Wall clock time and date at job start Tue Mar 31 2020 15:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99788 * 2 1 4 4 C 1.50703 * 109.47045 * 180.02562 * 3 2 1 5 5 C 1.35130 * 125.61724 * 89.99744 * 4 3 2 6 6 C 1.40359 * 107.11353 * 179.97438 * 5 4 3 7 7 C 1.36542 * 106.71042 * 0.02562 * 6 5 4 8 8 C 1.46656 * 125.98875 * 179.97438 * 7 6 5 9 9 O 1.21695 * 120.00143 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00058 * 180.02562 * 8 7 6 11 11 C 1.46504 * 120.00114 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.52395 * 34.91808 * 11 10 8 13 13 C 1.53040 * 109.49883 * 154.99700 * 11 10 8 14 14 C 1.53031 * 109.53903 * 181.31441 * 13 11 10 15 15 C 1.53185 * 109.31745 * 298.63651 * 14 13 11 16 16 H 1.09005 * 109.58564 * 294.84722 * 15 14 13 17 17 C 1.52993 * 109.59194 * 174.56258 * 15 14 13 18 18 N 1.46933 * 108.77405 * 54.63060 * 15 14 13 19 19 C 1.36940 * 120.62932 * 126.37697 * 18 15 14 20 20 H 1.08004 * 119.99750 * 330.90227 * 19 18 15 21 21 C 1.38807 * 120.00313 * 150.90923 * 19 18 15 22 22 N 1.31618 * 120.00261 * 160.72765 * 21 19 18 23 23 Si 1.86804 * 119.99714 * 340.72628 * 21 19 18 24 24 H 1.48498 * 109.46932 * 92.33603 * 23 21 19 25 25 H 1.48497 * 109.46797 * 212.33544 * 23 21 19 26 26 H 1.48502 * 109.47149 * 332.33574 * 23 21 19 27 27 C 1.46923 * 118.73880 * 306.39572 * 18 15 14 28 28 O 1.33928 * 125.61504 * 270.24478 * 4 3 2 29 29 H 1.09002 * 109.46768 * 300.00010 * 1 2 3 30 30 H 1.09001 * 109.47015 * 60.00065 * 1 2 3 31 31 H 1.09001 * 109.46679 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47210 * 60.00145 * 3 2 1 33 33 H 1.09008 * 109.46934 * 300.00145 * 3 2 1 34 34 H 1.08004 * 126.43941 * 359.97438 * 5 4 3 35 35 H 1.08007 * 126.64360 * 180.02562 * 6 5 4 36 36 H 0.97004 * 119.99874 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.46073 * 61.29278 * 13 11 10 38 38 H 1.09000 * 109.45964 * 301.33881 * 13 11 10 39 39 H 1.09003 * 109.50069 * 178.68023 * 14 13 11 40 40 H 1.09007 * 109.49659 * 58.58569 * 14 13 11 41 41 H 1.08999 * 109.47311 * 60.28326 * 17 15 14 42 42 H 1.09009 * 109.47278 * 180.28403 * 17 15 14 43 43 H 1.08999 * 109.47423 * 300.28096 * 17 15 14 44 44 H 0.96999 * 120.00064 * 180.02562 * 22 21 19 45 45 H 1.08999 * 109.58742 * 293.82020 * 27 18 15 46 46 H 1.08998 * 109.70152 * 173.46694 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5126 1.1866 -0.0006 5 6 4.2966 1.1246 -1.0995 6 6 5.6237 1.0201 -0.6546 7 6 5.5817 1.0230 0.7102 8 6 6.7375 0.9313 1.6082 9 8 7.8604 0.8421 1.1476 10 7 6.5561 0.9448 2.9436 11 6 7.7107 0.8526 3.8407 12 1 8.5584 1.3755 3.3982 13 6 7.3633 1.4908 5.1876 14 6 8.5793 1.4244 6.1143 15 6 8.9527 -0.0415 6.3559 16 1 8.1499 -0.5380 6.9009 17 6 10.2463 -0.1139 7.1697 18 7 9.1471 -0.7003 5.0570 19 6 10.3064 -1.3761 4.7840 20 1 11.2310 -1.0739 5.2534 21 6 10.2933 -2.4494 3.9039 22 7 11.4138 -2.8571 3.3464 23 14 8.6855 -3.3154 3.5108 24 1 8.0753 -2.7022 2.3038 25 1 8.9479 -4.7546 3.2561 26 1 7.7552 -3.1776 4.6601 27 6 8.0741 -0.6198 4.0565 28 8 4.2901 1.1202 1.0878 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.9645 1.1506 -2.1268 35 1 6.5071 0.9507 -1.2722 36 1 5.6610 1.0155 3.3108 37 1 6.5313 0.9520 5.6410 38 1 7.0804 2.5322 5.0337 39 1 8.3387 1.9000 7.0651 40 1 9.4190 1.9419 5.6503 41 1 10.0999 0.3812 8.1296 42 1 10.5129 -1.1577 7.3362 43 1 11.0478 0.3829 6.6231 44 1 11.4045 -3.6069 2.7312 45 1 7.1996 -1.1635 4.4140 46 1 8.4149 -1.0537 3.1165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071671037.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:52:43 Heat of formation + Delta-G solvation = -36.821115 kcal Electronic energy + Delta-G solvation = -27782.186850 eV Core-core repulsion = 23867.788484 eV Total energy + Delta-G solvation = -3914.398366 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 25.74 seconds Orbital eigenvalues (eV) -42.84973 -39.58727 -38.27443 -37.82836 -34.71614 -33.31401 -32.79663 -31.67338 -30.72197 -30.63683 -27.79489 -26.42791 -25.71149 -24.79803 -22.93642 -22.31072 -21.75084 -20.72283 -20.21809 -19.38937 -18.25771 -17.20946 -16.56628 -16.53743 -16.19688 -16.06290 -15.91953 -15.17388 -14.60450 -14.38376 -14.24037 -13.98721 -13.69488 -13.47277 -13.26723 -13.15104 -13.07000 -13.00210 -12.41516 -12.29076 -12.11482 -11.88807 -11.69757 -11.46963 -11.26078 -10.79852 -10.70757 -10.36314 -10.26569 -10.24536 -10.17856 -10.12956 -9.89250 -9.66084 -9.37388 -8.96732 -8.72844 -8.46696 -6.88757 -5.87257 -3.25326 0.89791 2.07352 2.41003 3.21862 3.32152 3.43966 3.54347 3.56238 3.59190 4.33381 4.58783 4.61780 4.67557 4.79243 4.86662 4.89692 4.94848 5.02098 5.17243 5.24071 5.24675 5.46290 5.50014 5.52725 5.61561 5.72239 5.74560 5.93321 6.01409 6.12223 6.19251 6.24363 6.27364 6.35536 6.46947 6.53315 6.56266 6.56988 6.60937 6.73994 6.84551 7.01692 7.11108 7.63538 8.03511 8.27390 8.42709 9.00099 9.80020 10.15715 11.28268 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.014844 B = 0.003404 C = 0.003182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.817110 B = 8224.838056 C = 8797.102541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.142 3.858 4 C 0.001 3.999 5 C -0.189 4.189 6 C -0.128 4.128 7 C -0.056 4.056 8 C 0.595 3.405 9 O -0.504 6.504 10 N -0.713 5.713 11 C 0.124 3.876 12 H 0.095 0.905 13 C -0.117 4.117 14 C -0.127 4.127 15 C 0.168 3.832 16 H 0.030 0.970 17 C -0.137 4.137 18 N -0.597 5.597 19 C -0.261 4.261 20 H 0.093 0.907 21 C 0.029 3.971 22 N -0.906 5.906 23 Si 0.877 3.123 24 H -0.287 1.287 25 H -0.303 1.303 26 H -0.272 1.272 27 C 0.120 3.880 28 O -0.157 6.157 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.091 0.909 32 H 0.071 0.929 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.164 0.836 36 H 0.399 0.601 37 H 0.061 0.939 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.064 0.936 43 H 0.058 0.942 44 H 0.262 0.738 45 H 0.025 0.975 46 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.516 11.879 -3.781 24.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.066 3.934 4 C -0.051 4.051 5 C -0.209 4.209 6 C -0.149 4.149 7 C -0.109 4.109 8 C 0.379 3.621 9 O -0.380 6.380 10 N -0.363 5.363 11 C 0.019 3.981 12 H 0.113 0.887 13 C -0.155 4.155 14 C -0.167 4.167 15 C 0.062 3.938 16 H 0.048 0.952 17 C -0.194 4.194 18 N -0.321 5.321 19 C -0.389 4.389 20 H 0.111 0.889 21 C -0.170 4.170 22 N -0.548 5.548 23 Si 0.708 3.292 24 H -0.215 1.215 25 H -0.231 1.231 26 H -0.197 1.197 27 C -0.007 4.007 28 O -0.053 6.053 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.233 0.767 37 H 0.080 0.920 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.085 0.915 41 H 0.059 0.941 42 H 0.083 0.917 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.042 0.958 46 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.547 11.515 -3.859 23.868 hybrid contribution -1.599 -0.409 -0.471 1.716 sum -22.146 11.106 -4.329 25.151 Atomic orbital electron populations 1.22813 0.80021 1.03419 1.00269 1.88021 1.20292 1.26551 1.95498 1.20706 0.84160 0.85982 1.02570 1.22158 0.92689 1.05812 0.84476 1.21611 0.92423 1.07164 0.99675 1.21993 0.98640 1.01204 0.93060 1.22390 0.81864 1.11618 0.94987 1.16584 0.85911 0.77722 0.81873 1.90964 1.21834 1.49375 1.75815 1.46068 1.11229 1.73653 1.05353 1.21892 0.87501 0.99973 0.88706 0.88670 1.21688 0.99118 0.99750 0.94924 1.22051 0.97201 0.99353 0.98080 1.20515 0.96056 0.90371 0.86832 0.95233 1.21807 0.97735 1.02477 0.97410 1.44364 1.17055 1.61461 1.09231 1.18897 0.86254 1.07979 1.25820 0.88950 1.25287 0.96043 0.97327 0.98328 1.69808 1.26194 1.28514 1.30329 0.87022 0.85410 0.78572 0.78246 1.21487 1.23136 1.19683 1.21702 0.91654 0.92723 0.94602 1.83986 1.16368 1.70134 1.34770 0.93632 0.93655 0.89093 0.91094 0.89605 0.82478 0.81842 0.76655 0.92027 0.92311 0.92101 0.91506 0.94082 0.91706 0.92316 0.92787 0.95755 0.90235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.38 -3.79 10.69 -35.23 -0.38 -4.17 16 3 C 0.14 1.14 6.46 36.01 0.23 1.37 16 4 C 0.00 0.01 6.94 -35.41 -0.25 -0.24 16 5 C -0.19 -2.14 10.77 -39.89 -0.43 -2.57 16 6 C -0.13 -1.79 10.62 -39.40 -0.42 -2.21 16 7 C -0.06 -0.87 7.13 -36.80 -0.26 -1.14 16 8 C 0.59 10.95 7.75 -12.86 -0.10 10.85 16 9 O -0.50 -11.30 16.53 5.19 0.09 -11.21 16 10 N -0.71 -11.82 5.08 -55.01 -0.28 -12.10 16 11 C 0.12 2.33 2.60 -67.81 -0.18 2.15 16 12 H 0.10 2.01 7.58 -51.93 -0.39 1.62 16 13 C -0.12 -1.75 5.35 -26.69 -0.14 -1.90 16 14 C -0.13 -2.02 5.37 -26.62 -0.14 -2.17 16 15 C 0.17 3.27 3.49 -67.60 -0.24 3.03 16 16 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 17 C -0.14 -2.51 7.95 37.15 0.30 -2.21 16 18 N -0.60 -14.37 2.75 -164.78 -0.45 -14.82 16 19 C -0.26 -7.38 9.05 -15.06 -0.14 -7.51 16 20 H 0.09 2.72 6.40 -52.48 -0.34 2.38 16 21 C 0.03 0.89 5.24 -17.43 -0.09 0.79 16 22 N -0.91 -28.74 13.97 55.49 0.78 -27.96 16 23 Si 0.88 23.76 24.34 -169.99 -4.14 19.62 16 24 H -0.29 -7.89 6.63 56.52 0.37 -7.52 16 25 H -0.30 -8.27 7.11 56.52 0.40 -7.87 16 26 H -0.27 -7.13 6.63 56.52 0.37 -6.76 16 27 C 0.12 2.77 3.77 -3.71 -0.01 2.75 16 28 O -0.16 -2.16 10.40 5.01 0.05 -2.10 16 29 H 0.05 0.21 8.14 -51.93 -0.42 -0.21 16 30 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.16 1.30 8.06 -52.48 -0.42 0.87 16 35 H 0.16 2.16 8.06 -52.48 -0.42 1.74 16 36 H 0.40 5.38 8.36 -40.82 -0.34 5.04 16 37 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 1.30 7.65 -51.92 -0.40 0.90 16 43 H 0.06 1.13 7.43 -51.93 -0.39 0.75 16 44 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 45 H 0.02 0.56 7.03 -51.93 -0.37 0.19 16 46 H 0.08 2.13 4.62 -51.93 -0.24 1.89 16 LS Contribution 370.70 15.07 5.59 5.59 Total: -1.00 -35.53 370.70 -6.65 -42.17 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.14 Total: 2.70 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -0.76 Total: 2.30 kcal Atomic # 7 Polarization: -54.93 SS G_CDS: 0.04 Total: -54.89 kcal Atomic # 8 Polarization: -17.25 SS G_CDS: -0.24 Total: -17.49 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -4.14 Total: 19.62 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.53 -6.65 -42.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071671037.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.353 kcal (2) G-P(sol) polarization free energy of solvation -35.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 25.74 seconds