Wall clock time and date at job start Tue Mar 31 2020 16:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.52510 * 2 1 4 4 C 1.53194 * 109.49512 * 120.08343 * 2 1 3 5 5 N 1.46922 * 108.77501 * 174.58439 * 4 2 1 6 6 C 1.34777 * 120.62934 * 126.36670 * 5 4 2 7 7 O 1.21279 * 120.00228 * 354.20287 * 6 5 4 8 8 C 1.50697 * 119.99957 * 174.20203 * 6 5 4 9 9 C 1.52999 * 109.47354 * 307.69439 * 8 6 5 10 10 C 1.53005 * 109.47337 * 67.69367 * 8 6 5 11 11 C 1.53004 * 109.47561 * 187.69343 * 8 6 5 12 12 F 1.39905 * 109.46803 * 60.00127 * 11 8 6 13 13 F 1.39898 * 109.47568 * 179.97438 * 11 8 6 14 14 F 1.39901 * 109.46869 * 300.00626 * 11 8 6 15 15 C 1.46920 * 118.74041 * 306.38653 * 5 4 2 16 16 C 1.53168 * 108.76530 * 53.61164 * 15 5 4 17 17 C 1.53034 * 109.49585 * 239.91505 * 2 1 3 18 18 H 1.09000 * 109.46382 * 58.67844 * 17 2 1 19 19 N 1.46499 * 109.46551 * 298.70546 * 17 2 1 20 20 C 1.36937 * 120.00552 * 154.96780 * 19 17 2 21 21 H 1.08004 * 119.99596 * 0.02562 * 20 19 17 22 22 C 1.38811 * 120.00331 * 180.28055 * 20 19 17 23 23 N 1.31621 * 119.99825 * 359.72529 * 22 20 19 24 24 Si 1.86797 * 120.00131 * 179.73087 * 22 20 19 25 25 H 1.48508 * 109.46960 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47340 * 119.99803 * 24 22 20 27 27 H 1.48495 * 109.46957 * 239.99879 * 24 22 20 28 28 H 1.08998 * 109.47730 * 180.08333 * 1 2 3 29 29 H 1.09001 * 109.46830 * 300.08669 * 1 2 3 30 30 H 1.09002 * 109.46569 * 60.07915 * 1 2 3 31 31 H 1.09002 * 109.58465 * 294.37136 * 4 2 1 32 32 H 1.09002 * 109.59045 * 54.64997 * 4 2 1 33 33 H 1.09005 * 109.46883 * 70.08590 * 9 8 6 34 34 H 1.08999 * 109.47610 * 190.08441 * 9 8 6 35 35 H 1.09001 * 109.46989 * 310.08652 * 9 8 6 36 36 H 1.09009 * 109.46847 * 72.25352 * 10 8 6 37 37 H 1.08998 * 109.47240 * 192.25374 * 10 8 6 38 38 H 1.08993 * 109.46969 * 312.25905 * 10 8 6 39 39 H 1.09003 * 109.58826 * 173.39745 * 15 5 4 40 40 H 1.08999 * 109.59094 * 293.82383 * 15 5 4 41 41 H 1.09003 * 109.47501 * 185.40813 * 16 15 5 42 42 H 1.08999 * 109.50076 * 65.32105 * 16 15 5 43 43 H 0.97001 * 120.00043 * 334.97859 * 19 17 2 44 44 H 0.96998 * 119.99974 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7239 1.2496 5 7 3.5045 -0.8293 1.1696 6 6 4.2811 -0.3857 2.1779 7 8 3.7819 0.2002 3.1152 8 6 5.7696 -0.6180 2.1409 9 6 6.0483 -2.1028 1.8993 10 6 6.3866 0.2073 1.0098 11 6 6.3854 -0.1942 3.4759 12 9 5.8213 -0.9488 4.5101 13 9 7.7671 -0.4103 3.4417 14 9 6.1305 1.1636 3.6968 15 6 4.1052 -1.4269 -0.0306 16 6 3.5708 -0.6952 -1.2656 17 6 2.0408 -0.7231 -1.2483 18 1 1.6584 -0.2245 -2.1389 19 7 1.5783 -2.1131 -1.2307 20 6 1.4475 -2.8061 -2.4045 21 1 1.6856 -2.3281 -3.3433 22 6 1.0037 -4.1213 -2.3884 23 7 0.7138 -4.7040 -1.2443 24 14 0.8181 -5.0642 -3.9902 25 1 1.2048 -4.1901 -5.1268 26 1 1.6964 -6.2613 -3.9646 27 1 -0.5951 -5.4905 -4.1527 28 1 -0.3634 -1.0276 0.0015 29 1 -0.3633 0.5152 0.8892 30 1 -0.3632 0.5126 -0.8907 31 1 1.7637 -0.1580 2.1389 32 1 1.6032 -1.7207 1.2994 33 1 5.7707 -2.3631 0.8778 34 1 7.1092 -2.3026 2.0496 35 1 5.4634 -2.7007 2.5983 36 1 6.3816 1.2620 1.2852 37 1 7.4126 -0.1190 0.8399 38 1 5.8050 0.0670 0.0988 39 1 5.1895 -1.3249 0.0139 40 1 3.8374 -2.4820 -0.0867 41 1 3.9336 -1.1900 -2.1665 42 1 3.9160 0.3387 -1.2537 43 1 1.3646 -2.5426 -0.3876 44 1 0.4041 -5.6231 -1.2329 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036269311.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:45 Heat of formation + Delta-G solvation = -183.054299 kcal Electronic energy + Delta-G solvation = -30140.638999 eV Core-core repulsion = 25678.042746 eV Total energy + Delta-G solvation = -4462.596253 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.17783 -48.64919 -48.61445 -41.88052 -39.28749 -37.01721 -35.66989 -34.18495 -32.96425 -30.95000 -28.57609 -27.94719 -27.30548 -26.62468 -25.34568 -23.40730 -23.04697 -21.18923 -19.94672 -19.40972 -19.34684 -19.23201 -18.34203 -17.67347 -16.72120 -16.63428 -16.31221 -15.97125 -15.72469 -15.56714 -15.51736 -15.04387 -14.98032 -14.93088 -14.79919 -14.73183 -14.65371 -14.44320 -14.24277 -13.69128 -13.59318 -13.37482 -13.21471 -12.93810 -12.88480 -12.85577 -12.65432 -12.48729 -12.39422 -12.28810 -12.02883 -11.90396 -11.60780 -11.54576 -11.14240 -10.95180 -10.71709 -9.66808 -8.89033 -7.86141 -5.11773 1.31972 1.46304 1.50872 1.53494 1.60974 1.90110 2.57059 2.62368 2.89130 2.94413 3.41881 3.48636 3.62361 3.73005 3.84338 3.89231 4.00176 4.10098 4.26556 4.37914 4.43904 4.52105 4.53144 4.59835 4.60809 4.67620 4.74287 4.84579 4.92082 5.03315 5.04136 5.10224 5.16107 5.21906 5.31138 5.34568 5.49465 5.61498 5.64915 6.29148 6.36043 6.89645 7.44071 8.20366 8.43429 9.37363 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019734 B = 0.003872 C = 0.003603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.520443 B = 7229.663600 C = 7769.892151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.098 4.098 3 H 0.086 0.914 4 C 0.123 3.877 5 N -0.586 5.586 6 C 0.523 3.477 7 O -0.570 6.570 8 C -0.123 4.123 9 C -0.165 4.165 10 C -0.159 4.159 11 C 0.472 3.528 12 F -0.188 7.188 13 F -0.170 7.170 14 F -0.181 7.181 15 C 0.094 3.906 16 C -0.145 4.145 17 C 0.171 3.829 18 H 0.048 0.952 19 N -0.724 5.724 20 C -0.222 4.222 21 H 0.077 0.923 22 C -0.071 4.071 23 N -0.969 5.969 24 Si 0.959 3.041 25 H -0.266 1.266 26 H -0.299 1.299 27 H -0.304 1.304 28 H 0.040 0.960 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.081 0.919 32 H 0.055 0.945 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.103 0.897 39 H 0.127 0.873 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.373 0.627 44 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.476 10.484 3.776 17.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.117 4.117 3 H 0.105 0.895 4 C 0.000 4.000 5 N -0.316 5.316 6 C 0.310 3.690 7 O -0.450 6.450 8 C -0.128 4.128 9 C -0.222 4.222 10 C -0.216 4.216 11 C 0.418 3.582 12 F -0.170 7.170 13 F -0.152 7.152 14 F -0.163 7.163 15 C -0.027 4.027 16 C -0.186 4.186 17 C 0.062 3.938 18 H 0.066 0.934 19 N -0.365 5.365 20 C -0.354 4.354 21 H 0.095 0.905 22 C -0.263 4.263 23 N -0.621 5.621 24 Si 0.791 3.209 25 H -0.191 1.191 26 H -0.226 1.226 27 H -0.232 1.232 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.099 0.901 32 H 0.073 0.927 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.130 0.870 38 H 0.122 0.878 39 H 0.144 0.856 40 H 0.080 0.920 41 H 0.093 0.907 42 H 0.098 0.902 43 H 0.207 0.793 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 13.214 10.772 4.086 17.531 hybrid contribution -0.665 -1.095 -0.025 1.281 sum 12.549 9.677 4.061 16.359 Atomic orbital electron populations 1.21604 0.94229 1.01480 1.01708 1.21626 0.96481 0.99383 0.94257 0.89546 1.21553 0.78823 1.00473 0.99108 1.47903 1.06634 1.59031 1.18063 1.20158 0.88339 0.78321 0.82179 1.90741 1.75668 1.42991 1.35620 1.22067 0.93300 1.03135 0.94271 1.22436 1.05272 0.88530 1.05934 1.22309 1.03855 0.99613 0.95824 1.19991 0.76336 0.74925 0.86995 1.93170 1.85142 1.76297 1.62355 1.93174 1.30761 1.94509 1.96723 1.93173 1.93916 1.33625 1.95548 1.22467 0.99518 0.97642 0.83042 1.22451 0.98148 1.00516 0.97445 1.20452 0.92624 0.85103 0.95593 0.93364 1.42597 1.79118 1.09227 1.05584 1.19601 1.34258 0.93786 0.87746 0.90531 1.25326 1.03675 0.98530 0.98802 1.69800 1.53970 1.12921 1.25401 0.85266 0.76248 0.78701 0.80701 1.19056 1.22639 1.23197 0.94129 0.91968 0.92142 0.90056 0.92687 0.87137 0.87773 0.92042 0.90720 0.87028 0.87821 0.85597 0.92038 0.90719 0.90189 0.79322 0.94477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.01 9.05 71.98 0.65 -3.35 16 2 C -0.10 -2.90 2.67 -10.72 -0.03 -2.93 16 3 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 4 C 0.12 3.93 5.43 86.36 0.47 4.40 16 5 N -0.59 -16.80 2.96 -818.97 -2.42 -19.23 16 6 C 0.52 15.38 6.22 87.66 0.54 15.92 16 7 O -0.57 -20.94 14.29 -3.03 -0.04 -20.98 16 8 C -0.12 -2.71 0.32 -52.93 -0.02 -2.73 16 9 C -0.17 -3.07 7.71 71.98 0.56 -2.52 16 10 C -0.16 -2.44 7.84 71.98 0.56 -1.88 16 11 C 0.47 11.88 1.96 71.98 0.14 12.02 16 12 F -0.19 -5.57 16.25 44.97 0.73 -4.84 16 13 F -0.17 -3.59 16.34 44.97 0.73 -2.86 16 14 F -0.18 -5.13 15.52 44.97 0.70 -4.44 16 15 C 0.09 2.43 3.72 86.36 0.32 2.75 16 16 C -0.15 -3.85 5.62 30.66 0.17 -3.68 16 17 C 0.17 5.66 2.53 45.02 0.11 5.78 16 18 H 0.05 1.65 8.08 -2.39 -0.02 1.63 16 19 N -0.72 -31.32 3.64 -322.82 -1.18 -32.50 16 20 C -0.22 -10.94 9.93 84.03 0.83 -10.11 16 21 H 0.08 3.63 7.83 -2.91 -0.02 3.61 16 22 C -0.07 -3.78 5.50 84.86 0.47 -3.31 16 23 N -0.97 -55.89 13.06 21.65 0.28 -55.60 16 24 Si 0.96 43.60 29.55 68.60 2.03 45.63 16 25 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 26 H -0.30 -13.74 7.11 99.48 0.71 -13.04 16 27 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 28 H 0.04 1.48 7.54 -2.39 -0.02 1.46 16 29 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 30 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 2.68 7.00 -2.39 -0.02 2.66 16 32 H 0.05 2.03 6.65 -2.39 -0.02 2.01 16 33 H 0.11 1.87 4.70 -2.38 -0.01 1.86 16 34 H 0.10 1.45 7.54 -2.39 -0.02 1.43 16 35 H 0.06 1.35 8.04 -2.39 -0.02 1.34 16 36 H 0.07 1.21 7.49 -2.38 -0.02 1.19 16 37 H 0.11 1.13 8.07 -2.39 -0.02 1.11 16 38 H 0.10 1.45 4.96 -2.39 -0.01 1.44 16 39 H 0.13 2.34 2.57 -2.39 -0.01 2.33 16 40 H 0.06 1.99 7.72 -2.39 -0.02 1.97 16 41 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.08 1.70 7.99 -2.39 -0.02 1.69 16 43 H 0.37 17.89 5.93 -92.71 -0.55 17.34 16 44 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 Total: -1.00 -63.72 344.39 6.11 -57.60 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: 0.49 Total: 26.85 kcal Atomic # 6 Polarization: 5.58 SS G_CDS: 4.79 Total: 10.36 kcal Atomic # 7 Polarization: -104.01 SS G_CDS: -3.31 Total: -107.33 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: -0.04 Total: -20.98 kcal Atomic # 9 Polarization: -14.30 SS G_CDS: 2.16 Total: -12.14 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -63.72 6.11 -57.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036269311.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.451 kcal (2) G-P(sol) polarization free energy of solvation -63.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -183.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds