Wall clock time and date at job start Tue Mar 31 2020 15:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00170 * 2 1 4 4 C 1.50702 * 109.46696 * 180.02562 * 3 2 1 5 5 C 1.35134 * 125.61857 * 90.00524 * 4 3 2 6 6 C 1.40366 * 107.11809 * 180.02562 * 5 4 3 7 7 C 1.36547 * 106.70308 * 359.97438 * 6 5 4 8 8 C 1.46664 * 125.98091 * 179.97438 * 7 6 5 9 9 O 1.21691 * 120.00195 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99267 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99397 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.52564 * 34.91687 * 11 10 8 13 13 C 1.53033 * 109.49539 * 155.00009 * 11 10 8 14 14 C 1.53037 * 109.53121 * 58.57908 * 13 11 10 15 15 C 1.53193 * 109.31371 * 61.37045 * 14 13 11 16 16 H 1.08999 * 109.58763 * 65.15604 * 15 14 13 17 17 C 1.53003 * 109.58828 * 185.58229 * 15 14 13 18 18 N 1.46930 * 108.77308 * 305.36517 * 15 14 13 19 19 C 1.36932 * 120.63348 * 233.58390 * 18 15 14 20 20 H 1.08007 * 119.99929 * 29.05565 * 19 18 15 21 21 C 1.38809 * 120.00147 * 209.05441 * 19 18 15 22 22 N 1.31618 * 120.00290 * 15.06515 * 21 19 18 23 23 Si 1.86802 * 120.00128 * 195.06001 * 21 19 18 24 24 H 1.48502 * 109.46833 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47183 * 119.99971 * 23 21 19 26 26 H 1.48500 * 109.47259 * 240.00056 * 23 21 19 27 27 C 1.46929 * 118.73574 * 53.61253 * 18 15 14 28 28 O 1.33929 * 125.61561 * 270.32023 * 4 3 2 29 29 H 1.09005 * 109.46678 * 300.00037 * 1 2 3 30 30 H 1.09001 * 109.47214 * 59.99322 * 1 2 3 31 31 H 1.08996 * 109.47628 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47242 * 60.00328 * 3 2 1 33 33 H 1.08998 * 109.47480 * 299.99829 * 3 2 1 34 34 H 1.07999 * 126.43913 * 0.02562 * 5 4 3 35 35 H 1.07991 * 126.64574 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00567 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46398 * 298.56201 * 13 11 10 38 38 H 1.09006 * 109.46112 * 178.59130 * 13 11 10 39 39 H 1.08999 * 109.49991 * 181.32363 * 14 13 11 40 40 H 1.09006 * 109.49682 * 301.38874 * 14 13 11 41 41 H 1.08998 * 109.46950 * 59.99883 * 17 15 14 42 42 H 1.08994 * 109.46869 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.46601 * 300.00205 * 17 15 14 44 44 H 0.96998 * 120.00359 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.59203 * 66.17310 * 27 18 15 46 46 H 1.09003 * 109.58482 * 186.45870 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2967 1.1243 -1.0995 6 6 5.6237 1.0184 -0.6547 7 6 5.5816 1.0216 0.7102 8 6 6.7375 0.9288 1.6081 9 8 7.8602 0.8382 1.1475 10 7 6.5560 0.9427 2.9436 11 6 7.7107 0.8505 3.8406 12 1 8.5586 1.3731 3.3979 13 6 7.3635 1.4892 5.1873 14 6 6.1524 0.7771 5.7942 15 6 6.4979 -0.6962 6.0326 16 1 7.2813 -0.7704 6.7868 17 6 5.2513 -1.4449 6.5084 18 7 6.9719 -1.2809 4.7708 19 6 6.3977 -2.4187 4.2699 20 1 5.3618 -2.6391 4.4817 21 6 7.1470 -3.2887 3.4899 22 7 8.4595 -3.1917 3.4712 23 14 6.2926 -4.5974 2.4667 24 1 4.8238 -4.4968 2.6609 25 1 6.6169 -4.3940 1.0319 26 1 6.7580 -5.9415 2.8936 27 6 8.0742 -0.6219 4.0569 28 8 4.2900 1.1183 1.0878 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.9646 1.1513 -2.1268 35 1 6.5069 0.9479 -1.2722 36 1 5.6611 1.0145 3.3107 37 1 7.1285 2.5433 5.0395 38 1 8.2143 1.3980 5.8626 39 1 5.8911 1.2475 6.7421 40 1 5.3080 0.8469 5.1084 41 1 4.4727 -1.3736 5.7489 42 1 5.4991 -2.4928 6.6770 43 1 4.8939 -1.0015 7.4378 44 1 8.9831 -3.7999 2.9264 45 1 8.9861 -0.6900 4.6500 46 1 8.2277 -1.1079 3.0934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071671035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:53 Heat of formation + Delta-G solvation = -40.048760 kcal Electronic energy + Delta-G solvation = -28665.614095 eV Core-core repulsion = 24751.075768 eV Total energy + Delta-G solvation = -3914.538327 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 2.31 seconds Orbital eigenvalues (eV) -42.58378 -39.35669 -38.06600 -37.49263 -34.20604 -33.08436 -32.67141 -31.44572 -30.51056 -29.83905 -27.51989 -26.27955 -25.61537 -24.88156 -22.50734 -22.12625 -21.52287 -20.51570 -20.08618 -18.71359 -18.20217 -16.98764 -16.41227 -16.23835 -15.95176 -15.82125 -15.42035 -14.93894 -14.27948 -14.13991 -13.88085 -13.79848 -13.55977 -13.22582 -13.03967 -12.90024 -12.85282 -12.74293 -12.45298 -12.07386 -11.89033 -11.67440 -11.22755 -11.13974 -10.93123 -10.84737 -10.66659 -10.34195 -10.27832 -10.05068 -9.93423 -9.91897 -9.78064 -9.47784 -9.42047 -8.62624 -8.40557 -8.31685 -6.56214 -5.69965 -3.13878 1.17668 2.31478 2.69281 3.43429 3.52506 3.52806 3.53568 3.70458 3.85817 4.55879 4.56272 4.82767 4.89073 5.00858 5.07284 5.09218 5.22164 5.33468 5.38439 5.42730 5.45081 5.53327 5.62717 5.73670 5.86297 5.94697 6.02628 6.12725 6.17007 6.34398 6.37502 6.42709 6.45676 6.52502 6.62812 6.67852 6.78404 6.85095 6.99381 7.07454 7.14668 7.38441 7.72706 7.89366 8.03601 8.53686 8.62786 9.28543 9.92872 10.48190 11.38025 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.004873 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.494231 B = 5744.747516 C = 6281.008741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.382 6.382 3 C 0.143 3.857 4 C -0.003 4.003 5 C -0.191 4.191 6 C -0.137 4.137 7 C -0.045 4.045 8 C 0.598 3.402 9 O -0.524 6.524 10 N -0.685 5.685 11 C 0.116 3.884 12 H 0.079 0.921 13 C -0.118 4.118 14 C -0.132 4.132 15 C 0.166 3.834 16 H 0.025 0.975 17 C -0.136 4.136 18 N -0.583 5.583 19 C -0.248 4.248 20 H 0.068 0.932 21 C 0.006 3.994 22 N -0.900 5.900 23 Si 0.894 3.106 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.291 1.291 27 C 0.160 3.840 28 O -0.153 6.153 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.090 0.910 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.155 0.845 35 H 0.161 0.839 36 H 0.400 0.600 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.053 0.947 40 H 0.055 0.945 41 H 0.052 0.948 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.252 0.748 45 H 0.028 0.972 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.800 12.718 -3.919 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.301 6.301 3 C 0.067 3.933 4 C -0.055 4.055 5 C -0.210 4.210 6 C -0.158 4.158 7 C -0.098 4.098 8 C 0.383 3.617 9 O -0.403 6.403 10 N -0.334 5.334 11 C 0.011 3.989 12 H 0.097 0.903 13 C -0.156 4.156 14 C -0.171 4.171 15 C 0.059 3.941 16 H 0.043 0.957 17 C -0.193 4.193 18 N -0.306 5.306 19 C -0.378 4.378 20 H 0.086 0.914 21 C -0.193 4.193 22 N -0.544 5.544 23 Si 0.724 3.276 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.218 1.218 27 C 0.034 3.966 28 O -0.049 6.049 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.088 0.912 33 H 0.102 0.898 34 H 0.173 0.827 35 H 0.179 0.821 36 H 0.236 0.764 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.063 0.937 45 H 0.046 0.954 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.864 12.365 -3.966 17.589 hybrid contribution -0.959 -0.608 -0.635 1.301 sum -12.823 11.756 -4.601 17.995 Atomic orbital electron populations 1.22799 0.80225 1.03367 1.00102 1.88050 1.20118 1.26534 1.95448 1.20677 0.84355 0.85968 1.02316 1.22115 0.92657 1.06178 0.84566 1.21557 0.92528 1.07435 0.99475 1.21909 0.98437 1.02294 0.93118 1.22468 0.81944 1.10379 0.94959 1.16461 0.85644 0.77637 0.81972 1.90859 1.22039 1.51270 1.76108 1.45793 1.11262 1.71677 1.04717 1.21895 0.87452 1.01272 0.88301 0.90306 1.21690 0.99449 0.98093 0.96386 1.22083 0.97241 0.98445 0.99357 1.20461 0.94348 0.90195 0.89103 0.95703 1.21795 0.97843 1.01004 0.98689 1.44055 1.39740 1.27303 1.19521 1.19123 0.93542 0.97461 1.27638 0.91403 1.25032 0.95042 0.97511 1.01694 1.69982 1.03700 1.39058 1.41674 0.86353 0.79118 0.81594 0.80559 1.20276 1.21584 1.21770 1.21214 0.89178 0.86722 0.99515 1.84013 1.16438 1.69799 1.34617 0.93682 0.93816 0.89142 0.91205 0.89823 0.82744 0.82141 0.76431 0.92956 0.90895 0.92784 0.92680 0.92919 0.92053 0.94438 0.93739 0.95444 0.88345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.77 10.69 -35.23 -0.38 -5.14 16 3 C 0.14 1.48 6.46 36.01 0.23 1.71 16 4 C 0.00 -0.04 6.94 -35.41 -0.25 -0.29 16 5 C -0.19 -2.58 10.77 -39.89 -0.43 -3.01 16 6 C -0.14 -2.20 10.62 -39.39 -0.42 -2.62 16 7 C -0.04 -0.81 7.13 -36.79 -0.26 -1.07 16 8 C 0.60 12.23 7.75 -12.86 -0.10 12.13 16 9 O -0.52 -12.14 16.53 5.20 0.09 -12.05 16 10 N -0.69 -13.10 4.91 -55.00 -0.27 -13.37 16 11 C 0.12 2.26 2.81 -67.81 -0.19 2.07 16 12 H 0.08 1.54 7.58 -51.93 -0.39 1.14 16 13 C -0.12 -1.88 5.59 -26.70 -0.15 -2.03 16 14 C -0.13 -2.15 5.20 -26.61 -0.14 -2.29 16 15 C 0.17 3.31 3.50 -67.59 -0.24 3.08 16 16 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 17 C -0.14 -2.52 7.95 37.16 0.30 -2.22 16 18 N -0.58 -14.13 2.91 -164.77 -0.48 -14.61 16 19 C -0.25 -6.72 8.61 -15.06 -0.13 -6.85 16 20 H 0.07 1.82 6.20 -52.48 -0.33 1.49 16 21 C 0.01 0.17 4.96 -17.43 -0.09 0.08 16 22 N -0.90 -26.86 11.14 55.49 0.62 -26.24 16 23 Si 0.89 22.82 29.58 -169.99 -5.03 17.79 16 24 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 27 C 0.16 3.87 4.89 -3.71 -0.02 3.85 16 28 O -0.15 -2.57 10.40 5.00 0.05 -2.51 16 29 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.15 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.16 2.40 8.06 -52.49 -0.42 1.98 16 36 H 0.40 7.14 6.53 -40.82 -0.27 6.87 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 39 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.05 0.90 6.40 -51.93 -0.33 0.57 16 41 H 0.05 1.00 7.40 -51.93 -0.38 0.61 16 42 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 43 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 45 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 2.81 6.06 -51.93 -0.31 2.50 16 LS Contribution 373.47 15.07 5.63 5.63 Total: -1.00 -33.32 373.47 -7.58 -40.90 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: -7.05 Total: 5.69 kcal Atomic # 6 Polarization: 4.67 SS G_CDS: -0.76 Total: 3.91 kcal Atomic # 7 Polarization: -54.08 SS G_CDS: -0.13 Total: -54.21 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.24 Total: -19.71 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.03 Total: 17.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -33.32 -7.58 -40.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071671035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.855 kcal (2) G-P(sol) polarization free energy of solvation -33.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.31 seconds