Wall clock time and date at job start Tue Mar 31 2020 15:52:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42901 * 113.99777 * 2 1 4 4 C 1.50700 * 109.46862 * 179.97438 * 3 2 1 5 5 C 1.35130 * 125.61481 * 89.99988 * 4 3 2 6 6 C 1.40363 * 107.11551 * 179.97438 * 5 4 3 7 7 C 1.36543 * 106.70812 * 0.02562 * 6 5 4 8 8 C 1.46657 * 125.99120 * 180.02562 * 7 6 5 9 9 O 1.21700 * 119.99849 * 359.97438 * 8 7 6 10 10 N 1.34772 * 120.00150 * 179.97438 * 8 7 6 11 11 C 1.46504 * 119.99993 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.49805 * 324.99858 * 11 10 8 13 13 C 1.53040 * 109.49722 * 204.93615 * 11 10 8 14 14 C 1.53043 * 109.53642 * 301.41431 * 13 11 10 15 15 C 1.53194 * 109.30976 * 298.63206 * 14 13 11 16 16 H 1.08998 * 109.59140 * 294.70402 * 15 14 13 17 17 C 1.53002 * 109.58386 * 174.42177 * 15 14 13 18 18 N 1.46923 * 108.77679 * 54.64385 * 15 14 13 19 19 C 1.36936 * 120.63727 * 126.40581 * 18 15 14 20 20 H 1.07999 * 119.99958 * 330.85830 * 19 18 15 21 21 C 1.38817 * 120.00007 * 150.85449 * 19 18 15 22 22 N 1.31624 * 120.00014 * 343.81729 * 21 19 18 23 23 Si 1.86797 * 119.99980 * 163.82035 * 21 19 18 24 24 H 1.48507 * 109.46927 * 94.30804 * 23 21 19 25 25 H 1.48501 * 109.47128 * 214.31185 * 23 21 19 26 26 H 1.48502 * 109.46829 * 334.31196 * 23 21 19 27 27 C 1.47002 * 118.74888 * 306.38683 * 18 15 14 28 28 O 1.33928 * 125.61815 * 269.97305 * 4 3 2 29 29 H 1.08999 * 109.47521 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47696 * 300.00461 * 1 2 3 31 31 H 1.09003 * 109.47254 * 60.00327 * 1 2 3 32 32 H 1.08997 * 109.47517 * 59.99247 * 3 2 1 33 33 H 1.08998 * 109.47094 * 299.99633 * 3 2 1 34 34 H 1.08003 * 126.44570 * 359.97438 * 5 4 3 35 35 H 1.08000 * 126.64782 * 180.02562 * 6 5 4 36 36 H 0.96995 * 120.00501 * 0.02562 * 10 8 7 37 37 H 1.08995 * 109.46267 * 61.43529 * 13 11 10 38 38 H 1.09004 * 109.45903 * 181.39402 * 13 11 10 39 39 H 1.08998 * 109.49833 * 58.58672 * 14 13 11 40 40 H 1.08997 * 109.49560 * 178.69075 * 14 13 11 41 41 H 1.09006 * 109.47135 * 60.00288 * 17 15 14 42 42 H 1.08998 * 109.47525 * 180.02562 * 17 15 14 43 43 H 1.08997 * 109.47486 * 300.00544 * 17 15 14 44 44 H 0.96992 * 119.99997 * 179.97438 * 22 21 19 45 45 H 1.08996 * 109.58195 * 293.82614 * 27 18 15 46 46 H 1.09004 * 109.62756 * 173.38298 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 6 4.2974 1.1241 -1.0976 6 6 5.6242 1.0197 -0.6516 7 6 5.5811 1.0231 0.7131 8 6 6.7362 0.9327 1.6121 9 8 7.8596 0.8443 1.1524 10 7 6.5538 0.9475 2.9473 11 6 7.7079 0.8578 3.8454 12 1 8.4629 0.2075 3.4036 13 6 7.2635 0.2829 5.1923 14 6 6.1791 1.1773 5.7977 15 6 6.7521 2.5781 6.0352 16 1 7.5352 2.5292 6.7917 17 6 5.6385 3.5140 6.5095 18 7 7.3128 3.0798 4.7733 19 6 6.9251 4.2933 4.2710 20 1 5.9362 4.6735 4.4807 21 6 7.8030 5.0348 3.4924 22 7 9.0875 4.7472 3.4934 23 14 7.1617 6.4409 2.4431 24 1 7.2863 7.7159 3.1943 25 1 7.9542 6.5250 1.1901 26 1 5.7345 6.1996 2.1110 27 6 8.2985 2.2548 4.0600 28 8 4.2896 1.1256 1.0897 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.6885 1.8465 0.8899 33 1 1.6886 1.8464 -0.8900 34 1 3.9661 1.1498 -2.1252 35 1 6.5080 0.9502 -1.2685 36 1 5.6585 1.0176 3.3138 37 1 6.8657 -0.7211 5.0452 38 1 8.1176 0.2395 5.8682 39 1 5.3349 1.2410 5.1112 40 1 5.8466 0.7548 6.7459 41 1 5.2153 3.1333 7.4391 42 1 6.0480 4.5101 6.6775 43 1 4.8588 3.5655 5.7496 44 1 9.7009 5.2651 2.9491 45 1 9.2095 2.1791 4.6536 46 1 8.5254 2.7079 3.0949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071671036.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:06 Heat of formation + Delta-G solvation = -63.051332 kcal Electronic energy + Delta-G solvation = -28565.083942 eV Core-core repulsion = 24649.548149 eV Total energy + Delta-G solvation = -3915.535794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 9.79 seconds Orbital eigenvalues (eV) -43.78688 -40.95002 -39.17677 -38.80851 -35.90456 -34.59262 -34.18987 -32.76254 -31.87606 -31.67860 -28.52640 -27.78063 -26.88050 -26.35261 -24.02274 -23.67167 -22.70452 -22.11713 -21.42730 -20.40846 -19.56627 -18.24493 -17.90805 -17.43729 -17.14945 -16.93013 -16.74551 -16.51532 -15.91800 -15.79516 -15.48923 -15.24947 -14.83356 -14.75134 -14.46437 -14.30487 -14.03973 -14.00029 -13.66846 -13.57192 -13.00057 -12.91684 -12.89729 -12.64432 -12.55160 -12.44566 -12.36288 -12.14305 -12.10953 -11.60416 -11.42401 -11.20708 -11.10932 -11.07713 -10.74343 -10.53137 -10.16225 -9.66266 -8.58510 -7.83316 -5.27445 -0.09536 1.19153 1.38162 1.41617 1.48025 1.48640 2.08832 2.27899 2.49326 2.95777 3.32526 3.58943 3.62093 3.81498 3.86794 3.99757 4.07611 4.16300 4.19070 4.27705 4.46064 4.51557 4.56402 4.60347 4.62107 4.71053 4.74632 4.78759 4.84542 4.90799 4.93945 5.01607 5.04725 5.09378 5.23933 5.29832 5.32006 5.53239 5.55934 5.61923 5.69751 5.72472 5.80825 6.08221 6.43397 6.50647 7.08847 7.17827 7.92081 8.42802 9.22228 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.010805 B = 0.004478 C = 0.004143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2590.880336 B = 6251.819592 C = 6756.595723 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.142 3.858 4 C 0.002 3.998 5 C -0.190 4.190 6 C -0.133 4.133 7 C -0.085 4.085 8 C 0.593 3.407 9 O -0.566 6.566 10 N -0.679 5.679 11 C 0.124 3.876 12 H 0.073 0.927 13 C -0.110 4.110 14 C -0.121 4.121 15 C 0.154 3.846 16 H 0.018 0.982 17 C -0.128 4.128 18 N -0.596 5.596 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.053 4.053 22 N -0.935 5.935 23 Si 0.947 3.053 24 H -0.283 1.283 25 H -0.303 1.303 26 H -0.269 1.269 27 C 0.172 3.828 28 O -0.165 6.165 29 H 0.098 0.902 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.192 0.808 35 H 0.164 0.836 36 H 0.408 0.592 37 H 0.085 0.915 38 H 0.080 0.920 39 H 0.057 0.943 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.035 0.965 43 H 0.048 0.952 44 H 0.243 0.757 45 H 0.004 0.996 46 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.269 -10.617 -3.791 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.066 3.934 4 C -0.050 4.050 5 C -0.209 4.209 6 C -0.154 4.154 7 C -0.138 4.138 8 C 0.379 3.621 9 O -0.448 6.448 10 N -0.328 5.328 11 C 0.019 3.981 12 H 0.091 0.909 13 C -0.148 4.148 14 C -0.160 4.160 15 C 0.049 3.951 16 H 0.036 0.964 17 C -0.186 4.186 18 N -0.320 5.320 19 C -0.369 4.369 20 H 0.091 0.909 21 C -0.248 4.248 22 N -0.582 5.582 23 Si 0.776 3.224 24 H -0.209 1.209 25 H -0.230 1.230 26 H -0.194 1.194 27 C 0.045 3.955 28 O -0.061 6.061 29 H 0.116 0.884 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.209 0.791 35 H 0.182 0.818 36 H 0.244 0.756 37 H 0.103 0.897 38 H 0.098 0.902 39 H 0.075 0.925 40 H 0.111 0.889 41 H 0.095 0.905 42 H 0.055 0.945 43 H 0.067 0.933 44 H 0.052 0.948 45 H 0.022 0.978 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.369 -10.749 -3.801 20.777 hybrid contribution 0.225 1.413 -0.685 1.586 sum -17.144 -9.337 -4.486 20.031 Atomic orbital electron populations 1.23017 0.78091 1.04287 1.01665 1.87934 1.22421 1.27100 1.95816 1.20952 0.81719 0.86016 1.04732 1.23026 0.94350 1.03657 0.83961 1.21947 0.90896 1.06817 1.01209 1.22223 1.00009 1.00619 0.92538 1.22062 0.82219 1.14304 0.95182 1.16822 0.85980 0.76768 0.82498 1.90821 1.23676 1.53361 1.76898 1.45720 1.11323 1.71272 1.04442 1.21668 0.87723 0.98148 0.90608 0.90905 1.21677 1.00198 0.99105 0.93835 1.21972 0.97417 0.95205 1.01375 1.20767 0.94039 0.93402 0.86883 0.96433 1.21723 0.97580 0.98849 1.00403 1.44284 1.48761 1.17574 1.21367 1.19384 0.96045 0.95121 1.26326 0.90873 1.25704 0.95029 1.00320 1.03731 1.70156 1.02154 1.43051 1.42804 0.85559 0.77874 0.80465 0.78501 1.20935 1.23010 1.19417 1.20870 0.89650 0.88584 0.96440 1.83981 1.15977 1.70241 1.35925 0.88396 0.92800 0.91837 0.90156 0.86325 0.79117 0.81827 0.75550 0.89687 0.90169 0.92475 0.88923 0.90499 0.94532 0.93315 0.94769 0.97814 0.93428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 11.01 113.37 1.25 1.51 16 2 O -0.41 -7.95 10.69 -148.98 -1.59 -9.54 16 3 C 0.14 2.47 6.46 71.24 0.46 2.93 16 4 C 0.00 0.06 6.94 24.97 0.17 0.23 16 5 C -0.19 -4.70 10.77 22.07 0.24 -4.46 16 6 C -0.13 -4.23 10.62 22.39 0.24 -3.99 16 7 C -0.09 -3.13 7.13 24.07 0.17 -2.96 16 8 C 0.59 25.03 7.75 86.44 0.67 25.70 16 9 O -0.57 -27.60 16.53 -4.35 -0.07 -27.67 16 10 N -0.68 -26.16 4.91 -446.15 -2.19 -28.35 16 11 C 0.12 4.88 2.81 45.07 0.13 5.00 16 12 H 0.07 2.94 7.58 -2.39 -0.02 2.93 16 13 C -0.11 -3.28 5.59 30.62 0.17 -3.11 16 14 C -0.12 -3.54 5.21 30.67 0.16 -3.38 16 15 C 0.15 5.91 3.50 44.98 0.16 6.06 16 16 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 17 C -0.13 -4.41 7.95 71.98 0.57 -3.84 16 18 N -0.60 -29.01 2.91 -675.04 -1.96 -30.97 16 19 C -0.24 -12.89 8.60 84.03 0.72 -12.17 16 20 H 0.07 3.82 6.21 -2.91 -0.02 3.80 16 21 C -0.05 -3.06 4.93 84.86 0.42 -2.64 16 22 N -0.93 -58.08 11.22 21.65 0.24 -57.83 16 23 Si 0.95 46.95 29.58 68.60 2.03 48.98 16 24 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.30 -15.56 7.11 99.48 0.71 -14.85 16 26 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 27 C 0.17 8.59 4.89 86.35 0.42 9.01 16 28 O -0.17 -5.39 10.40 -5.01 -0.05 -5.45 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.19 3.17 8.06 -2.91 -0.02 3.15 16 35 H 0.16 4.94 8.06 -2.91 -0.02 4.92 16 36 H 0.41 14.26 6.53 -92.71 -0.61 13.66 16 37 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 39 H 0.06 1.68 6.40 -2.39 -0.02 1.67 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 42 H 0.04 1.41 7.66 -2.39 -0.02 1.39 16 43 H 0.05 1.69 7.40 -2.39 -0.02 1.68 16 44 H 0.24 14.94 8.31 -92.71 -0.77 14.17 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.05 2.86 6.12 -2.38 -0.01 2.84 16 Total: -1.00 -75.64 373.59 2.73 -72.90 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.38 Total: 24.02 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: 5.95 Total: 13.90 kcal Atomic # 7 Polarization: -113.24 SS G_CDS: -3.91 Total: -117.15 kcal Atomic # 8 Polarization: -40.94 SS G_CDS: -1.72 Total: -42.66 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Total: -75.64 2.73 -72.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071671036.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.852 kcal (2) G-P(sol) polarization free energy of solvation -75.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 9.79 seconds