Wall clock time and date at job start Tue Mar 31 2020 16:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 114.00030 * 2 1 4 4 C 1.50701 * 109.46999 * 179.97438 * 3 2 1 5 5 C 1.35125 * 125.61314 * 90.00155 * 4 3 2 6 6 C 1.40366 * 107.11427 * 179.97438 * 5 4 3 7 7 C 1.36547 * 106.70831 * 359.97438 * 6 5 4 8 8 C 1.46652 * 125.98857 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00370 * 352.37583 * 8 7 6 10 10 N 1.34777 * 119.99808 * 172.37957 * 8 7 6 11 11 C 1.46927 * 120.63335 * 352.38056 * 10 8 7 12 12 C 1.53197 * 108.77672 * 233.88851 * 11 10 8 13 13 C 1.53042 * 109.31040 * 305.36176 * 12 11 10 14 14 H 1.09001 * 109.45905 * 301.34953 * 13 12 11 15 15 N 1.46501 * 109.46014 * 181.38793 * 13 12 11 16 16 C 1.36929 * 119.99886 * 84.93050 * 15 13 12 17 17 H 1.07998 * 120.00334 * 0.02562 * 16 15 13 18 18 C 1.38818 * 119.99868 * 179.97438 * 16 15 13 19 19 N 1.31622 * 120.00042 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00070 * 179.97438 * 18 16 15 21 21 H 1.48502 * 109.47391 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.47202 * 120.00085 * 20 18 16 23 23 H 1.48500 * 109.47412 * 240.00182 * 20 18 16 24 24 C 1.53044 * 109.53704 * 61.36699 * 13 12 11 25 25 C 1.46931 * 120.63188 * 172.66508 * 10 8 7 26 26 H 1.09001 * 109.58117 * 6.32442 * 25 10 8 27 27 C 1.52999 * 109.58478 * 245.90338 * 25 10 8 28 28 O 1.33927 * 125.61526 * 270.24063 * 4 3 2 29 29 H 1.09003 * 109.46696 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47260 * 299.99906 * 1 2 3 31 31 H 1.08998 * 109.46530 * 60.00319 * 1 2 3 32 32 H 1.08997 * 109.47260 * 59.99275 * 3 2 1 33 33 H 1.09002 * 109.46739 * 299.99842 * 3 2 1 34 34 H 1.07998 * 126.44852 * 359.97438 * 5 4 3 35 35 H 1.08000 * 126.64832 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.58559 * 353.67137 * 11 10 8 37 37 H 1.08994 * 109.58926 * 114.09445 * 11 10 8 38 38 H 1.08999 * 109.49658 * 185.40933 * 12 11 10 39 39 H 1.09000 * 109.52148 * 65.33030 * 12 11 10 40 40 H 0.97004 * 119.99732 * 264.93532 * 15 13 12 41 41 H 0.96993 * 120.00204 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.49385 * 178.68215 * 24 13 12 43 43 H 1.08994 * 109.52642 * 58.60126 * 24 13 12 44 44 H 1.09002 * 109.47218 * 59.99427 * 27 25 10 45 45 H 1.09003 * 109.47092 * 179.97438 * 27 25 10 46 46 H 1.08999 * 109.46897 * 299.99626 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2974 1.1241 -1.0976 6 6 5.6243 1.0197 -0.6516 7 6 5.5812 1.0242 0.7132 8 6 6.7364 0.9331 1.6121 9 8 7.8428 0.7045 1.1599 10 7 6.5726 1.1024 2.9391 11 6 5.2807 1.5418 3.4839 12 6 5.5090 2.7802 4.3563 13 6 6.5641 2.4635 5.4186 14 1 6.2277 1.6226 6.0251 15 7 6.7609 3.6353 6.2756 16 6 5.9340 3.8471 7.3463 17 1 5.1370 3.1502 7.5592 18 6 6.1209 4.9571 8.1586 19 7 7.0926 5.8063 7.8994 20 14 4.9924 5.2465 9.6188 21 1 3.9878 4.1554 9.6920 22 1 5.7946 5.2647 10.8684 23 1 4.2981 6.5492 9.4573 24 6 7.8856 2.1033 4.7360 25 6 7.6843 0.8572 3.8680 26 1 8.5942 0.6543 3.3032 27 6 7.3527 -0.3411 4.7597 28 8 4.2892 1.1205 1.0897 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.9662 1.1499 -2.1252 35 1 6.5080 0.9493 -1.2684 36 1 4.6048 1.7907 2.6658 37 1 4.8485 0.7440 4.0878 38 1 4.5746 3.0594 4.8433 39 1 5.8555 3.6053 3.7339 40 1 7.4770 4.2611 6.0845 41 1 7.2229 6.5821 8.4668 42 1 8.6429 1.9006 5.4934 43 1 8.2106 2.9341 4.1099 44 1 7.1974 -1.2237 4.1392 45 1 8.1787 -0.5216 5.4476 46 1 6.4459 -0.1317 5.3271 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044670485.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:40 Heat of formation + Delta-G solvation = -62.169840 kcal Electronic energy + Delta-G solvation = -27847.086267 eV Core-core repulsion = 23931.588698 eV Total energy + Delta-G solvation = -3915.497569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 5.75 seconds Orbital eigenvalues (eV) -43.87975 -41.29764 -39.04527 -38.79815 -36.33062 -34.46724 -33.87355 -33.48383 -32.12398 -31.07841 -28.73496 -28.31436 -26.63189 -25.95400 -24.55790 -24.05657 -22.78799 -22.48222 -21.56310 -20.13921 -19.16370 -18.57865 -18.03926 -17.67717 -17.09586 -16.96723 -16.74301 -16.60582 -16.03041 -15.67253 -15.38571 -15.31708 -15.02524 -14.80768 -14.58680 -14.32377 -14.16189 -13.98428 -13.85305 -13.54379 -13.16092 -12.97455 -12.92184 -12.87189 -12.64850 -12.49299 -12.35949 -12.11638 -12.11218 -11.96941 -11.71617 -11.38521 -11.14562 -11.09566 -10.87190 -10.72853 -9.97079 -9.60053 -9.01282 -7.92824 -5.21815 -0.14024 1.15308 1.40230 1.48675 1.49057 1.58979 1.88653 2.03426 2.57042 2.93890 3.35502 3.40533 3.67946 3.75331 3.84047 3.85490 3.98963 4.04912 4.17773 4.19764 4.29276 4.31443 4.48198 4.50644 4.51287 4.55660 4.59914 4.61727 4.68968 4.78155 4.82598 4.91568 4.94819 4.97526 5.01543 5.04248 5.22443 5.27567 5.33419 5.47419 5.53259 5.57401 5.80233 6.09000 6.21481 6.28729 6.83959 7.34735 8.09564 8.33272 9.31048 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.012339 B = 0.003320 C = 0.002818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2268.754531 B = 8432.319711 C = 9935.277539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.137 3.863 4 C 0.000 4.000 5 C -0.190 4.190 6 C -0.121 4.121 7 C -0.091 4.091 8 C 0.598 3.402 9 O -0.558 6.558 10 N -0.591 5.591 11 C 0.108 3.892 12 C -0.139 4.139 13 C 0.176 3.824 14 H 0.057 0.943 15 N -0.737 5.737 16 C -0.234 4.234 17 H 0.080 0.920 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.971 3.029 21 H -0.263 1.263 22 H -0.296 1.296 23 H -0.296 1.296 24 C -0.124 4.124 25 C 0.145 3.855 26 H 0.095 0.905 27 C -0.154 4.154 28 O -0.158 6.158 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.188 0.812 35 H 0.169 0.831 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.042 0.958 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.079 0.921 43 H 0.049 0.951 44 H 0.062 0.938 45 H 0.083 0.917 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.085 -12.960 -18.926 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.333 6.333 3 C 0.061 3.939 4 C -0.051 4.051 5 C -0.209 4.209 6 C -0.142 4.142 7 C -0.143 4.143 8 C 0.387 3.613 9 O -0.440 6.440 10 N -0.322 5.322 11 C -0.014 4.014 12 C -0.179 4.179 13 C 0.068 3.932 14 H 0.075 0.925 15 N -0.376 5.376 16 C -0.365 4.365 17 H 0.098 0.902 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.187 1.187 22 H -0.224 1.224 23 H -0.224 1.224 24 C -0.162 4.162 25 C 0.042 3.958 26 H 0.113 0.887 27 C -0.212 4.212 28 O -0.055 6.055 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.135 0.865 34 H 0.206 0.794 35 H 0.187 0.813 36 H 0.123 0.877 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.061 0.939 40 H 0.201 0.799 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.068 0.932 44 H 0.081 0.919 45 H 0.102 0.898 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -11.644 -13.289 -18.667 25.703 hybrid contribution -0.054 1.157 0.794 1.404 sum -11.698 -12.132 -17.873 24.566 Atomic orbital electron populations 1.22998 0.78210 1.04189 1.01615 1.87932 1.22288 1.27279 1.95815 1.20992 0.82213 0.85960 1.04715 1.23087 0.94282 1.03221 0.84558 1.21951 0.91165 1.06672 1.01068 1.22238 0.99913 0.99670 0.92366 1.21935 0.82202 1.15175 0.94954 1.16923 0.86007 0.76888 0.81490 1.90817 1.24598 1.52405 1.76144 1.48212 1.14014 1.64850 1.05117 1.22173 0.83775 0.96713 0.98767 1.22468 1.01123 0.96652 0.97699 1.20415 0.93134 0.89512 0.90189 0.92497 1.42658 1.37218 1.26818 1.30889 1.19665 1.08492 1.05497 1.02873 0.90237 1.25550 1.00666 0.98041 1.02706 1.69833 1.35110 1.15506 1.41846 0.85108 0.78268 0.77502 0.79112 1.18709 1.22365 1.22351 1.22086 0.98529 0.96995 0.98638 1.21249 0.89601 0.95125 0.89796 0.88680 1.22105 1.03389 0.96203 0.99513 1.84186 1.16171 1.70360 1.34764 0.88592 0.92918 0.91817 0.90173 0.86453 0.79437 0.81317 0.87714 0.89717 0.91299 0.93907 0.79855 0.94187 0.90280 0.93227 0.91853 0.89835 0.91761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.48 16 2 O -0.41 -6.80 10.69 -148.98 -1.59 -8.39 16 3 C 0.14 1.83 6.46 71.24 0.46 2.29 16 4 C 0.00 0.00 6.94 24.97 0.17 0.18 16 5 C -0.19 -3.41 10.77 22.07 0.24 -3.17 16 6 C -0.12 -2.80 10.63 22.39 0.24 -2.56 16 7 C -0.09 -2.51 6.76 24.07 0.16 -2.35 16 8 C 0.60 19.01 7.64 86.44 0.66 19.67 16 9 O -0.56 -20.33 16.30 -4.33 -0.07 -20.40 16 10 N -0.59 -17.72 2.68 -799.71 -2.14 -19.86 16 11 C 0.11 3.04 5.69 86.36 0.49 3.53 16 12 C -0.14 -4.80 5.66 30.67 0.17 -4.63 16 13 C 0.18 6.72 2.52 45.02 0.11 6.84 16 14 H 0.06 2.14 6.43 -2.39 -0.02 2.13 16 15 N -0.74 -36.57 5.12 -322.80 -1.65 -38.22 16 16 C -0.23 -12.61 9.93 84.04 0.83 -11.78 16 17 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 18 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 19 N -0.97 -59.44 13.06 21.65 0.28 -59.16 16 20 Si 0.97 45.50 29.55 68.60 2.03 47.53 16 21 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 22 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 23 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 24 C -0.12 -4.19 5.02 30.67 0.15 -4.04 16 25 C 0.15 4.25 3.22 44.97 0.14 4.40 16 26 H 0.10 2.89 7.00 -2.39 -0.02 2.88 16 27 C -0.15 -3.78 9.03 71.98 0.65 -3.13 16 28 O -0.16 -3.94 7.27 -5.05 -0.04 -3.98 16 29 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.19 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.17 3.51 8.06 -2.91 -0.02 3.48 16 36 H 0.11 2.82 4.26 -17.73 -0.08 2.74 16 37 H 0.08 2.16 7.50 -2.39 -0.02 2.14 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 40 H 0.37 20.14 7.80 -92.71 -0.72 19.42 16 41 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 42 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 44 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 46 H 0.06 1.61 5.72 -2.39 -0.01 1.59 16 Total: -1.00 -70.81 373.30 3.23 -67.58 By element: Atomic # 1 Polarization: 31.91 SS G_CDS: 0.20 Total: 32.12 kcal Atomic # 6 Polarization: -3.43 SS G_CDS: 6.21 Total: 2.78 kcal Atomic # 7 Polarization: -113.73 SS G_CDS: -3.51 Total: -117.24 kcal Atomic # 8 Polarization: -31.07 SS G_CDS: -1.70 Total: -32.77 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -70.81 3.23 -67.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044670485.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.408 kcal (2) G-P(sol) polarization free energy of solvation -70.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.75 seconds