Wall clock time and date at job start Tue Mar 31 2020 16:27:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 109.47243 * 2 1 4 4 C 1.53004 * 109.47137 * 240.00434 * 2 1 3 5 5 C 1.50700 * 109.47208 * 64.99916 * 4 2 1 6 6 O 1.21283 * 119.99803 * 359.97438 * 5 4 2 7 7 N 1.34777 * 119.99675 * 180.27843 * 5 4 2 8 8 C 1.46497 * 119.99525 * 179.72583 * 7 5 4 9 9 C 1.52999 * 109.46992 * 179.97438 * 8 7 5 10 10 H 1.09000 * 110.88881 * 51.11704 * 9 8 7 11 11 C 1.54919 * 111.00590 * 287.19549 * 9 8 7 12 12 N 1.47418 * 104.83141 * 204.91590 * 11 9 8 13 13 C 1.36943 * 125.64827 * 204.08446 * 12 11 9 14 14 H 1.08001 * 119.99202 * 0.02562 * 13 12 11 15 15 C 1.38808 * 120.00056 * 180.02562 * 13 12 11 16 16 N 1.31617 * 120.00325 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99699 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46745 * 90.00048 * 17 15 13 19 19 H 1.48496 * 109.46853 * 209.99589 * 17 15 13 20 20 H 1.48500 * 109.47054 * 329.99974 * 17 15 13 21 21 C 1.47029 * 108.70753 * 24.12886 * 12 11 9 22 22 C 1.54324 * 107.26673 * 358.94035 * 21 12 11 23 23 H 1.08998 * 110.72295 * 96.17173 * 22 21 12 24 24 C 1.52999 * 110.86883 * 219.37321 * 22 21 12 25 25 C 1.52998 * 109.47234 * 120.00477 * 2 1 3 26 26 F 1.39893 * 109.47527 * 180.02562 * 25 2 1 27 27 F 1.39909 * 109.46863 * 300.00065 * 25 2 1 28 28 F 1.39901 * 109.47307 * 59.99473 * 25 2 1 29 29 H 1.08996 * 109.47118 * 300.00234 * 1 2 3 30 30 H 1.09000 * 109.46939 * 59.99651 * 1 2 3 31 31 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.46730 * 304.99822 * 4 2 1 33 33 H 1.08998 * 109.46846 * 185.00367 * 4 2 1 34 34 H 0.97000 * 119.99894 * 359.71837 * 7 5 4 35 35 H 1.08995 * 109.47421 * 299.99467 * 8 7 5 36 36 H 1.09001 * 109.47621 * 60.00103 * 8 7 5 37 37 H 1.09000 * 110.36184 * 323.75493 * 11 9 8 38 38 H 1.08999 * 110.36505 * 86.07339 * 11 9 8 39 39 H 0.97001 * 119.99944 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.87826 * 239.52054 * 21 12 11 41 41 H 1.08996 * 109.88157 * 118.35388 * 21 12 11 42 42 H 1.09006 * 109.47165 * 173.61260 * 24 22 21 43 43 H 1.08999 * 109.47293 * 293.60978 * 24 22 21 44 44 H 1.08996 * 109.47168 * 53.61257 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 -1.2493 5 6 1.6414 0.0572 -2.4766 6 8 1.0109 1.0871 -2.3632 7 7 1.9801 -0.3944 -3.7005 8 6 1.5874 0.3591 -4.8938 9 6 2.0931 -0.3646 -6.1433 10 1 1.8008 -1.4146 -6.1293 11 6 3.6284 -0.2167 -6.2876 12 7 3.8897 -0.3822 -7.7290 13 6 5.0738 -0.7887 -8.2840 14 1 5.9165 -1.0192 -7.6491 15 6 5.1907 -0.9044 -9.6622 16 7 4.1635 -0.6239 -10.4358 17 14 6.8063 -1.4582 -10.4192 18 1 6.8129 -2.9380 -10.5437 19 1 6.9575 -0.8477 -11.7644 20 1 7.9323 -1.0293 -9.5514 21 6 2.6687 -0.0376 -8.4722 22 6 1.5901 0.3355 -7.4334 23 1 1.5462 1.4156 -7.2939 24 6 0.2224 -0.2109 -7.8477 25 6 2.0401 -0.7213 1.2492 26 9 3.4390 -0.7209 1.2495 27 9 1.5737 -0.0619 2.3915 28 9 1.5737 -2.0403 1.2492 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6054 -1.7198 -1.2952 33 1 3.1264 -0.7994 -1.2056 34 1 2.4841 -1.2183 -3.7911 35 1 0.5009 0.4368 -4.9333 36 1 2.0217 1.3580 -4.8522 37 1 3.9471 0.7713 -5.9553 38 1 4.1395 -0.9927 -5.7178 39 1 4.2454 -0.7044 -11.3990 40 1 2.3378 -0.8944 -9.0590 41 1 2.8612 0.8115 -9.1279 42 1 -0.4969 -0.0341 -7.0479 43 1 -0.1111 0.2940 -8.7543 44 1 0.3007 -1.2816 -8.0359 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102311430.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:22 Heat of formation + Delta-G solvation = -206.867321 kcal Electronic energy + Delta-G solvation = -27731.788646 eV Core-core repulsion = 23268.159783 eV Total energy + Delta-G solvation = -4463.628863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.09992 -48.58906 -48.55898 -40.98948 -39.61393 -36.42732 -35.69397 -34.65612 -32.53162 -31.15870 -29.02297 -27.74917 -27.26355 -26.38104 -24.43122 -22.67261 -21.61576 -21.53515 -20.61692 -19.58666 -19.33288 -18.84039 -18.53286 -17.59140 -17.10748 -16.71143 -16.57181 -16.07714 -15.59151 -15.55116 -15.49906 -15.01090 -14.97541 -14.81600 -14.73756 -14.67718 -14.49813 -14.28348 -14.15656 -13.95027 -13.45564 -13.39698 -13.11061 -13.07926 -12.83041 -12.68904 -12.40191 -12.34728 -12.31086 -12.24272 -11.92966 -11.82689 -11.53434 -11.38303 -11.34448 -10.79576 -10.68951 -10.01654 -8.87986 -7.83880 -5.19237 1.46310 1.47854 1.56433 1.64118 1.69347 2.21780 2.50038 2.84089 3.03824 3.08430 3.34287 3.62632 3.64212 3.76874 3.87951 3.96281 3.97518 4.01663 4.26261 4.40939 4.52348 4.56887 4.57097 4.63411 4.75983 4.81680 4.87055 4.89625 4.95944 4.99437 5.11153 5.18079 5.27012 5.37007 5.43744 5.48718 5.54161 5.73454 5.83454 6.21722 6.57223 7.11847 7.25490 7.79957 8.44091 9.26296 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019979 B = 0.002450 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.130352 B =11427.529774 C =12478.117052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 H 0.119 0.881 4 C -0.140 4.140 5 C 0.519 3.481 6 O -0.573 6.573 7 N -0.717 5.717 8 C 0.145 3.855 9 C -0.090 4.090 10 H 0.090 0.910 11 C 0.137 3.863 12 N -0.630 5.630 13 C -0.241 4.241 14 H 0.083 0.917 15 C -0.068 4.068 16 N -0.951 5.951 17 Si 0.977 3.023 18 H -0.285 1.285 19 H -0.297 1.297 20 H -0.269 1.269 21 C 0.191 3.809 22 C -0.101 4.101 23 H 0.073 0.927 24 C -0.127 4.127 25 C 0.457 3.543 26 F -0.187 7.187 27 F -0.188 7.188 28 F -0.183 7.183 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.073 0.927 32 H 0.129 0.871 33 H 0.123 0.877 34 H 0.414 0.586 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.017 0.983 38 H 0.050 0.950 39 H 0.246 0.754 40 H 0.016 0.984 41 H -0.003 1.003 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.561 -1.780 22.418 24.063 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.134 4.134 3 H 0.137 0.863 4 C -0.180 4.180 5 C 0.307 3.693 6 O -0.453 6.453 7 N -0.368 5.368 8 C 0.021 3.979 9 C -0.110 4.110 10 H 0.108 0.892 11 C 0.012 3.988 12 N -0.356 5.356 13 C -0.370 4.370 14 H 0.101 0.899 15 C -0.261 4.261 16 N -0.601 5.601 17 Si 0.805 3.195 18 H -0.211 1.211 19 H -0.224 1.224 20 H -0.194 1.194 21 C 0.066 3.934 22 C -0.121 4.121 23 H 0.091 0.909 24 C -0.185 4.185 25 C 0.403 3.597 26 F -0.169 7.169 27 F -0.169 7.169 28 F -0.164 7.164 29 H 0.089 0.911 30 H 0.101 0.899 31 H 0.092 0.908 32 H 0.147 0.853 33 H 0.141 0.859 34 H 0.251 0.749 35 H 0.094 0.906 36 H 0.075 0.925 37 H 0.035 0.965 38 H 0.068 0.932 39 H 0.055 0.945 40 H 0.034 0.966 41 H 0.016 0.984 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -8.891 -1.106 22.325 24.056 hybrid contribution 1.401 -0.550 -0.882 1.744 sum -7.491 -1.655 21.443 22.774 Atomic orbital electron populations 1.21959 0.90855 1.03841 1.04618 1.22127 1.00357 1.01541 0.89400 0.86315 1.21743 1.05242 1.01107 0.89890 1.20601 0.78604 0.85183 0.84958 1.90685 1.41538 1.26029 1.87034 1.45966 1.57366 1.28223 1.05277 1.21130 0.99966 0.94532 0.82257 1.22478 0.94941 1.00280 0.93278 0.89155 1.21785 0.94353 0.97812 0.84889 1.44806 1.09961 1.78881 1.01955 1.19468 0.89828 1.37031 0.90656 0.89885 1.25645 1.01010 1.02713 0.96708 1.70192 1.30787 1.55972 1.03112 0.85102 0.79376 0.77655 0.77348 1.21149 1.22370 1.19396 1.20983 0.84579 0.96304 0.91539 1.22308 0.95669 0.99614 0.94539 0.90864 1.21636 0.94837 1.00472 1.01511 1.20656 0.75175 0.77621 0.86217 1.93183 1.30444 1.96430 1.96812 1.93172 1.88522 1.80876 1.54324 1.93173 1.88411 1.38021 1.96823 0.91094 0.89868 0.90809 0.85312 0.85924 0.74940 0.90557 0.92460 0.96549 0.93210 0.94516 0.96612 0.98436 0.90435 0.92932 0.93313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.21 8.69 71.98 0.63 -1.59 16 2 C -0.11 -1.61 2.01 -10.79 -0.02 -1.63 16 3 H 0.12 1.80 7.96 -2.39 -0.02 1.78 16 4 C -0.14 -1.74 4.93 29.85 0.15 -1.60 16 5 C 0.52 9.96 7.55 87.66 0.66 10.62 16 6 O -0.57 -14.95 13.96 -3.04 -0.04 -14.99 16 7 N -0.72 -13.48 5.50 -463.07 -2.55 -16.02 16 8 C 0.15 3.43 5.13 86.38 0.44 3.88 16 9 C -0.09 -2.62 2.49 -9.40 -0.02 -2.64 16 10 H 0.09 2.51 8.05 -2.39 -0.02 2.49 16 11 C 0.14 5.08 6.65 86.86 0.58 5.66 16 12 N -0.63 -31.44 3.39 -691.97 -2.35 -33.79 16 13 C -0.24 -13.27 10.28 84.03 0.86 -12.41 16 14 H 0.08 4.34 7.83 -2.91 -0.02 4.32 16 15 C -0.07 -3.84 5.49 84.86 0.47 -3.37 16 16 N -0.95 -57.12 10.31 21.65 0.22 -56.90 16 17 Si 0.98 45.39 29.55 68.60 2.03 47.41 16 18 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 21 C 0.19 9.21 4.97 86.73 0.43 9.64 16 22 C -0.10 -3.45 3.01 -9.60 -0.03 -3.48 16 23 H 0.07 2.42 8.04 -2.39 -0.02 2.40 16 24 C -0.13 -3.57 9.17 71.98 0.66 -2.91 16 25 C 0.46 6.87 2.69 71.98 0.19 7.06 16 26 F -0.19 -3.08 16.71 44.97 0.75 -2.33 16 27 F -0.19 -3.19 16.80 44.97 0.76 -2.44 16 28 F -0.18 -2.79 16.37 44.97 0.74 -2.05 16 29 H 0.07 0.94 7.80 -2.39 -0.02 0.92 16 30 H 0.08 1.51 5.95 -2.39 -0.01 1.50 16 31 H 0.07 0.89 7.80 -2.39 -0.02 0.87 16 32 H 0.13 1.09 7.94 -2.38 -0.02 1.08 16 33 H 0.12 1.20 7.66 -2.39 -0.02 1.19 16 34 H 0.41 6.11 8.47 -92.71 -0.79 5.33 16 35 H 0.08 1.73 8.09 -2.39 -0.02 1.71 16 36 H 0.06 1.53 7.96 -2.39 -0.02 1.51 16 37 H 0.02 0.63 7.91 -2.39 -0.02 0.62 16 38 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.02 0.85 7.02 -2.39 -0.02 0.83 16 41 H 0.00 -0.15 7.51 -2.39 -0.02 -0.16 16 42 H 0.08 1.70 8.09 -2.38 -0.02 1.69 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.43 8.07 -2.39 -0.02 1.41 16 Total: -1.00 -69.05 363.73 4.78 -64.27 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: 0.23 Total: 9.61 kcal Atomic # 6 Polarization: 2.24 SS G_CDS: 5.00 Total: 7.23 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -4.67 Total: -106.71 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.04 Total: -14.99 kcal Atomic # 9 Polarization: -9.06 SS G_CDS: 2.24 Total: -6.82 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.41 kcal Total: -69.05 4.78 -64.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102311430.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.596 kcal (2) G-P(sol) polarization free energy of solvation -69.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds