Wall clock time and date at job start Tue Mar 31 2020 15:51:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42898 * 114.00170 * 2 1 4 4 C 1.50702 * 109.46696 * 180.02562 * 3 2 1 5 5 C 1.35134 * 125.61857 * 90.00524 * 4 3 2 6 6 C 1.40366 * 107.11809 * 180.02562 * 5 4 3 7 7 C 1.36547 * 106.70308 * 359.97438 * 6 5 4 8 8 C 1.46664 * 125.98091 * 179.97438 * 7 6 5 9 9 O 1.21691 * 120.00195 * 359.97438 * 8 7 6 10 10 N 1.34776 * 119.99267 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99397 * 180.02562 * 10 8 7 12 12 H 1.08995 * 109.52564 * 34.91687 * 11 10 8 13 13 C 1.53033 * 109.49539 * 155.00009 * 11 10 8 14 14 C 1.53037 * 109.53121 * 58.57908 * 13 11 10 15 15 C 1.53193 * 109.31371 * 61.37045 * 14 13 11 16 16 H 1.08999 * 109.58763 * 65.15604 * 15 14 13 17 17 C 1.53003 * 109.58828 * 185.58229 * 15 14 13 18 18 N 1.46930 * 108.77308 * 305.36517 * 15 14 13 19 19 C 1.36932 * 120.63348 * 233.58390 * 18 15 14 20 20 H 1.08007 * 119.99929 * 29.05565 * 19 18 15 21 21 C 1.38809 * 120.00147 * 209.05441 * 19 18 15 22 22 N 1.31618 * 120.00290 * 15.06515 * 21 19 18 23 23 Si 1.86802 * 120.00128 * 195.06001 * 21 19 18 24 24 H 1.48502 * 109.46833 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47183 * 119.99971 * 23 21 19 26 26 H 1.48500 * 109.47259 * 240.00056 * 23 21 19 27 27 C 1.46929 * 118.73574 * 53.61253 * 18 15 14 28 28 O 1.33929 * 125.61561 * 270.32023 * 4 3 2 29 29 H 1.09005 * 109.46678 * 300.00037 * 1 2 3 30 30 H 1.09001 * 109.47214 * 59.99322 * 1 2 3 31 31 H 1.08996 * 109.47628 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47242 * 60.00328 * 3 2 1 33 33 H 1.08998 * 109.47480 * 299.99829 * 3 2 1 34 34 H 1.07999 * 126.43913 * 0.02562 * 5 4 3 35 35 H 1.07991 * 126.64574 * 179.97438 * 6 5 4 36 36 H 0.96996 * 120.00567 * 359.97438 * 10 8 7 37 37 H 1.09003 * 109.46398 * 298.56201 * 13 11 10 38 38 H 1.09006 * 109.46112 * 178.59130 * 13 11 10 39 39 H 1.08999 * 109.49991 * 181.32363 * 14 13 11 40 40 H 1.09006 * 109.49682 * 301.38874 * 14 13 11 41 41 H 1.08998 * 109.46950 * 59.99883 * 17 15 14 42 42 H 1.08994 * 109.46869 * 179.97438 * 17 15 14 43 43 H 1.08997 * 109.46601 * 300.00205 * 17 15 14 44 44 H 0.96998 * 120.00359 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.59203 * 66.17310 * 27 18 15 46 46 H 1.09003 * 109.58482 * 186.45870 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1863 -0.0006 5 6 4.2967 1.1243 -1.0995 6 6 5.6237 1.0184 -0.6547 7 6 5.5816 1.0216 0.7102 8 6 6.7375 0.9288 1.6081 9 8 7.8602 0.8382 1.1475 10 7 6.5560 0.9427 2.9436 11 6 7.7107 0.8505 3.8406 12 1 8.5586 1.3731 3.3979 13 6 7.3635 1.4892 5.1873 14 6 6.1524 0.7771 5.7942 15 6 6.4979 -0.6962 6.0326 16 1 7.2813 -0.7704 6.7868 17 6 5.2513 -1.4449 6.5084 18 7 6.9719 -1.2809 4.7708 19 6 6.3977 -2.4187 4.2699 20 1 5.3618 -2.6391 4.4817 21 6 7.1470 -3.2887 3.4899 22 7 8.4595 -3.1917 3.4712 23 14 6.2926 -4.5974 2.4667 24 1 4.8238 -4.4968 2.6609 25 1 6.6169 -4.3940 1.0319 26 1 6.7580 -5.9415 2.8936 27 6 8.0742 -0.6219 4.0569 28 8 4.2900 1.1183 1.0878 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6887 1.8463 0.8899 33 1 1.6887 1.8464 -0.8900 34 1 3.9646 1.1513 -2.1268 35 1 6.5069 0.9479 -1.2722 36 1 5.6611 1.0145 3.3107 37 1 7.1285 2.5433 5.0395 38 1 8.2143 1.3980 5.8626 39 1 5.8911 1.2475 6.7421 40 1 5.3080 0.8469 5.1084 41 1 4.4727 -1.3736 5.7489 42 1 5.4991 -2.4928 6.6770 43 1 4.8939 -1.0015 7.4378 44 1 8.9831 -3.7999 2.9264 45 1 8.9861 -0.6900 4.6500 46 1 8.2277 -1.1079 3.0934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071671035.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:51:52 Heat of formation + Delta-G solvation = -63.228584 kcal Electronic energy + Delta-G solvation = -28666.619247 eV Core-core repulsion = 24751.075768 eV Total energy + Delta-G solvation = -3915.543480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -43.78310 -40.94893 -39.18152 -38.81603 -35.90886 -34.60091 -34.18946 -32.76128 -31.87410 -31.67562 -28.52420 -27.78601 -26.89326 -26.36046 -24.01805 -23.66753 -22.70092 -22.12122 -21.42518 -20.41043 -19.56394 -18.25450 -17.92164 -17.41311 -17.16369 -16.94818 -16.74560 -16.51550 -15.92645 -15.76867 -15.49601 -15.25487 -14.85623 -14.73690 -14.46351 -14.30472 -14.03915 -14.00032 -13.67368 -13.56318 -13.03498 -12.91242 -12.89197 -12.66234 -12.56619 -12.43780 -12.35510 -12.14393 -12.08704 -11.60334 -11.42184 -11.20645 -11.10851 -11.07648 -10.73764 -10.55392 -10.16094 -9.66270 -8.59045 -7.84142 -5.28571 -0.09821 1.16895 1.35641 1.40569 1.47323 1.51126 2.07782 2.29578 2.47696 2.99130 3.31641 3.58840 3.61977 3.81780 3.87083 4.00422 4.07923 4.16709 4.19877 4.28594 4.46480 4.50770 4.54414 4.59747 4.62135 4.71099 4.74680 4.79007 4.84614 4.89912 4.94114 5.01861 5.04642 5.09609 5.24112 5.30290 5.32166 5.53487 5.56011 5.62545 5.70681 5.72176 5.81344 6.11318 6.42952 6.50913 7.09138 7.17419 7.91704 8.41263 9.20948 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.009886 B = 0.004873 C = 0.004457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2831.494231 B = 5744.747516 C = 6281.008741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.421 6.421 3 C 0.141 3.859 4 C 0.001 3.999 5 C -0.190 4.190 6 C -0.134 4.134 7 C -0.085 4.085 8 C 0.592 3.408 9 O -0.566 6.566 10 N -0.678 5.678 11 C 0.124 3.876 12 H 0.074 0.926 13 C -0.110 4.110 14 C -0.121 4.121 15 C 0.154 3.846 16 H 0.019 0.981 17 C -0.128 4.128 18 N -0.596 5.596 19 C -0.234 4.234 20 H 0.073 0.927 21 C -0.053 4.053 22 N -0.934 5.934 23 Si 0.944 3.056 24 H -0.264 1.264 25 H -0.304 1.304 26 H -0.289 1.289 27 C 0.169 3.831 28 O -0.165 6.165 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.124 0.876 34 H 0.191 0.809 35 H 0.163 0.837 36 H 0.408 0.592 37 H 0.086 0.914 38 H 0.080 0.920 39 H 0.093 0.907 40 H 0.056 0.944 41 H 0.046 0.954 42 H 0.035 0.965 43 H 0.077 0.923 44 H 0.243 0.757 45 H 0.004 0.996 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 14.820 -3.593 22.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.341 6.341 3 C 0.066 3.934 4 C -0.051 4.051 5 C -0.209 4.209 6 C -0.155 4.155 7 C -0.138 4.138 8 C 0.379 3.621 9 O -0.448 6.448 10 N -0.327 5.327 11 C 0.019 3.981 12 H 0.092 0.908 13 C -0.147 4.147 14 C -0.160 4.160 15 C 0.049 3.951 16 H 0.037 0.963 17 C -0.186 4.186 18 N -0.320 5.320 19 C -0.365 4.365 20 H 0.090 0.910 21 C -0.248 4.248 22 N -0.581 5.581 23 Si 0.774 3.226 24 H -0.189 1.189 25 H -0.232 1.232 26 H -0.216 1.216 27 C 0.042 3.958 28 O -0.061 6.061 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.141 0.859 34 H 0.209 0.791 35 H 0.181 0.819 36 H 0.244 0.756 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.112 0.888 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.054 0.946 43 H 0.096 0.904 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -15.393 14.489 -3.596 21.443 hybrid contribution 0.011 -1.231 -0.733 1.432 sum -15.382 13.258 -4.329 20.764 Atomic orbital electron populations 1.23001 0.78052 1.04043 1.01865 1.87976 1.22545 1.27726 1.95839 1.21019 0.81577 0.85801 1.05051 1.23084 0.94419 1.03617 0.83937 1.21952 0.90915 1.06785 1.01225 1.22224 1.00063 1.00617 0.92575 1.22064 0.82213 1.14327 0.95162 1.16826 0.86015 0.76730 0.82517 1.90818 1.23881 1.53208 1.76853 1.45721 1.11422 1.71174 1.04427 1.21669 0.87861 0.97943 0.90665 0.90822 1.21675 0.99764 0.99531 0.93766 1.21973 0.97152 0.95442 1.01411 1.20782 0.94672 0.92801 0.86861 0.96298 1.21723 0.96845 0.99623 1.00395 1.44269 1.39415 1.26869 1.21416 1.19405 0.93583 0.97471 1.26026 0.90990 1.25668 0.95535 0.99888 1.03703 1.70139 1.04878 1.40128 1.43001 0.85532 0.78917 0.79822 0.78334 1.18873 1.23220 1.21612 1.20894 0.88778 0.89527 0.96575 1.83984 1.15924 1.70228 1.35950 0.92507 0.91421 0.89144 0.89622 0.85883 0.79134 0.81902 0.75550 0.89517 0.90158 0.88839 0.92511 0.93475 0.94567 0.90398 0.94766 0.97788 0.93322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 11.01 113.37 1.25 1.58 16 2 O -0.42 -9.33 10.69 -148.98 -1.59 -10.92 16 3 C 0.14 2.42 6.46 71.24 0.46 2.88 16 4 C 0.00 0.04 6.94 24.97 0.17 0.21 16 5 C -0.19 -4.71 10.77 22.07 0.24 -4.47 16 6 C -0.13 -4.28 10.62 22.39 0.24 -4.04 16 7 C -0.09 -3.13 7.13 24.08 0.17 -2.96 16 8 C 0.59 25.07 7.75 86.44 0.67 25.74 16 9 O -0.57 -27.70 16.53 -4.32 -0.07 -27.77 16 10 N -0.68 -26.13 4.91 -446.14 -2.19 -28.32 16 11 C 0.12 4.87 2.81 45.07 0.13 5.00 16 12 H 0.07 2.96 7.58 -2.39 -0.02 2.94 16 13 C -0.11 -3.22 5.59 30.62 0.17 -3.05 16 14 C -0.12 -3.53 5.20 30.67 0.16 -3.37 16 15 C 0.15 5.93 3.50 44.98 0.16 6.09 16 16 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 17 C -0.13 -4.49 7.95 71.98 0.57 -3.92 16 18 N -0.60 -29.30 2.91 -675.21 -1.96 -31.27 16 19 C -0.23 -12.92 8.61 84.03 0.72 -12.19 16 20 H 0.07 3.86 6.20 -2.91 -0.02 3.85 16 21 C -0.05 -3.13 4.96 84.86 0.42 -2.71 16 22 N -0.93 -58.76 11.14 21.65 0.24 -58.52 16 23 Si 0.94 48.39 29.58 68.60 2.03 50.42 16 24 H -0.26 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 26 H -0.29 -14.59 7.11 99.48 0.71 -13.89 16 27 C 0.17 8.53 4.89 86.36 0.42 8.95 16 28 O -0.16 -5.37 10.40 -5.03 -0.05 -5.43 16 29 H 0.06 0.58 8.14 -2.38 -0.02 0.56 16 30 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.12 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.19 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.16 4.96 8.06 -2.92 -0.02 4.94 16 36 H 0.41 14.23 6.53 -92.71 -0.61 13.63 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.08 2.29 8.14 -2.38 -0.02 2.27 16 39 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 40 H 0.06 1.67 6.40 -2.38 -0.02 1.65 16 41 H 0.05 1.68 7.40 -2.39 -0.02 1.66 16 42 H 0.04 1.42 7.66 -2.39 -0.02 1.40 16 43 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 44 H 0.24 15.10 8.31 -92.71 -0.77 14.33 16 45 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 46 H 0.05 2.95 6.06 -2.39 -0.01 2.94 16 Total: -1.00 -77.88 373.47 2.73 -75.14 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.38 Total: 22.91 kcal Atomic # 6 Polarization: 7.80 SS G_CDS: 5.95 Total: 13.75 kcal Atomic # 7 Polarization: -114.20 SS G_CDS: -3.91 Total: -118.11 kcal Atomic # 8 Polarization: -42.40 SS G_CDS: -1.72 Total: -44.11 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.42 kcal Total: -77.88 2.73 -75.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071671035.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.913 kcal (2) G-P(sol) polarization free energy of solvation -77.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds