Wall clock time and date at job start Tue Mar 31 2020 16:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42904 * 114.00076 * 2 1 4 4 C 1.50703 * 109.47235 * 180.02562 * 3 2 1 5 5 C 1.35126 * 125.61324 * 90.00173 * 4 3 2 6 6 C 1.40363 * 107.11439 * 180.02562 * 5 4 3 7 7 C 1.36550 * 106.70721 * 359.97438 * 6 5 4 8 8 C 1.46656 * 125.98703 * 179.97438 * 7 6 5 9 9 O 1.21690 * 120.00123 * 7.50751 * 8 7 6 10 10 N 1.34771 * 119.99847 * 187.50556 * 8 7 6 11 11 C 1.46927 * 120.63309 * 6.77639 * 10 8 7 12 12 C 1.53192 * 108.77726 * 233.58825 * 11 10 8 13 13 C 1.53043 * 109.30938 * 305.36272 * 12 11 10 14 14 H 1.08999 * 109.44970 * 301.35098 * 13 12 11 15 15 N 1.46506 * 109.45860 * 181.38451 * 13 12 11 16 16 C 1.36936 * 119.99696 * 84.93240 * 15 13 12 17 17 H 1.08007 * 120.00465 * 359.72466 * 16 15 13 18 18 C 1.38817 * 120.00168 * 179.72650 * 16 15 13 19 19 N 1.31619 * 119.99456 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00112 * 180.02562 * 18 16 15 21 21 H 1.48492 * 109.47515 * 59.99880 * 20 18 16 22 22 H 1.48502 * 109.46940 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.47214 * 299.99543 * 20 18 16 24 24 C 1.53036 * 109.53853 * 61.36921 * 13 12 11 25 25 C 1.46932 * 120.63144 * 186.75570 * 10 8 7 26 26 H 1.08999 * 109.58605 * 246.19926 * 25 10 8 27 27 C 1.52994 * 109.58470 * 6.62612 * 25 10 8 28 28 O 1.33926 * 125.61485 * 270.32894 * 4 3 2 29 29 H 1.09001 * 109.47263 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47071 * 299.99693 * 1 2 3 31 31 H 1.09000 * 109.46961 * 59.99770 * 1 2 3 32 32 H 1.08999 * 109.46924 * 60.00516 * 3 2 1 33 33 H 1.08998 * 109.47186 * 300.00489 * 3 2 1 34 34 H 1.08000 * 126.44625 * 0.03302 * 5 4 3 35 35 H 1.07997 * 126.65189 * 180.02562 * 6 5 4 36 36 H 1.08999 * 109.58730 * 353.37505 * 11 10 8 37 37 H 1.09003 * 109.58809 * 113.65496 * 11 10 8 38 38 H 1.09003 * 109.49515 * 185.41224 * 12 11 10 39 39 H 1.08995 * 109.50045 * 65.31400 * 12 11 10 40 40 H 0.96998 * 120.00411 * 264.66238 * 15 13 12 41 41 H 0.97007 * 119.99671 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.49909 * 58.58336 * 24 13 12 43 43 H 1.09003 * 109.49483 * 178.65025 * 24 13 12 44 44 H 1.09009 * 109.47111 * 173.17724 * 27 25 10 45 45 H 1.09006 * 109.47101 * 293.17338 * 27 25 10 46 46 H 1.09001 * 109.47412 * 53.17452 * 27 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5126 1.1865 -0.0006 5 6 4.2965 1.1246 -1.0995 6 6 5.6236 1.0188 -0.6547 7 6 5.5816 1.0221 0.7101 8 6 6.7375 0.9295 1.6081 9 8 7.8657 0.9772 1.1546 10 7 6.5501 0.7915 2.9356 11 6 5.2029 0.5839 3.4839 12 6 4.9421 1.6386 4.5639 13 6 6.0607 1.5823 5.6068 14 1 6.0989 0.5848 6.0446 15 7 5.7972 2.5673 6.6588 16 6 4.9790 2.2454 7.7087 17 1 4.5245 1.2669 7.7589 18 6 4.7338 3.1767 8.7085 19 7 5.2873 4.3692 8.6470 20 14 3.6183 2.7373 10.1410 21 1 4.1815 1.5711 10.8674 22 1 3.5194 3.8958 11.0647 23 1 2.2666 2.3961 9.6293 24 6 7.4006 1.8972 4.9378 25 6 7.6892 0.8454 3.8620 26 1 7.8252 -0.1291 4.3310 27 6 8.9560 1.2302 3.0953 28 8 4.2900 1.1185 1.0878 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8463 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9645 1.1516 -2.1268 35 1 6.5069 0.9492 -1.2722 36 1 4.4648 0.6855 2.6882 37 1 5.1353 -0.4129 3.9197 38 1 3.9852 1.4373 5.0454 39 1 4.9193 2.6283 4.1079 40 1 6.2053 3.4461 6.6138 41 1 5.1163 5.0199 9.3458 42 1 7.3547 2.8844 4.4782 43 1 8.1934 1.8804 5.6856 44 1 9.7731 1.3880 3.7994 45 1 9.2207 0.4288 2.4054 46 1 8.7770 2.1478 2.5349 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001044670490.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:28 Heat of formation + Delta-G solvation = -45.526730 kcal Electronic energy + Delta-G solvation = -27972.124963 eV Core-core repulsion = 24057.349094 eV Total energy + Delta-G solvation = -3914.775870 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 15.05 seconds Orbital eigenvalues (eV) -43.87300 -41.41167 -38.88314 -38.78328 -36.28093 -34.47328 -33.95935 -33.72952 -32.09246 -31.04025 -28.71634 -28.05352 -26.57520 -26.03250 -24.59727 -24.02666 -22.59257 -22.30376 -21.55369 -20.73262 -19.17192 -18.50077 -17.89354 -17.52802 -17.25346 -16.83164 -16.73813 -16.65090 -16.15772 -15.63234 -15.51724 -15.47383 -14.98740 -14.79148 -14.64794 -14.23025 -14.03720 -14.02440 -13.56835 -13.41129 -13.31598 -13.09404 -12.92929 -12.81578 -12.66378 -12.52912 -12.36801 -12.22650 -12.06890 -11.91454 -11.69095 -11.43818 -11.08152 -10.87300 -10.75004 -10.51319 -9.87656 -9.56931 -9.02046 -7.93230 -5.22421 -0.11790 1.20621 1.39680 1.48154 1.50771 1.56803 1.92640 2.06654 2.56744 2.94233 3.35594 3.39752 3.69227 3.70395 3.85347 3.87142 4.02353 4.04527 4.15834 4.24323 4.27597 4.28986 4.48200 4.50096 4.54747 4.58966 4.59834 4.66590 4.67114 4.79752 4.83887 4.90680 4.95755 4.98824 5.07530 5.14570 5.21925 5.34562 5.38505 5.45152 5.52167 5.63966 5.84337 6.07843 6.25060 6.28145 6.91683 7.34223 8.08770 8.32875 9.30164 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010729 B = 0.003704 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2609.109818 B = 7557.130845 C = 9749.005572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.136 3.864 4 C -0.005 4.005 5 C -0.189 4.189 6 C -0.120 4.120 7 C -0.094 4.094 8 C 0.596 3.404 9 O -0.539 6.539 10 N -0.595 5.595 11 C 0.101 3.899 12 C -0.134 4.134 13 C 0.174 3.826 14 H 0.050 0.950 15 N -0.736 5.736 16 C -0.239 4.239 17 H 0.078 0.922 18 C -0.075 4.075 19 N -0.971 5.971 20 Si 0.971 3.029 21 H -0.277 1.277 22 H -0.298 1.298 23 H -0.277 1.277 24 C -0.123 4.123 25 C 0.150 3.850 26 H 0.091 0.909 27 C -0.128 4.128 28 O -0.160 6.160 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.118 0.882 34 H 0.188 0.812 35 H 0.172 0.828 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.043 0.957 40 H 0.371 0.629 41 H 0.250 0.750 42 H 0.051 0.949 43 H 0.078 0.922 44 H 0.064 0.936 45 H 0.073 0.927 46 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.846 -9.162 -21.935 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.332 6.332 3 C 0.060 3.940 4 C -0.056 4.056 5 C -0.208 4.208 6 C -0.140 4.140 7 C -0.146 4.146 8 C 0.385 3.615 9 O -0.419 6.419 10 N -0.326 5.326 11 C -0.021 4.021 12 C -0.175 4.175 13 C 0.065 3.935 14 H 0.068 0.932 15 N -0.375 5.375 16 C -0.371 4.371 17 H 0.096 0.904 18 C -0.267 4.267 19 N -0.622 5.622 20 Si 0.800 3.200 21 H -0.204 1.204 22 H -0.224 1.224 23 H -0.203 1.203 24 C -0.162 4.162 25 C 0.048 3.952 26 H 0.109 0.891 27 C -0.185 4.185 28 O -0.058 6.058 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.094 0.906 33 H 0.135 0.865 34 H 0.205 0.795 35 H 0.189 0.811 36 H 0.128 0.872 37 H 0.102 0.898 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.202 0.798 41 H 0.059 0.941 42 H 0.070 0.930 43 H 0.097 0.903 44 H 0.083 0.917 45 H 0.092 0.908 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -5.350 -9.406 -21.692 24.241 hybrid contribution -0.585 0.791 1.037 1.429 sum -5.934 -8.615 -20.655 23.153 Atomic orbital electron populations 1.22998 0.78263 1.04223 1.01546 1.87927 1.22243 1.27211 1.95798 1.20974 0.82526 0.85975 1.04488 1.23097 0.94229 1.03456 0.84793 1.21943 0.91324 1.06651 1.00893 1.22220 0.99773 0.99766 0.92285 1.22252 0.82165 1.14876 0.95257 1.16960 0.86288 0.76802 0.81427 1.90885 1.21753 1.52917 1.76388 1.48191 1.09462 1.69789 1.05193 1.22324 0.82618 0.99395 0.97760 1.22399 1.00728 0.97976 0.96365 1.20404 0.92404 0.92896 0.87787 0.93176 1.42619 1.56846 1.14220 1.23856 1.19599 1.19899 0.98248 0.99319 0.90404 1.25543 1.02991 0.96228 1.01959 1.69823 1.49903 1.06385 1.36091 0.85243 0.78992 0.76548 0.79177 1.20358 1.22445 1.20334 1.22156 0.98073 0.98556 0.97411 1.21375 0.85522 0.99360 0.88954 0.89085 1.22069 0.94974 1.02544 0.98955 1.84169 1.16468 1.70624 1.34505 0.88490 0.93138 0.91746 0.90636 0.86463 0.79491 0.81050 0.87200 0.89762 0.91612 0.93851 0.79764 0.94124 0.93038 0.90344 0.91725 0.90838 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.32 10.69 -148.98 -1.59 -8.91 16 3 C 0.14 2.04 6.46 71.24 0.46 2.50 16 4 C 0.00 -0.09 6.94 24.97 0.17 0.08 16 5 C -0.19 -3.46 10.77 22.07 0.24 -3.22 16 6 C -0.12 -2.70 10.63 22.39 0.24 -2.47 16 7 C -0.09 -2.58 6.83 24.07 0.16 -2.41 16 8 C 0.60 18.28 7.44 86.44 0.64 18.93 16 9 O -0.54 -17.89 12.47 -4.32 -0.05 -17.94 16 10 N -0.59 -17.71 2.97 -799.73 -2.38 -20.08 16 11 C 0.10 2.90 6.32 86.36 0.55 3.45 16 12 C -0.13 -4.71 5.66 30.67 0.17 -4.54 16 13 C 0.17 6.75 2.73 45.02 0.12 6.88 16 14 H 0.05 1.94 8.08 -2.39 -0.02 1.92 16 15 N -0.74 -36.90 5.12 -322.79 -1.65 -38.56 16 16 C -0.24 -13.05 9.93 84.03 0.83 -12.22 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 18 C -0.08 -4.27 5.50 84.86 0.47 -3.81 16 19 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 20 Si 0.97 45.65 29.55 68.60 2.03 47.68 16 21 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 22 H -0.30 -14.22 7.11 99.48 0.71 -13.52 16 23 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 24 C -0.12 -4.16 4.84 30.67 0.15 -4.01 16 25 C 0.15 4.36 3.49 44.97 0.16 4.52 16 26 H 0.09 2.39 8.14 -2.39 -0.02 2.37 16 27 C -0.13 -3.60 7.61 71.98 0.55 -3.05 16 28 O -0.16 -4.20 7.15 -5.01 -0.04 -4.23 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.19 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 36 H 0.11 3.09 3.81 -49.63 -0.19 2.90 16 37 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 38 H 0.07 2.43 8.14 -2.39 -0.02 2.42 16 39 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.37 20.26 7.80 -92.71 -0.72 19.53 16 41 H 0.25 14.92 8.31 -92.70 -0.77 14.15 16 42 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 44 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 45 H 0.07 2.12 6.58 -2.38 -0.02 2.10 16 46 H 0.05 1.48 6.91 -2.39 -0.02 1.47 16 Total: -1.00 -69.23 371.64 2.84 -66.38 By element: Atomic # 1 Polarization: 32.61 SS G_CDS: 0.08 Total: 32.70 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: 6.16 Total: 2.14 kcal Atomic # 7 Polarization: -114.06 SS G_CDS: -3.75 Total: -117.81 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -1.68 Total: -31.09 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.23 2.84 -66.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001044670490.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.855 kcal (2) G-P(sol) polarization free energy of solvation -69.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 15.05 seconds