Wall clock time and date at job start Tue Mar 31 2020 16:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42902 * 114.00002 * 2 1 4 4 C 1.50697 * 109.47030 * 179.97438 * 3 2 1 5 5 C 1.35132 * 125.61772 * 90.01531 * 4 3 2 6 6 C 1.40364 * 107.11374 * 179.70911 * 5 4 3 7 7 C 1.36549 * 106.71049 * 0.40539 * 6 5 4 8 8 C 1.46656 * 125.98697 * 179.85390 * 7 6 5 9 9 O 1.21691 * 120.00106 * 359.71738 * 8 7 6 10 10 N 1.34780 * 119.99605 * 179.72138 * 8 7 6 11 11 C 1.46494 * 119.99906 * 180.02562 * 10 8 7 12 12 C 1.52996 * 109.47421 * 179.97438 * 11 10 8 13 13 H 1.08996 * 110.64237 * 51.85302 * 12 11 10 14 14 C 1.54326 * 110.71925 * 288.52034 * 12 11 10 15 15 N 1.47289 * 107.30567 * 219.44929 * 14 12 11 16 16 C 1.36939 * 125.79099 * 178.92134 * 15 14 12 17 17 H 1.07998 * 120.00321 * 341.52190 * 16 15 14 18 18 C 1.38813 * 119.99574 * 161.52468 * 16 15 14 19 19 N 1.31625 * 119.99502 * 157.60956 * 18 16 15 20 20 Si 1.86792 * 120.00162 * 337.61051 * 18 16 15 21 21 H 1.48498 * 109.47196 * 84.54220 * 20 18 16 22 22 H 1.48510 * 109.47106 * 204.53762 * 20 18 16 23 23 H 1.48492 * 109.47267 * 324.53766 * 20 18 16 24 24 C 1.47425 * 108.55940 * 358.92931 * 15 14 12 25 25 C 1.54905 * 104.93059 * 24.14922 * 24 15 14 26 26 H 1.09002 * 111.00084 * 81.05229 * 25 24 15 27 27 C 1.53000 * 111.00767 * 204.86435 * 25 24 15 28 28 O 1.33929 * 125.61596 * 269.97027 * 4 3 2 29 29 H 1.09000 * 109.47401 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47840 * 300.00816 * 1 2 3 31 31 H 1.09007 * 109.46753 * 60.00921 * 1 2 3 32 32 H 1.08997 * 109.47175 * 59.99298 * 3 2 1 33 33 H 1.08998 * 109.47007 * 299.99457 * 3 2 1 34 34 H 1.07998 * 126.44118 * 359.95991 * 5 4 3 35 35 H 1.08003 * 126.64560 * 180.30194 * 6 5 4 36 36 H 0.96996 * 120.00163 * 359.97438 * 10 8 7 37 37 H 1.09000 * 109.47611 * 59.99268 * 11 10 8 38 38 H 1.09005 * 109.46663 * 299.99604 * 11 10 8 39 39 H 1.09004 * 109.87914 * 338.85849 * 14 12 11 40 40 H 1.09005 * 109.87981 * 100.02465 * 14 12 11 41 41 H 0.97002 * 119.99552 * 179.97438 * 19 18 16 42 42 H 1.09001 * 110.35958 * 265.25653 * 24 15 14 43 43 H 1.08996 * 110.36836 * 143.04665 * 24 15 14 44 44 H 1.09003 * 109.46789 * 58.54581 * 27 25 24 45 45 H 1.08990 * 109.47448 * 178.54686 * 27 25 24 46 46 H 1.08995 * 109.46907 * 298.55250 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2974 1.1244 -1.0975 6 6 5.6247 1.0260 -0.6515 7 6 5.5811 1.0239 0.7133 8 6 6.7363 0.9333 1.6122 9 8 7.8596 0.8452 1.1525 10 7 6.5538 0.9474 2.9475 11 6 7.7077 0.8575 3.8455 12 6 7.2280 0.8954 5.2978 13 1 6.4487 0.1518 5.4647 14 6 6.7296 2.3074 5.6715 15 7 7.1807 2.5816 7.0465 16 6 6.9620 3.7388 7.7453 17 1 6.6923 4.6436 7.2209 18 6 7.0870 3.7488 9.1278 19 7 7.3173 4.8804 9.7595 20 14 6.9286 2.1566 10.0915 21 1 8.2384 1.4572 10.1108 22 1 6.5089 2.4600 11.4834 23 1 5.9124 1.2867 9.4467 24 6 7.9082 1.4007 7.5460 25 6 8.4141 0.6760 6.2738 26 1 9.3239 1.1415 5.8948 27 6 8.6348 -0.8140 6.5424 28 8 4.2895 1.1256 1.0897 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8898 31 1 -0.3633 0.5137 -0.8901 32 1 1.6885 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.9662 1.1502 -2.1251 35 1 6.5090 0.9625 -1.2683 36 1 5.6585 1.0179 3.3139 37 1 8.3772 1.6979 3.6623 38 1 8.2387 -0.0767 3.6622 39 1 7.1545 3.0432 4.9887 40 1 5.6410 2.3406 5.6250 41 1 7.4043 4.8875 10.7256 42 1 7.2375 0.7527 8.1103 43 1 8.7494 1.7081 8.1673 44 1 7.7011 -1.2647 6.8789 45 1 8.9651 -1.3033 5.6262 46 1 9.3954 -0.9353 7.3136 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001092806332.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:55 Heat of formation + Delta-G solvation = -65.405633 kcal Electronic energy + Delta-G solvation = -26914.151337 eV Core-core repulsion = 22998.513454 eV Total energy + Delta-G solvation = -3915.637884 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -43.80617 -40.85346 -39.75029 -38.82844 -36.27452 -34.86062 -34.20035 -32.98962 -32.44767 -31.22814 -28.66524 -27.76411 -27.13170 -26.34497 -24.45789 -23.22795 -22.73404 -22.09042 -21.46703 -20.97664 -19.51485 -18.85008 -17.93595 -17.46732 -17.32397 -17.02139 -16.93982 -16.71771 -16.55604 -15.98547 -15.48389 -15.27951 -15.04792 -14.81433 -14.56966 -14.33893 -14.15648 -14.06273 -14.00581 -13.58451 -13.54306 -13.29361 -12.90797 -12.85924 -12.69874 -12.54171 -12.37637 -12.28769 -11.79587 -11.73373 -11.69214 -11.38061 -11.25673 -11.11359 -10.81748 -10.75289 -10.32876 -9.69554 -9.07684 -8.20433 -5.47033 -0.14737 1.16235 1.29105 1.36969 1.45169 1.46374 2.02880 2.06214 2.39620 2.94635 3.00551 3.25520 3.52628 3.64853 3.73492 3.74664 3.81958 3.86697 4.18373 4.24723 4.28333 4.33002 4.46711 4.51603 4.55213 4.58309 4.59209 4.69155 4.72182 4.74112 4.78530 4.85701 4.89823 4.90476 5.00303 5.05602 5.13908 5.27914 5.31317 5.32391 5.47810 5.65111 5.75184 6.07174 6.07664 6.33335 6.73622 6.90365 7.51340 8.08382 8.99648 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.013858 B = 0.002745 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.068440 B =10196.184300 C =11161.447112 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.414 6.414 3 C 0.137 3.863 4 C 0.006 3.994 5 C -0.191 4.191 6 C -0.122 4.122 7 C -0.093 4.093 8 C 0.602 3.398 9 O -0.554 6.554 10 N -0.707 5.707 11 C 0.140 3.860 12 C -0.093 4.093 13 H 0.103 0.897 14 C 0.134 3.866 15 N -0.630 5.630 16 C -0.237 4.237 17 H 0.056 0.944 18 C -0.038 4.038 19 N -0.957 5.957 20 Si 0.948 3.052 21 H -0.267 1.267 22 H -0.308 1.308 23 H -0.267 1.267 24 C 0.108 3.892 25 C -0.086 4.086 26 H 0.085 0.915 27 C -0.136 4.136 28 O -0.167 6.167 29 H 0.096 0.904 30 H 0.052 0.948 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.119 0.881 34 H 0.189 0.811 35 H 0.171 0.829 36 H 0.414 0.586 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.028 0.972 40 H 0.032 0.968 41 H 0.263 0.737 42 H 0.027 0.973 43 H 0.037 0.963 44 H 0.060 0.940 45 H 0.081 0.919 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.022 -13.815 -23.132 29.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.061 3.939 4 C -0.046 4.046 5 C -0.210 4.210 6 C -0.143 4.143 7 C -0.145 4.145 8 C 0.389 3.611 9 O -0.435 6.435 10 N -0.357 5.357 11 C 0.017 3.983 12 C -0.112 4.112 13 H 0.121 0.879 14 C 0.010 3.990 15 N -0.356 5.356 16 C -0.365 4.365 17 H 0.074 0.926 18 C -0.233 4.233 19 N -0.604 5.604 20 Si 0.777 3.223 21 H -0.193 1.193 22 H -0.237 1.237 23 H -0.193 1.193 24 C -0.017 4.017 25 C -0.106 4.106 26 H 0.103 0.897 27 C -0.194 4.194 28 O -0.064 6.064 29 H 0.114 0.886 30 H 0.071 0.929 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.137 0.863 34 H 0.206 0.794 35 H 0.189 0.811 36 H 0.250 0.750 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.046 0.954 40 H 0.051 0.949 41 H 0.072 0.928 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.079 0.921 45 H 0.100 0.900 46 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.213 -13.877 -22.929 28.682 hybrid contribution -0.583 0.374 1.135 1.330 sum -10.796 -13.503 -21.794 27.819 Atomic orbital electron populations 1.22999 0.78181 1.04212 1.01627 1.87928 1.22313 1.27315 1.95819 1.20996 0.82197 0.85962 1.04750 1.22946 0.94111 1.03497 0.84056 1.21985 0.91280 1.06662 1.01102 1.22267 0.99854 0.99641 0.92525 1.22005 0.82159 1.15192 0.95114 1.16668 0.85960 0.76587 0.81882 1.90858 1.23365 1.52524 1.76751 1.45909 1.11928 1.72828 1.05053 1.21381 0.87424 1.02971 0.86492 1.22404 0.98882 0.96705 0.93181 0.87928 1.21632 0.97045 0.94989 0.85338 1.44931 1.63082 1.14054 1.13548 1.18570 1.41998 0.86570 0.89386 0.92634 1.25659 1.00805 0.99642 0.97149 1.69982 1.53393 1.28120 1.08911 0.85913 0.79092 0.80688 0.76637 1.19324 1.23655 1.19274 1.22155 0.94364 0.88360 0.96814 1.22264 0.97442 0.97407 0.93489 0.89692 1.21722 1.02327 0.92495 1.02833 1.83993 1.16155 1.70358 1.35852 0.88594 0.92950 0.91753 0.90219 0.86319 0.79391 0.81140 0.75012 0.91824 0.89246 0.95424 0.94941 0.92827 0.95523 0.94474 0.92134 0.90048 0.92059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 113.37 1.25 1.45 16 2 O -0.41 -6.38 10.69 -148.98 -1.59 -7.97 16 3 C 0.14 1.65 6.46 71.24 0.46 2.11 16 4 C 0.01 0.11 6.94 24.97 0.17 0.28 16 5 C -0.19 -3.12 10.77 22.07 0.24 -2.88 16 6 C -0.12 -2.54 10.62 22.39 0.24 -2.30 16 7 C -0.09 -2.28 7.13 24.07 0.17 -2.11 16 8 C 0.60 16.65 7.79 86.44 0.67 17.32 16 9 O -0.55 -18.30 16.86 -4.32 -0.07 -18.37 16 10 N -0.71 -17.45 5.47 -467.11 -2.55 -20.00 16 11 C 0.14 3.54 5.02 86.38 0.43 3.97 16 12 C -0.09 -2.59 2.43 -9.61 -0.02 -2.61 16 13 H 0.10 2.53 8.01 -2.39 -0.02 2.51 16 14 C 0.13 5.10 6.77 86.68 0.59 5.68 16 15 N -0.63 -30.42 3.21 -691.30 -2.22 -32.64 16 16 C -0.24 -13.92 10.58 84.03 0.89 -13.03 16 17 H 0.06 3.56 8.06 -2.91 -0.02 3.53 16 18 C -0.04 -2.29 5.43 84.86 0.46 -1.83 16 19 N -0.96 -61.47 13.97 21.65 0.30 -61.17 16 20 Si 0.95 47.31 24.27 68.60 1.66 48.98 16 21 H -0.27 -12.49 6.48 99.48 0.65 -11.84 16 22 H -0.31 -15.51 7.11 99.48 0.71 -14.80 16 23 H -0.27 -12.77 6.65 99.48 0.66 -12.11 16 24 C 0.11 4.47 4.16 86.85 0.36 4.83 16 25 C -0.09 -2.58 3.09 -9.40 -0.03 -2.61 16 26 H 0.08 2.54 8.05 -2.39 -0.02 2.52 16 27 C -0.14 -3.08 9.29 71.98 0.67 -2.41 16 28 O -0.17 -3.85 10.40 -5.03 -0.05 -3.91 16 29 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.06 0.27 8.14 -2.38 -0.02 0.25 16 32 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.12 0.65 8.14 -2.39 -0.02 0.64 16 34 H 0.19 1.76 8.06 -2.91 -0.02 1.74 16 35 H 0.17 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.41 9.16 8.23 -92.71 -0.76 8.39 16 37 H 0.06 1.80 7.93 -2.39 -0.02 1.79 16 38 H 0.09 2.02 8.14 -2.38 -0.02 2.01 16 39 H 0.03 1.09 7.68 -2.39 -0.02 1.07 16 40 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 42 H 0.03 1.13 5.47 -2.39 -0.01 1.12 16 43 H 0.04 1.69 6.63 -2.39 -0.02 1.68 16 44 H 0.06 1.32 8.11 -2.39 -0.02 1.30 16 45 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 Total: -1.00 -77.48 378.47 2.14 -75.34 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 0.11 Total: 13.87 kcal Atomic # 6 Polarization: -0.68 SS G_CDS: 6.55 Total: 5.87 kcal Atomic # 7 Polarization: -109.34 SS G_CDS: -4.47 Total: -113.81 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -1.72 Total: -30.25 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 1.66 Total: 48.98 kcal Total: -77.48 2.14 -75.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001092806332.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.938 kcal (2) G-P(sol) polarization free energy of solvation -77.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds