Wall clock time and date at job start Tue Mar 31 2020 16:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52749 * 2 1 4 4 C 1.53195 * 109.49832 * 239.91804 * 2 1 3 5 5 N 1.46935 * 108.77397 * 185.41436 * 4 2 1 6 6 C 1.34772 * 120.63057 * 233.58700 * 5 4 2 7 7 O 1.21284 * 119.99574 * 354.95212 * 6 5 4 8 8 C 1.50699 * 120.00037 * 174.95228 * 6 5 4 9 9 C 1.53004 * 109.47089 * 301.83068 * 8 6 5 10 10 C 1.52999 * 109.46939 * 61.82947 * 8 6 5 11 11 C 1.53002 * 109.47025 * 181.83100 * 8 6 5 12 12 F 1.39900 * 109.47138 * 60.00113 * 11 8 6 13 13 F 1.39902 * 109.46974 * 179.97438 * 11 8 6 14 14 F 1.39894 * 109.47186 * 300.00104 * 11 8 6 15 15 C 1.46925 * 118.73735 * 53.61055 * 5 4 2 16 16 C 1.53197 * 108.77305 * 306.39028 * 15 5 4 17 17 C 1.53041 * 109.49362 * 120.07995 * 2 1 3 18 18 H 1.09000 * 109.46318 * 301.32079 * 17 2 1 19 19 N 1.46496 * 109.46294 * 61.30107 * 17 2 1 20 20 C 1.36940 * 120.00101 * 204.99776 * 19 17 2 21 21 H 1.08000 * 119.99586 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00013 * 179.97438 * 20 19 17 23 23 N 1.31613 * 120.00113 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00092 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46918 * 270.00030 * 24 22 20 26 26 H 1.48507 * 109.46936 * 29.99590 * 24 22 20 27 27 H 1.48495 * 109.47083 * 149.99816 * 24 22 20 28 28 H 1.08997 * 109.47585 * 299.92025 * 1 2 3 29 29 H 1.09009 * 109.47055 * 59.92493 * 1 2 3 30 30 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.58770 * 305.20141 * 4 2 1 32 32 H 1.08991 * 109.58599 * 65.48871 * 4 2 1 33 33 H 1.09001 * 109.46728 * 49.29147 * 9 8 6 34 34 H 1.08995 * 109.46824 * 169.29068 * 9 8 6 35 35 H 1.09004 * 109.46868 * 289.29477 * 9 8 6 36 36 H 1.09002 * 109.46885 * 69.98094 * 10 8 6 37 37 H 1.09007 * 109.46866 * 189.97823 * 10 8 6 38 38 H 1.08993 * 109.47675 * 309.97854 * 10 8 6 39 39 H 1.09000 * 109.59053 * 66.17597 * 15 5 4 40 40 H 1.08997 * 109.58293 * 186.60772 * 15 5 4 41 41 H 1.08999 * 109.49697 * 294.68294 * 16 15 5 42 42 H 1.09005 * 109.49568 * 174.58958 * 16 15 5 43 43 H 0.97001 * 120.00150 * 24.99302 * 19 17 2 44 44 H 0.96999 * 120.00442 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5047 -0.8292 -1.1695 6 6 4.2812 -0.3864 -2.1782 7 8 3.7727 0.0200 -3.2015 8 6 5.7813 -0.3964 -2.0345 9 6 6.1827 0.4408 -0.8184 10 6 6.2659 -1.8353 -1.8456 11 6 6.4182 0.1952 -3.2936 12 9 5.9750 1.5108 -3.4663 13 9 7.8108 0.1864 -3.1600 14 9 6.0511 -0.5703 -4.4056 15 6 4.1053 -1.4267 0.0308 16 6 3.5707 -0.6950 1.2661 17 6 2.0407 -0.7231 1.2484 18 1 1.6583 -0.2243 2.1390 19 7 1.5783 -2.1131 1.2309 20 6 1.4481 -2.8062 2.4047 21 1 1.6867 -2.3283 3.3433 22 6 1.0095 -4.1231 2.3881 23 7 0.8838 -4.7892 3.5162 24 14 0.5975 -4.9500 0.7645 25 1 -0.8362 -4.7293 0.4464 26 1 1.4385 -4.3705 -0.3136 27 1 0.8626 -6.4073 0.8699 28 1 -0.3634 0.5126 0.8906 29 1 -0.3634 0.5150 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -1.7216 -1.2980 32 1 1.7617 -0.1593 -2.1390 33 1 5.5851 0.1408 0.0424 34 1 7.2388 0.2819 -0.6006 35 1 6.0101 1.4959 -1.0306 36 1 6.1400 -2.3864 -2.7776 37 1 7.3196 -1.8300 -1.5661 38 1 5.6837 -2.3145 -1.0586 39 1 3.8375 -2.4819 0.0869 40 1 5.1895 -1.3246 -0.0136 41 1 3.9158 0.3388 1.2541 42 1 3.9333 -1.1897 2.1672 43 1 1.3643 -2.5424 0.3878 44 1 0.5777 -5.7095 3.5047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001036269312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:49 Heat of formation + Delta-G solvation = -160.828837 kcal Electronic energy + Delta-G solvation = -30281.409140 eV Core-core repulsion = 25819.776655 eV Total energy + Delta-G solvation = -4461.632485 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.19241 -47.68543 -47.58399 -40.84843 -38.12681 -36.04355 -34.29595 -32.79326 -31.64410 -29.91139 -27.86562 -26.89702 -26.32688 -25.45374 -23.34849 -22.38650 -21.82635 -20.15984 -18.75555 -18.41742 -18.31155 -17.89869 -17.34604 -16.58407 -15.66398 -15.45523 -15.02073 -14.79064 -14.59250 -14.50449 -14.11608 -14.05575 -13.97502 -13.80174 -13.72539 -13.71240 -13.47347 -13.42126 -12.79749 -12.73043 -12.58069 -12.43678 -12.26667 -11.80044 -11.70683 -11.65057 -11.57096 -11.28476 -11.06706 -10.99400 -10.69793 -10.51107 -10.29515 -9.96341 -9.77401 -9.63561 -9.04253 -8.54251 -7.37418 -5.86560 -3.22489 2.38295 2.42999 2.90394 3.27035 3.30897 3.38310 3.51849 3.84757 3.86624 4.33038 4.48001 4.49022 4.61078 4.89629 5.00126 5.06702 5.11307 5.20028 5.24471 5.27972 5.31959 5.36729 5.48628 5.52064 5.61202 5.68934 5.75161 5.77981 5.82929 5.97131 6.10683 6.15719 6.29028 6.33903 6.42309 6.55249 6.65460 6.74784 7.33445 7.89239 7.97249 8.32354 9.10197 9.82802 10.02144 11.31685 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.004176 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.500027 B = 6704.091324 C = 6985.802808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.112 4.112 3 H 0.073 0.927 4 C 0.118 3.882 5 N -0.592 5.592 6 C 0.527 3.473 7 O -0.532 6.532 8 C -0.129 4.129 9 C -0.166 4.166 10 C -0.167 4.167 11 C 0.476 3.524 12 F -0.173 7.173 13 F -0.181 7.181 14 F -0.172 7.172 15 C 0.085 3.915 16 C -0.153 4.153 17 C 0.185 3.815 18 H 0.062 0.938 19 N -0.743 5.743 20 C -0.243 4.243 21 H 0.091 0.909 22 C 0.009 3.991 23 N -0.932 5.932 24 Si 0.877 3.123 25 H -0.284 1.284 26 H -0.279 1.279 27 H -0.291 1.291 28 H 0.059 0.941 29 H 0.047 0.953 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.089 0.911 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.083 0.917 43 H 0.360 0.640 44 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.217 10.449 -9.547 18.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.132 4.132 3 H 0.091 0.909 4 C -0.003 4.003 5 N -0.324 5.324 6 C 0.313 3.687 7 O -0.409 6.409 8 C -0.134 4.134 9 C -0.223 4.223 10 C -0.224 4.224 11 C 0.422 3.578 12 F -0.155 7.155 13 F -0.163 7.163 14 F -0.154 7.154 15 C -0.036 4.036 16 C -0.194 4.194 17 C 0.075 3.925 18 H 0.080 0.920 19 N -0.387 5.387 20 C -0.373 4.373 21 H 0.109 0.891 22 C -0.187 4.187 23 N -0.579 5.579 24 Si 0.708 3.292 25 H -0.210 1.210 26 H -0.205 1.205 27 H -0.217 1.217 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.107 0.893 33 H 0.120 0.880 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.094 0.906 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.104 0.896 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.101 0.899 43 H 0.194 0.806 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.925 10.584 -9.865 18.130 hybrid contribution -0.167 -0.751 -1.252 1.469 sum 10.759 9.834 -11.117 18.332 Atomic orbital electron populations 1.21674 0.94013 1.02856 1.01071 1.21771 0.96684 0.99321 0.95413 0.90906 1.21709 0.78041 1.01388 0.99206 1.47931 1.07091 1.59438 1.17930 1.19625 0.87181 0.78167 0.83741 1.90766 1.74701 1.47494 1.27925 1.22019 0.95410 1.00964 0.94985 1.22361 1.04012 1.00033 0.95883 1.22370 1.03546 0.91152 1.05357 1.19761 0.76020 0.76644 0.85423 1.93188 1.89119 1.37201 1.95962 1.93163 1.30720 1.96407 1.95995 1.93194 1.91288 1.75258 1.55619 1.22450 0.98080 0.99113 0.83977 1.22575 1.00328 0.98987 0.97466 1.20178 0.90809 0.86249 0.95300 0.91989 1.42845 1.80661 1.09326 1.05867 1.19042 1.37800 0.94190 0.86254 0.89126 1.24631 1.01416 0.96719 0.95961 1.69681 1.52877 1.10908 1.24443 0.86686 0.78562 0.79345 0.84608 1.21018 1.20545 1.21729 0.92184 0.93441 0.91666 0.91218 0.89293 0.87960 0.89866 0.90647 0.90592 0.89759 0.88147 0.89632 0.88639 0.92644 0.89874 0.80593 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.05 37.16 0.34 -1.60 16 2 C -0.11 -1.59 2.67 -90.50 -0.24 -1.83 16 3 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 4 C 0.12 1.76 5.40 -3.70 -0.02 1.74 16 5 N -0.59 -8.33 2.97 -172.77 -0.51 -8.84 16 6 C 0.53 7.67 6.25 -10.99 -0.07 7.60 16 7 O -0.53 -9.45 14.27 5.55 0.08 -9.37 16 8 C -0.13 -1.48 0.32 -155.66 -0.05 -1.53 16 9 C -0.17 -1.51 7.83 37.16 0.29 -1.22 16 10 C -0.17 -1.62 7.84 37.16 0.29 -1.33 16 11 C 0.48 6.10 1.95 37.16 0.07 6.17 16 12 F -0.17 -2.45 15.75 2.25 0.04 -2.42 16 13 F -0.18 -2.06 16.66 2.25 0.04 -2.02 16 14 F -0.17 -2.50 15.68 2.25 0.04 -2.46 16 15 C 0.09 1.11 3.68 -3.71 -0.01 1.10 16 16 C -0.15 -2.10 5.44 -26.61 -0.14 -2.25 16 17 C 0.18 3.01 2.53 -67.89 -0.17 2.84 16 18 H 0.06 1.07 8.08 -51.93 -0.42 0.65 16 19 N -0.74 -15.16 3.44 -53.38 -0.18 -15.35 16 20 C -0.24 -6.14 10.41 -15.06 -0.16 -6.30 16 21 H 0.09 2.48 8.06 -52.49 -0.42 2.05 16 22 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 23 N -0.93 -27.67 13.97 55.49 0.78 -26.90 16 24 Si 0.88 20.86 27.74 -169.99 -4.71 16.14 16 25 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.28 -6.21 6.52 56.52 0.37 -5.84 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.06 1.04 7.53 -51.93 -0.39 0.65 16 31 H 0.07 1.13 6.64 -51.93 -0.34 0.78 16 32 H 0.09 1.34 7.04 -51.93 -0.37 0.98 16 33 H 0.10 0.91 3.88 -51.93 -0.20 0.70 16 34 H 0.08 0.59 7.96 -51.93 -0.41 0.18 16 35 H 0.07 0.70 7.52 -51.93 -0.39 0.31 16 36 H 0.08 0.78 7.54 -51.93 -0.39 0.38 16 37 H 0.08 0.63 7.95 -51.92 -0.41 0.22 16 38 H 0.10 0.96 4.74 -51.93 -0.25 0.72 16 39 H 0.09 1.32 7.73 -51.93 -0.40 0.91 16 40 H 0.10 0.98 2.83 -51.93 -0.15 0.83 16 41 H 0.05 0.65 7.43 -51.93 -0.39 0.26 16 42 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 43 H 0.36 7.45 3.79 -40.82 -0.15 7.29 16 44 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 LS Contribution 339.69 15.07 5.12 5.12 Total: -1.00 -30.32 339.69 -5.25 -35.57 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: -5.95 Total: 6.98 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 0.03 Total: 3.54 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.08 Total: -51.09 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.08 Total: -9.37 kcal Atomic # 9 Polarization: -7.01 SS G_CDS: 0.11 Total: -6.90 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -4.71 Total: 16.14 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -30.32 -5.25 -35.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036269312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.258 kcal (2) G-P(sol) polarization free energy of solvation -30.323 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds