Wall clock time and date at job start Tue Mar 31 2020 16:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00002 * 2 1 4 4 C 1.50697 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.35132 * 125.61772 * 90.01531 * 4 3 2 6 6 C 1.40364 * 107.11374 * 179.70911 * 5 4 3 7 7 C 1.36549 * 106.71049 * 0.40539 * 6 5 4 8 8 C 1.46656 * 125.98697 * 179.85390 * 7 6 5 9 9 O 1.21691 * 120.00106 * 359.71738 * 8 7 6 10 10 N 1.34780 * 119.99605 * 179.72138 * 8 7 6 11 11 C 1.46494 * 119.99906 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47421 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.64237 * 51.85302 * 12 11 10 14 14 C 1.54326 * 110.71925 * 288.52034 * 12 11 10 15 15 N 1.47289 * 107.30567 * 219.44929 * 14 12 11 16 16 C 1.36939 * 125.79099 * 178.92134 * 15 14 12 17 17 H 1.07998 * 120.00321 * 341.52190 * 16 15 14 18 18 C 1.38813 * 119.99574 * 161.52468 * 16 15 14 19 19 N 1.31625 * 119.99502 * 157.60956 * 18 16 15 20 20 Si 1.86792 * 120.00162 * 337.61051 * 18 16 15 21 21 H 1.48498 * 109.47196 * 84.54220 * 20 18 16 22 22 H 1.48510 * 109.47106 * 204.53762 * 20 18 16 23 23 H 1.48492 * 109.47267 * 324.53766 * 20 18 16 24 24 C 1.47425 * 108.55940 * 358.92931 * 15 14 12 25 25 C 1.54905 * 104.93059 * 24.14922 * 24 15 14 26 26 H 1.09002 * 111.00084 * 81.05229 * 25 24 15 27 27 C 1.53000 * 111.00767 * 204.86435 * 25 24 15 28 28 O 1.33929 * 125.61596 * 269.97027 * 4 3 2 29 29 H 1.09000 * 109.47401 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47840 * 300.00816 * 1 2 3 31 31 H 1.09007 * 109.46753 * 60.00921 * 1 2 3 32 32 H 1.08997 * 109.47175 * 59.99298 * 3 2 1 33 33 H 1.08998 * 109.47007 * 299.99457 * 3 2 1 34 34 H 1.07998 * 126.44118 * 359.95991 * 5 4 3 35 35 H 1.08003 * 126.64560 * 180.30194 * 6 5 4 36 36 H 0.96996 * 120.00163 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47611 * 59.99268 * 11 10 8 38 38 H 1.09005 * 109.46663 * 299.99604 * 11 10 8 39 39 H 1.09004 * 109.87914 * 338.85849 * 14 12 11 40 40 H 1.09005 * 109.87981 * 100.02465 * 14 12 11 41 41 H 0.97002 * 119.99552 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.35958 * 265.25653 * 24 15 14 43 43 H 1.08996 * 110.36836 * 143.04665 * 24 15 14 44 44 H 1.09003 * 109.46789 * 58.54581 * 27 25 24 45 45 H 1.08990 * 109.47448 * 178.54686 * 27 25 24 46 46 H 1.08995 * 109.46907 * 298.55250 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2974 1.1244 -1.0975 6 6 5.6247 1.0260 -0.6515 7 6 5.5811 1.0239 0.7133 8 6 6.7363 0.9333 1.6122 9 8 7.8596 0.8452 1.1525 10 7 6.5538 0.9474 2.9475 11 6 7.7077 0.8575 3.8455 12 6 7.2280 0.8954 5.2978 13 1 6.4487 0.1518 5.4647 14 6 6.7296 2.3074 5.6715 15 7 7.1807 2.5816 7.0465 16 6 6.9620 3.7388 7.7453 17 1 6.6923 4.6436 7.2209 18 6 7.0870 3.7488 9.1278 19 7 7.3173 4.8804 9.7595 20 14 6.9286 2.1566 10.0915 21 1 8.2384 1.4572 10.1108 22 1 6.5089 2.4600 11.4834 23 1 5.9124 1.2867 9.4467 24 6 7.9082 1.4007 7.5460 25 6 8.4141 0.6760 6.2738 26 1 9.3239 1.1415 5.8948 27 6 8.6348 -0.8140 6.5424 28 8 4.2895 1.1256 1.0897 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.9662 1.1502 -2.1251 35 1 6.5090 0.9625 -1.2683 36 1 5.6585 1.0179 3.3139 37 1 8.3772 1.6979 3.6623 38 1 8.2387 -0.0767 3.6622 39 1 7.1545 3.0432 4.9887 40 1 5.6410 2.3406 5.6250 41 1 7.4043 4.8875 10.7256 42 1 7.2375 0.7527 8.1103 43 1 8.7494 1.7081 8.1673 44 1 7.7011 -1.2647 6.8789 45 1 8.9651 -1.3033 5.6262 46 1 9.3954 -0.9353 7.3136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001092806332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:56 Heat of formation + Delta-G solvation = -40.027160 kcal Electronic energy + Delta-G solvation = -26913.050844 eV Core-core repulsion = 22998.513454 eV Total energy + Delta-G solvation = -3914.537391 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.99165 -39.69836 -38.37067 -38.24136 -34.96932 -33.46404 -33.01994 -31.66808 -31.12122 -29.97497 -27.84627 -26.39385 -25.94450 -25.38332 -23.08923 -22.08194 -21.88865 -20.72941 -20.22730 -19.76211 -18.46596 -17.28025 -16.86244 -16.62371 -16.28992 -16.24005 -16.02477 -15.38859 -15.12813 -14.75802 -14.39640 -14.09403 -13.72294 -13.38698 -13.28377 -13.24935 -13.13795 -12.96927 -12.91318 -12.56887 -12.35872 -12.09965 -11.93717 -11.51815 -11.39796 -11.14976 -10.92164 -10.60411 -10.51769 -10.32505 -10.30674 -10.26743 -9.97034 -9.84123 -9.44089 -9.25092 -8.85217 -8.68254 -7.04690 -5.94825 -3.25010 0.73116 1.92739 2.26609 3.02241 3.04728 3.34298 3.47455 3.49672 3.50750 4.24509 4.50106 4.54513 4.58584 4.71120 4.75118 4.83955 4.87237 4.92892 4.95408 4.97447 5.11880 5.22291 5.33640 5.41735 5.46989 5.48211 5.55909 5.62392 5.72975 5.87507 5.90224 6.02711 6.03952 6.07866 6.20288 6.26605 6.37418 6.49591 6.51742 6.58181 6.64035 6.74217 6.79745 7.34994 7.70408 7.94980 8.31075 8.83097 9.68633 10.17817 11.21402 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.002745 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.068440 B =10196.184300 C =11161.447112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.139 3.861 4 C 0.010 3.990 5 C -0.193 4.193 6 C -0.125 4.125 7 C -0.062 4.062 8 C 0.601 3.399 9 O -0.521 6.521 10 N -0.712 5.712 11 C 0.131 3.869 12 C -0.112 4.112 13 H 0.082 0.918 14 C 0.139 3.861 15 N -0.609 5.609 16 C -0.241 4.241 17 H 0.091 0.909 18 C 0.021 3.979 19 N -0.909 5.909 20 Si 0.883 3.117 21 H -0.284 1.284 22 H -0.303 1.303 23 H -0.277 1.277 24 C 0.116 3.884 25 C -0.096 4.096 26 H 0.083 0.917 27 C -0.141 4.141 28 O -0.154 6.154 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.045 0.955 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.407 0.593 37 H 0.076 0.924 38 H 0.072 0.928 39 H 0.036 0.964 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.026 0.974 43 H 0.059 0.941 44 H 0.054 0.946 45 H 0.054 0.946 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.980 -11.156 -21.367 26.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.305 6.305 3 C 0.063 3.937 4 C -0.042 4.042 5 C -0.212 4.212 6 C -0.146 4.146 7 C -0.115 4.115 8 C 0.386 3.614 9 O -0.400 6.400 10 N -0.362 5.362 11 C 0.008 3.992 12 C -0.132 4.132 13 H 0.101 0.899 14 C 0.014 3.986 15 N -0.336 5.336 16 C -0.368 4.368 17 H 0.109 0.891 18 C -0.177 4.177 19 N -0.553 5.553 20 Si 0.713 3.287 21 H -0.211 1.211 22 H -0.231 1.231 23 H -0.203 1.203 24 C -0.009 4.009 25 C -0.116 4.116 26 H 0.102 0.898 27 C -0.199 4.199 28 O -0.050 6.050 29 H 0.109 0.891 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.242 0.758 37 H 0.095 0.905 38 H 0.090 0.910 39 H 0.054 0.946 40 H 0.047 0.953 41 H 0.073 0.927 42 H 0.044 0.956 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.073 0.927 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.152 -11.181 -21.139 25.606 hybrid contribution -0.826 -0.549 0.719 1.225 sum -9.978 -11.730 -20.420 25.576 Atomic orbital electron populations 1.22820 0.79863 1.03420 1.00445 1.87983 1.20429 1.26500 1.95547 1.20747 0.84045 0.86052 1.02896 1.22207 0.92797 1.04859 0.84330 1.21622 0.92370 1.07494 0.99756 1.21963 0.98591 1.01081 0.92937 1.22214 0.82051 1.12412 0.94805 1.16519 0.85865 0.77315 0.81659 1.90886 1.22067 1.50806 1.76197 1.45979 1.11772 1.73209 1.05280 1.21530 0.87436 1.02616 0.87588 1.22539 0.98876 0.99243 0.92512 0.89947 1.21467 0.96828 0.92363 0.87957 1.44809 1.62200 1.14457 1.12131 1.18634 1.43423 0.85749 0.89020 0.89099 1.24996 1.00216 0.96389 0.96121 1.69851 1.50988 1.25678 1.08739 0.86969 0.78313 0.84633 0.78742 1.21137 1.23083 1.20306 1.22016 0.95376 0.89046 0.94453 1.22309 0.97369 0.95645 0.96271 0.89849 1.21731 1.01706 0.95197 1.01256 1.84014 1.16294 1.69911 1.34769 0.89085 0.93466 0.93619 0.90796 0.89474 0.82416 0.81925 0.75753 0.90524 0.90966 0.94645 0.95271 0.92713 0.95606 0.92261 0.92724 0.92705 0.92466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.37 10.69 -35.23 -0.38 -3.74 16 3 C 0.14 1.00 6.46 36.00 0.23 1.24 16 4 C 0.01 0.10 6.94 -35.41 -0.25 -0.14 16 5 C -0.19 -1.79 10.77 -39.89 -0.43 -2.22 16 6 C -0.13 -1.38 10.62 -39.39 -0.42 -1.80 16 7 C -0.06 -0.79 7.13 -36.80 -0.26 -1.05 16 8 C 0.60 8.50 7.79 -12.86 -0.10 8.40 16 9 O -0.52 -8.72 16.86 5.20 0.09 -8.63 16 10 N -0.71 -9.23 5.47 -61.63 -0.34 -9.56 16 11 C 0.13 1.78 5.02 -4.05 -0.02 1.76 16 12 C -0.11 -1.70 2.43 -88.79 -0.22 -1.92 16 13 H 0.08 1.17 8.01 -51.93 -0.42 0.75 16 14 C 0.14 2.67 6.77 -2.92 -0.02 2.65 16 15 N -0.61 -14.68 3.21 -169.86 -0.55 -15.22 16 16 C -0.24 -6.88 10.58 -15.06 -0.16 -7.04 16 17 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 18 C 0.02 0.62 5.43 -17.43 -0.09 0.53 16 19 N -0.91 -28.20 13.97 55.49 0.78 -27.42 16 20 Si 0.88 22.66 24.27 -169.99 -4.13 18.53 16 21 H -0.28 -7.00 6.48 56.52 0.37 -6.63 16 22 H -0.30 -7.87 7.11 56.52 0.40 -7.47 16 23 H -0.28 -7.00 6.65 56.52 0.38 -6.62 16 24 C 0.12 2.49 4.16 -2.53 -0.01 2.48 16 25 C -0.10 -1.56 3.09 -88.47 -0.27 -1.83 16 26 H 0.08 1.33 8.05 -51.93 -0.42 0.91 16 27 C -0.14 -1.87 9.29 37.16 0.35 -1.53 16 28 O -0.15 -1.85 10.40 5.00 0.05 -1.80 16 29 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.16 1.01 8.06 -52.49 -0.42 0.59 16 35 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 36 H 0.41 4.77 8.23 -40.82 -0.34 4.44 16 37 H 0.08 1.13 7.93 -51.93 -0.41 0.71 16 38 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.04 0.69 7.68 -51.93 -0.40 0.29 16 40 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 41 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 42 H 0.03 0.58 5.47 -51.93 -0.28 0.30 16 43 H 0.06 1.37 6.63 -51.93 -0.34 1.03 16 44 H 0.05 0.71 8.11 -51.93 -0.42 0.29 16 45 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 378.47 15.07 5.70 5.70 Total: -1.00 -34.59 378.47 -6.62 -41.21 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -7.30 Total: 0.13 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: -0.56 Total: 0.80 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.11 Total: -52.21 kcal Atomic # 8 Polarization: -13.94 SS G_CDS: -0.24 Total: -14.17 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -4.13 Total: 18.53 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -34.59 -6.62 -41.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092806332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.186 kcal (2) G-P(sol) polarization free energy of solvation -34.589 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds