Wall clock time and date at job start Tue Mar 31 2020 16:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.52749 * 2 1 4 4 C 1.53195 * 109.49832 * 239.91804 * 2 1 3 5 5 N 1.46935 * 108.77397 * 185.41436 * 4 2 1 6 6 C 1.34772 * 120.63057 * 233.58700 * 5 4 2 7 7 O 1.21284 * 119.99574 * 354.95212 * 6 5 4 8 8 C 1.50699 * 120.00037 * 174.95228 * 6 5 4 9 9 C 1.53004 * 109.47089 * 301.83068 * 8 6 5 10 10 C 1.52999 * 109.46939 * 61.82947 * 8 6 5 11 11 C 1.53002 * 109.47025 * 181.83100 * 8 6 5 12 12 F 1.39900 * 109.47138 * 60.00113 * 11 8 6 13 13 F 1.39902 * 109.46974 * 179.97438 * 11 8 6 14 14 F 1.39894 * 109.47186 * 300.00104 * 11 8 6 15 15 C 1.46925 * 118.73735 * 53.61055 * 5 4 2 16 16 C 1.53197 * 108.77305 * 306.39028 * 15 5 4 17 17 C 1.53041 * 109.49362 * 120.07995 * 2 1 3 18 18 H 1.09000 * 109.46318 * 301.32079 * 17 2 1 19 19 N 1.46496 * 109.46294 * 61.30107 * 17 2 1 20 20 C 1.36940 * 120.00101 * 204.99776 * 19 17 2 21 21 H 1.08000 * 119.99586 * 359.97438 * 20 19 17 22 22 C 1.38813 * 120.00013 * 179.97438 * 20 19 17 23 23 N 1.31613 * 120.00113 * 180.02562 * 22 20 19 24 24 Si 1.86802 * 120.00092 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.46918 * 270.00030 * 24 22 20 26 26 H 1.48507 * 109.46936 * 29.99590 * 24 22 20 27 27 H 1.48495 * 109.47083 * 149.99816 * 24 22 20 28 28 H 1.08997 * 109.47585 * 299.92025 * 1 2 3 29 29 H 1.09009 * 109.47055 * 59.92493 * 1 2 3 30 30 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 31 31 H 1.08994 * 109.58770 * 305.20141 * 4 2 1 32 32 H 1.08991 * 109.58599 * 65.48871 * 4 2 1 33 33 H 1.09001 * 109.46728 * 49.29147 * 9 8 6 34 34 H 1.08995 * 109.46824 * 169.29068 * 9 8 6 35 35 H 1.09004 * 109.46868 * 289.29477 * 9 8 6 36 36 H 1.09002 * 109.46885 * 69.98094 * 10 8 6 37 37 H 1.09007 * 109.46866 * 189.97823 * 10 8 6 38 38 H 1.08993 * 109.47675 * 309.97854 * 10 8 6 39 39 H 1.09000 * 109.59053 * 66.17597 * 15 5 4 40 40 H 1.08997 * 109.58293 * 186.60772 * 15 5 4 41 41 H 1.08999 * 109.49697 * 294.68294 * 16 15 5 42 42 H 1.09005 * 109.49568 * 174.58958 * 16 15 5 43 43 H 0.97001 * 120.00150 * 24.99302 * 19 17 2 44 44 H 0.96999 * 120.00442 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5047 -0.8292 -1.1695 6 6 4.2812 -0.3864 -2.1782 7 8 3.7727 0.0200 -3.2015 8 6 5.7813 -0.3964 -2.0345 9 6 6.1827 0.4408 -0.8184 10 6 6.2659 -1.8353 -1.8456 11 6 6.4182 0.1952 -3.2936 12 9 5.9750 1.5108 -3.4663 13 9 7.8108 0.1864 -3.1600 14 9 6.0511 -0.5703 -4.4056 15 6 4.1053 -1.4267 0.0308 16 6 3.5707 -0.6950 1.2661 17 6 2.0407 -0.7231 1.2484 18 1 1.6583 -0.2243 2.1390 19 7 1.5783 -2.1131 1.2309 20 6 1.4481 -2.8062 2.4047 21 1 1.6867 -2.3283 3.3433 22 6 1.0095 -4.1231 2.3881 23 7 0.8838 -4.7892 3.5162 24 14 0.5975 -4.9500 0.7645 25 1 -0.8362 -4.7293 0.4464 26 1 1.4385 -4.3705 -0.3136 27 1 0.8626 -6.4073 0.8699 28 1 -0.3634 0.5126 0.8906 29 1 -0.3634 0.5150 -0.8894 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6053 -1.7216 -1.2980 32 1 1.7617 -0.1593 -2.1390 33 1 5.5851 0.1408 0.0424 34 1 7.2388 0.2819 -0.6006 35 1 6.0101 1.4959 -1.0306 36 1 6.1400 -2.3864 -2.7776 37 1 7.3196 -1.8300 -1.5661 38 1 5.6837 -2.3145 -1.0586 39 1 3.8375 -2.4819 0.0869 40 1 5.1895 -1.3246 -0.0136 41 1 3.9158 0.3388 1.2541 42 1 3.9333 -1.1897 2.1672 43 1 1.3643 -2.5424 0.3878 44 1 0.5777 -5.7095 3.5047 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001036269312.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:48 Heat of formation + Delta-G solvation = -179.102870 kcal Electronic energy + Delta-G solvation = -30282.201561 eV Core-core repulsion = 25819.776655 eV Total energy + Delta-G solvation = -4462.424906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.18477 -48.64772 -48.63191 -41.96810 -39.39788 -37.07480 -35.76694 -34.24740 -33.12547 -31.51670 -28.59070 -28.01349 -27.34028 -26.72378 -25.05731 -23.44219 -23.06179 -21.23166 -20.06253 -19.73622 -19.42208 -19.35066 -18.37485 -17.70492 -16.76125 -16.69523 -16.47768 -15.99712 -15.74773 -15.66100 -15.40866 -15.23268 -15.03303 -14.93300 -14.81872 -14.74572 -14.64869 -14.51015 -14.38009 -13.74174 -13.68945 -13.42318 -13.31963 -13.13923 -12.97891 -12.88130 -12.65511 -12.48942 -12.46928 -12.34500 -12.01575 -11.92561 -11.72025 -11.62256 -11.20792 -11.00930 -10.76696 -9.75583 -9.22183 -7.96488 -5.26953 1.30127 1.36742 1.39184 1.41784 1.45919 1.85860 2.50290 2.56200 2.85440 2.93598 3.36217 3.40170 3.61487 3.62363 3.72637 3.78003 3.93860 3.97827 4.18594 4.29008 4.40373 4.47056 4.49670 4.54948 4.60845 4.63030 4.70718 4.78198 4.88584 4.98663 5.01948 5.05507 5.12660 5.17015 5.25536 5.31254 5.43056 5.57449 5.87067 6.21364 6.28100 6.84970 7.14745 7.91826 8.09190 9.25361 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019326 B = 0.004176 C = 0.004007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.500027 B = 6704.091324 C = 6985.802808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.100 4.100 3 H 0.094 0.906 4 C 0.119 3.881 5 N -0.590 5.590 6 C 0.524 3.476 7 O -0.568 6.568 8 C -0.124 4.124 9 C -0.165 4.165 10 C -0.168 4.168 11 C 0.472 3.528 12 F -0.184 7.184 13 F -0.171 7.171 14 F -0.186 7.186 15 C 0.088 3.912 16 C -0.146 4.146 17 C 0.175 3.825 18 H 0.053 0.947 19 N -0.742 5.742 20 C -0.209 4.209 21 H 0.065 0.935 22 C -0.057 4.057 23 N -0.984 5.984 24 Si 0.936 3.064 25 H -0.286 1.286 26 H -0.256 1.256 27 H -0.302 1.302 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.041 0.959 31 H 0.055 0.945 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.110 0.890 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.064 0.936 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.072 0.928 43 H 0.361 0.639 44 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.911 11.817 -10.488 20.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.120 4.120 3 H 0.112 0.888 4 C -0.004 4.004 5 N -0.321 5.321 6 C 0.312 3.688 7 O -0.447 6.447 8 C -0.129 4.129 9 C -0.221 4.221 10 C -0.225 4.225 11 C 0.418 3.582 12 F -0.165 7.165 13 F -0.152 7.152 14 F -0.167 7.167 15 C -0.033 4.033 16 C -0.186 4.186 17 C 0.067 3.933 18 H 0.071 0.929 19 N -0.386 5.386 20 C -0.340 4.340 21 H 0.083 0.917 22 C -0.248 4.248 23 N -0.635 5.635 24 Si 0.765 3.235 25 H -0.213 1.213 26 H -0.181 1.181 27 H -0.229 1.229 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.128 0.872 35 H 0.092 0.908 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.120 0.880 39 H 0.082 0.918 40 H 0.147 0.853 41 H 0.105 0.895 42 H 0.091 0.909 43 H 0.195 0.805 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.647 12.007 -10.833 20.530 hybrid contribution -0.668 -1.042 -0.954 1.563 sum 11.979 10.965 -11.787 20.067 Atomic orbital electron populations 1.21659 0.93941 1.01682 1.02204 1.21682 0.96708 0.99861 0.93754 0.88815 1.21634 0.78787 1.00580 0.99381 1.47949 1.06749 1.59212 1.18165 1.20144 0.88518 0.77175 0.82986 1.90751 1.75702 1.49031 1.29247 1.22072 0.92911 1.02544 0.95337 1.22437 1.05788 0.99465 0.94448 1.22443 1.05308 0.89623 1.05084 1.19988 0.76561 0.76162 0.85520 1.93167 1.89321 1.37959 1.96041 1.93181 1.29801 1.96325 1.95909 1.93168 1.91494 1.75555 1.56523 1.22510 1.00030 0.97585 0.83153 1.22451 0.97807 1.00947 0.97389 1.20441 0.92703 0.83959 0.96165 0.92906 1.42821 1.80818 1.10781 1.04207 1.19003 1.34323 0.93767 0.86926 0.91742 1.25245 1.03127 0.97806 0.98667 1.69842 1.55842 1.11072 1.26772 0.85710 0.78364 0.77660 0.81732 1.21289 1.18108 1.22921 0.91974 0.91456 0.93934 0.92709 0.89420 0.87521 0.87181 0.90764 0.91385 0.86926 0.87997 0.91811 0.85279 0.89524 0.90892 0.80484 0.93698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.61 9.05 71.98 0.65 -2.96 16 2 C -0.10 -2.62 2.67 -10.72 -0.03 -2.65 16 3 H 0.09 2.13 8.14 -2.39 -0.02 2.12 16 4 C 0.12 3.32 5.40 86.36 0.47 3.78 16 5 N -0.59 -15.21 2.97 -818.90 -2.43 -17.64 16 6 C 0.52 14.12 6.25 87.66 0.55 14.67 16 7 O -0.57 -19.46 14.27 -3.04 -0.04 -19.50 16 8 C -0.12 -2.49 0.32 -52.93 -0.02 -2.50 16 9 C -0.16 -2.31 7.83 71.98 0.56 -1.75 16 10 C -0.17 -2.69 7.84 71.98 0.56 -2.13 16 11 C 0.47 11.07 1.95 71.98 0.14 11.21 16 12 F -0.18 -4.88 15.75 44.97 0.71 -4.17 16 13 F -0.17 -3.38 16.66 44.97 0.75 -2.63 16 14 F -0.19 -5.16 15.68 44.97 0.70 -4.46 16 15 C 0.09 2.06 3.68 86.36 0.32 2.38 16 16 C -0.15 -3.62 5.44 30.67 0.17 -3.45 16 17 C 0.18 5.42 2.53 45.02 0.11 5.53 16 18 H 0.05 1.75 8.08 -2.39 -0.02 1.73 16 19 N -0.74 -29.64 3.44 -322.81 -1.11 -30.76 16 20 C -0.21 -10.61 10.41 84.03 0.87 -9.74 16 21 H 0.06 3.59 8.06 -2.91 -0.02 3.57 16 22 C -0.06 -3.14 5.50 84.86 0.47 -2.68 16 23 N -0.98 -60.05 13.97 21.65 0.30 -59.75 16 24 Si 0.94 43.49 27.74 68.60 1.90 45.39 16 25 H -0.29 -13.30 7.11 99.48 0.71 -12.59 16 26 H -0.26 -10.73 6.52 99.48 0.65 -10.08 16 27 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 28 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 30 H 0.04 1.31 7.53 -2.39 -0.02 1.29 16 31 H 0.05 1.70 6.64 -2.39 -0.02 1.68 16 32 H 0.09 2.51 7.04 -2.39 -0.02 2.49 16 33 H 0.11 1.40 3.88 -2.39 -0.01 1.39 16 34 H 0.11 1.00 7.96 -2.39 -0.02 0.98 16 35 H 0.07 1.11 7.52 -2.39 -0.02 1.09 16 36 H 0.07 1.23 7.54 -2.39 -0.02 1.21 16 37 H 0.11 1.19 7.95 -2.38 -0.02 1.17 16 38 H 0.10 1.61 4.74 -2.39 -0.01 1.60 16 39 H 0.06 1.82 7.73 -2.39 -0.02 1.81 16 40 H 0.13 2.16 2.83 -2.39 -0.01 2.15 16 41 H 0.09 1.66 7.43 -2.39 -0.02 1.65 16 42 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 43 H 0.36 14.50 3.79 -92.71 -0.35 14.15 16 44 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -67.14 339.69 6.25 -60.89 By element: Atomic # 1 Polarization: 22.26 SS G_CDS: 0.63 Total: 22.90 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 4.83 Total: 9.71 kcal Atomic # 7 Polarization: -104.90 SS G_CDS: -3.24 Total: -108.14 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.04 Total: -19.50 kcal Atomic # 9 Polarization: -13.41 SS G_CDS: 2.16 Total: -11.25 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.90 Total: 45.39 kcal Total: -67.14 6.25 -60.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001036269312.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.211 kcal (2) G-P(sol) polarization free energy of solvation -67.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds