Wall clock time and date at job start Tue Mar 31 2020 15:53:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42894 * 114.00326 * 2 1 4 4 C 1.50695 * 109.47611 * 179.97438 * 3 2 1 5 5 C 1.35128 * 125.61442 * 89.99527 * 4 3 2 6 6 C 1.40368 * 107.11228 * 179.97438 * 5 4 3 7 7 C 1.36541 * 106.70844 * 0.24437 * 6 5 4 8 8 C 1.46658 * 125.98521 * 179.73581 * 7 6 5 9 9 O 1.21693 * 120.00456 * 0.02562 * 8 7 6 10 10 N 1.34773 * 119.99826 * 179.97438 * 8 7 6 11 11 C 1.46504 * 120.00084 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.49534 * 325.06973 * 11 10 8 13 13 C 1.53038 * 109.49702 * 205.00362 * 11 10 8 14 14 C 1.53042 * 109.53713 * 178.68601 * 13 11 10 15 15 C 1.53189 * 109.31667 * 61.36447 * 14 13 11 16 16 H 1.09004 * 109.58767 * 65.29291 * 15 14 13 17 17 C 1.53000 * 109.59116 * 185.57936 * 15 14 13 18 18 N 1.46933 * 108.77398 * 305.36587 * 15 14 13 19 19 C 1.36930 * 120.63310 * 233.62792 * 18 15 14 20 20 H 1.07998 * 119.99894 * 29.01195 * 19 18 15 21 21 C 1.38808 * 120.00112 * 209.01480 * 19 18 15 22 22 N 1.31620 * 120.00010 * 15.00960 * 21 19 18 23 23 Si 1.86807 * 119.99975 * 195.01481 * 21 19 18 24 24 H 1.48500 * 109.46877 * 59.99894 * 23 21 19 25 25 H 1.48503 * 109.47023 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46837 * 299.99877 * 23 21 19 27 27 C 1.46928 * 118.73654 * 53.60915 * 18 15 14 28 28 O 1.33932 * 125.61758 * 269.97462 * 4 3 2 29 29 H 1.09005 * 109.47136 * 60.00343 * 1 2 3 30 30 H 1.09003 * 109.47624 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47475 * 300.00056 * 1 2 3 32 32 H 1.09002 * 109.47025 * 59.99682 * 3 2 1 33 33 H 1.09003 * 109.46810 * 300.00268 * 3 2 1 34 34 H 1.07999 * 126.44877 * 359.97438 * 5 4 3 35 35 H 1.08002 * 126.64507 * 179.97438 * 6 5 4 36 36 H 0.97006 * 120.00319 * 0.02562 * 10 8 7 37 37 H 1.08996 * 109.46396 * 298.70379 * 13 11 10 38 38 H 1.09004 * 109.46530 * 58.67998 * 13 11 10 39 39 H 1.09000 * 109.49981 * 181.32014 * 14 13 11 40 40 H 1.09002 * 109.49517 * 301.41306 * 14 13 11 41 41 H 1.09007 * 109.46628 * 60.00136 * 17 15 14 42 42 H 1.08997 * 109.47326 * 179.97438 * 17 15 14 43 43 H 1.08998 * 109.46540 * 300.00383 * 17 15 14 44 44 H 0.97003 * 119.99778 * 180.02562 * 22 21 19 45 45 H 1.08996 * 109.58641 * 186.60511 * 27 18 15 46 46 H 1.09000 * 109.59050 * 66.17666 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2973 1.1240 -1.0976 6 6 5.6242 1.0197 -0.6516 7 6 5.5806 1.0182 0.7132 8 6 6.7353 0.9201 1.6121 9 8 7.8584 0.8300 1.1524 10 7 6.5525 0.9306 2.9473 11 6 7.7059 0.8332 3.8453 12 1 8.4591 0.1826 3.4008 13 6 7.2593 0.2535 5.1894 14 6 8.4693 0.1208 6.1170 15 6 9.0723 1.5070 6.3648 16 1 8.3597 2.1228 6.9136 17 6 10.3618 1.3679 7.1765 18 7 9.3712 2.1312 5.0686 19 6 10.6240 2.6136 4.7989 20 1 11.4876 2.1663 5.2685 21 6 10.7841 3.6776 3.9219 22 7 9.7458 4.4107 3.5802 23 14 12.4733 4.0688 3.2266 24 1 12.9789 2.8978 2.4661 25 1 12.3763 5.2420 2.3213 26 1 13.4072 4.3773 4.3392 27 6 8.3003 2.2276 4.0673 28 8 4.2896 1.1255 1.0897 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6885 1.8463 -0.8900 34 1 3.9662 1.1496 -2.1252 35 1 6.5079 0.9493 -1.2684 36 1 5.6572 1.0028 3.3138 37 1 6.5239 0.9169 5.6446 38 1 6.8137 -0.7286 5.0314 39 1 8.1545 -0.3139 7.0657 40 1 9.2157 -0.5228 5.6514 41 1 11.0748 0.7561 6.6237 42 1 10.7894 2.3551 7.3513 43 1 10.1399 0.8931 8.1322 44 1 9.8577 5.1540 2.9670 45 1 8.7095 2.6038 3.1298 46 1 7.5238 2.9029 4.4266 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071671038.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:23 Heat of formation + Delta-G solvation = -66.124552 kcal Electronic energy + Delta-G solvation = -27607.904326 eV Core-core repulsion = 23692.235268 eV Total energy + Delta-G solvation = -3915.669058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 6.62 seconds Orbital eigenvalues (eV) -43.81689 -40.90484 -39.24789 -38.81322 -36.16626 -34.71166 -34.23341 -32.77560 -31.93651 -31.66191 -28.60912 -27.66911 -26.92381 -26.22692 -24.15639 -23.49926 -22.71294 -22.07618 -21.39256 -20.94570 -19.38930 -18.36385 -17.91552 -17.42847 -17.34868 -16.94449 -16.80754 -16.59275 -15.90180 -15.75157 -15.44665 -15.25251 -14.98311 -14.82656 -14.51860 -14.32474 -14.07825 -14.05297 -13.57934 -13.51051 -13.09387 -12.90030 -12.78034 -12.70806 -12.57535 -12.35825 -12.30905 -12.14467 -12.03109 -11.73128 -11.54699 -11.24898 -11.15272 -11.12919 -10.73598 -10.54074 -10.28424 -9.71224 -8.63714 -7.85269 -5.31670 -0.14336 1.16231 1.40736 1.42861 1.47081 1.51074 2.02728 2.12494 2.50886 2.95040 3.31019 3.53267 3.67935 3.80363 3.84979 3.93715 4.06692 4.18514 4.23232 4.28822 4.36441 4.49361 4.56012 4.57577 4.60990 4.69777 4.72595 4.77680 4.83991 4.87445 4.91803 5.00149 5.05316 5.15678 5.23931 5.28964 5.29739 5.36217 5.54616 5.60253 5.69744 5.73550 5.77918 6.09150 6.38149 6.45759 7.01078 7.15915 7.88980 8.38634 9.20001 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016020 B = 0.003135 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1747.385098 B = 8928.715470 C =10120.788080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.141 3.859 4 C 0.007 3.993 5 C -0.190 4.190 6 C -0.129 4.129 7 C -0.087 4.087 8 C 0.594 3.406 9 O -0.560 6.560 10 N -0.697 5.697 11 C 0.129 3.871 12 H 0.058 0.942 13 C -0.108 4.108 14 C -0.117 4.117 15 C 0.152 3.848 16 H 0.022 0.978 17 C -0.129 4.129 18 N -0.602 5.602 19 C -0.251 4.251 20 H 0.077 0.923 21 C -0.056 4.056 22 N -0.935 5.935 23 Si 0.959 3.041 24 H -0.285 1.285 25 H -0.297 1.297 26 H -0.267 1.267 27 C 0.180 3.820 28 O -0.163 6.163 29 H 0.063 0.937 30 H 0.096 0.904 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.120 0.880 34 H 0.191 0.809 35 H 0.162 0.838 36 H 0.413 0.587 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.046 0.954 42 H 0.038 0.962 43 H 0.079 0.921 44 H 0.245 0.755 45 H 0.045 0.955 46 H -0.002 1.002 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.448 -9.235 -4.197 22.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.065 3.935 4 C -0.045 4.045 5 C -0.209 4.209 6 C -0.149 4.149 7 C -0.139 4.139 8 C 0.380 3.620 9 O -0.441 6.441 10 N -0.346 5.346 11 C 0.023 3.977 12 H 0.076 0.924 13 C -0.146 4.146 14 C -0.156 4.156 15 C 0.047 3.953 16 H 0.040 0.960 17 C -0.187 4.187 18 N -0.326 5.326 19 C -0.381 4.381 20 H 0.094 0.906 21 C -0.250 4.250 22 N -0.582 5.582 23 Si 0.787 3.213 24 H -0.211 1.211 25 H -0.223 1.223 26 H -0.193 1.193 27 C 0.052 3.948 28 O -0.059 6.059 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.073 0.927 32 H 0.102 0.898 33 H 0.137 0.863 34 H 0.209 0.791 35 H 0.180 0.820 36 H 0.250 0.750 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.098 0.902 44 H 0.054 0.946 45 H 0.064 0.936 46 H 0.016 0.984 Dipole moment (debyes) X Y Z Total from point charges -19.621 -9.319 -4.232 22.130 hybrid contribution 0.668 1.018 -0.671 1.390 sum -18.953 -8.301 -4.903 21.264 Atomic orbital electron populations 1.23010 0.78075 1.04234 1.01700 1.87935 1.22417 1.27246 1.95830 1.20983 0.81587 0.85995 1.04930 1.23031 0.94313 1.03303 0.83860 1.21962 0.90808 1.06773 1.01326 1.22243 1.00063 1.00057 0.92577 1.21889 0.82118 1.14961 0.94939 1.16893 0.86061 0.76610 0.82390 1.90887 1.24026 1.52375 1.76813 1.45853 1.11351 1.72589 1.04854 1.21689 0.86808 0.98897 0.90268 0.92375 1.21665 0.98791 1.01368 0.92808 1.21956 0.96592 0.97241 0.99835 1.20827 0.95928 0.92605 0.85934 0.95996 1.21734 0.96935 1.00881 0.99103 1.44309 1.08332 1.68886 1.11104 1.19461 0.85573 1.08908 1.24171 0.90574 1.25831 1.00114 0.96271 1.02828 1.70158 1.30884 1.19417 1.37692 0.85462 0.80741 0.76718 0.78344 1.21149 1.22349 1.19279 1.20760 0.89161 0.91359 0.93490 1.83968 1.15777 1.70328 1.35857 0.91831 0.88579 0.92689 0.89803 0.86265 0.79135 0.81992 0.75042 0.90863 0.89677 0.88401 0.92704 0.93458 0.94299 0.90199 0.94648 0.93616 0.98444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -6.99 10.69 -148.98 -1.59 -8.58 16 3 C 0.14 1.98 6.46 71.23 0.46 2.44 16 4 C 0.01 0.16 6.94 24.97 0.17 0.33 16 5 C -0.19 -4.13 10.77 22.07 0.24 -3.89 16 6 C -0.13 -3.74 10.62 22.39 0.24 -3.50 16 7 C -0.09 -2.89 7.13 24.07 0.17 -2.72 16 8 C 0.59 23.90 7.75 86.44 0.67 24.57 16 9 O -0.56 -27.56 16.53 -4.33 -0.07 -27.63 16 10 N -0.70 -25.27 5.08 -446.14 -2.26 -27.53 16 11 C 0.13 5.26 2.61 45.07 0.12 5.38 16 12 H 0.06 2.70 7.58 -2.39 -0.02 2.68 16 13 C -0.11 -3.35 5.35 30.62 0.16 -3.19 16 14 C -0.12 -3.70 5.37 30.67 0.16 -3.53 16 15 C 0.15 6.12 3.50 44.97 0.16 6.28 16 16 H 0.02 0.91 8.14 -2.38 -0.02 0.89 16 17 C -0.13 -4.67 7.95 71.98 0.57 -4.10 16 18 N -0.60 -31.01 2.99 -675.22 -2.02 -33.03 16 19 C -0.25 -14.21 8.61 84.03 0.72 -13.48 16 20 H 0.08 4.13 6.20 -2.91 -0.02 4.11 16 21 C -0.06 -3.29 4.96 84.86 0.42 -2.87 16 22 N -0.94 -58.89 11.14 21.65 0.24 -58.65 16 23 Si 0.96 48.04 29.58 68.60 2.03 50.07 16 24 H -0.28 -14.22 7.11 99.48 0.71 -13.51 16 25 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 26 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 27 C 0.18 9.25 4.86 86.36 0.42 9.67 16 28 O -0.16 -4.63 10.40 -5.00 -0.05 -4.68 16 29 H 0.06 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.05 0.37 8.14 -2.39 -0.02 0.35 16 32 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.12 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.19 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.16 4.58 8.06 -2.91 -0.02 4.56 16 36 H 0.41 12.19 8.36 -92.70 -0.77 11.42 16 37 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 38 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.10 2.35 8.14 -2.39 -0.02 2.33 16 40 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.05 1.75 7.40 -2.38 -0.02 1.73 16 42 H 0.04 1.55 7.66 -2.39 -0.02 1.53 16 43 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 44 H 0.24 15.14 8.31 -92.71 -0.77 14.37 16 45 H 0.05 2.82 6.06 -2.39 -0.01 2.81 16 46 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 Total: -1.00 -78.96 377.00 2.42 -76.54 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.21 Total: 20.63 kcal Atomic # 6 Polarization: 6.92 SS G_CDS: 5.94 Total: 12.86 kcal Atomic # 7 Polarization: -115.17 SS G_CDS: -4.04 Total: -119.21 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -1.72 Total: -40.89 kcal Atomic # 14 Polarization: 48.04 SS G_CDS: 2.03 Total: 50.07 kcal Total: -78.96 2.42 -76.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071671038.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.414 kcal (2) G-P(sol) polarization free energy of solvation -78.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.538 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.62 seconds