95803 1.01619 0.93910 1.22391 1.03871 0.90043 1.06000 1.22218 1.02355 1.00062 0.97107 1.19778 0.75787 0.75474 0.86839 1.93196 1.84801 1.76001 1.61537 1.93154 1.31804 1.94634 1.96782 1.93194 1.93776 1.32852 1.95455 1.22432 0.97523 0.99494 0.83781 1.22568 1.00778 0.98633 0.97345 1.20209 0.90678 0.87419 0.94913 0.93014 1.42484 1.78980 1.07654 1.06968 1.19257 1.37179 0.93952 0.86577 0.91184 1.24700 1.02130 0.97235 0.96581 1.69654 1.51557 1.13142 1.23636 0.86179 0.77351 0.79951 0.83039 1.20631 1.21962 1.21961 0.91012 0.93722 0.92751 0.89621 0.90305 0.87897 0.90255 0.90498 0.90649 0.89877 0.88493 0.89163 0.89211 0.90480 0.93173 0.78101 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 9.05 37.16 0.34 -1.78 16 2 C -0.11 -1.67 2.67 -90.50 -0.24 -1.91 16 3 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 4 C 0.12 1.91 5.43 -3.71 -0.02 1.89 16 5 N -0.59 -8.78 2.96 -172.79 -0.51 -9.29 16 6 C 0.53 8.07 6.22 -10.99 -0.07 8.00 16 7 O -0.53 -9.91 14.29 5.56 0.08 -9.83 16 8 C -0.13 -1.57 0.32 -155.66 -0.05 -1.62 16 9 C -0.17 -1.75 7.71 37.16 0.29 -1.46 16 10 C -0.16 -1.54 7.84 37.16 0.29 -1.25 16 11 C 0.48 6.39 1.96 37.16 0.07 6.47 16 12 F -0.17 -2.63 16.25 2.25 0.04 -2.59 16 13 F -0.18 -2.16 16.34 2.25 0.04 -2.13 16 14 F -0.17 -2.54 15.52 2.25 0.03 -2.50 16 15 C 0.09 1.24 3.72 -3.73 -0.01 1.22 16 16 C -0.15 -2.23 5.62 -26.62 -0.15 -2.38 16 17 C 0.18 3.08 2.53 -67.89 -0.17 2.91 16 18 H 0.05 0.94 8.08 -51.93 -0.42 0.52 16 19 N -0.72 -15.54 3.64 -53.39 -0.19 -15.74 16 20 C -0.24 -5.93 9.93 -15.06 -0.15 -6.08 16 21 H 0.07 1.72 7.83 -52.48 -0.41 1.30 16 22 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 23 N -0.93 -26.18 13.06 55.49 0.72 -25.46 16 24 Si 0.90 21.08 29.55 -169.99 -5.02 16.06 16 25 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 26 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.07 1.29 7.54 -51.93 -0.39 0.89 16 29 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.09 1.40 7.00 -51.93 -0.36 1.04 16 32 H 0.08 1.40 6.65 -51.93 -0.35 1.05 16 33 H 0.10 1.02 4.70 -51.93 -0.24 0.77 16 34 H 0.08 0.69 7.54 -51.93 -0.39 0.30 16 35 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 36 H 0.07 0.74 7.49 -51.92 -0.39 0.35 16 37 H 0.08 0.63 8.07 -51.93 -0.42 0.21 16 38 H 0.10 0.90 4.96 -51.93 -0.26 0.64 16 39 H 0.09 0.99 2.57 -51.93 -0.13 0.86 16 40 H 0.09 1.49 7.72 -51.93 -0.40 1.09 16 41 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.64 7.99 -51.93 -0.42 0.23 16 43 H 0.38 8.97 5.93 -40.82 -0.24 8.72 16 44 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 344.39 15.07 5.19 5.19 Total: -1.00 -29.02 344.39 -5.67 -34.68 By element: Atomic # 1 Polarization: 14.03 SS G_CDS: -6.07 Total: 7.96 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 0.03 Total: 3.64 kcal Atomic # 7 Polarization: -50.50 SS G_CDS: 0.02 Total: -50.48 kcal Atomic # 8 Polarization: -9.91 SS G_CDS: 0.08 Total: -9.83 kcal Atomic # 9 Polarization: -7.33 SS G_CDS: 0.11 Total: -7.22 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.02 -5.67 -34.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036269311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -131.820 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds