Wall clock time and date at job start Tue Mar 31 2020 16:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47839 * 2 1 4 4 C 1.53006 * 109.46626 * 119.99931 * 2 1 3 5 5 C 1.50703 * 109.47148 * 294.99624 * 4 2 1 6 6 O 1.21279 * 119.99456 * 0.02562 * 5 4 2 7 7 N 1.34774 * 119.99766 * 180.02562 * 5 4 2 8 8 C 1.46504 * 119.99669 * 179.97438 * 7 5 4 9 9 C 1.52996 * 109.46900 * 180.02562 * 8 7 5 10 10 H 1.09004 * 110.89121 * 51.11624 * 9 8 7 11 11 C 1.54913 * 111.00172 * 287.19565 * 9 8 7 12 12 N 1.47426 * 104.83037 * 204.91523 * 11 9 8 13 13 C 1.36943 * 125.65053 * 204.08101 * 12 11 9 14 14 H 1.08000 * 119.99477 * 0.03397 * 13 12 11 15 15 C 1.38811 * 120.00238 * 180.02562 * 13 12 11 16 16 N 1.31618 * 119.99594 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 120.00156 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46848 * 59.99845 * 17 15 13 19 19 H 1.48495 * 109.47100 * 180.02562 * 17 15 13 20 20 H 1.48494 * 109.47140 * 300.00214 * 17 15 13 21 21 C 1.47026 * 108.70357 * 24.13460 * 12 11 9 22 22 C 1.54328 * 107.26989 * 358.93477 * 21 12 11 23 23 H 1.08998 * 110.71721 * 96.17275 * 22 21 12 24 24 C 1.52997 * 110.87038 * 219.37440 * 22 21 12 25 25 C 1.52997 * 109.46991 * 239.99553 * 2 1 3 26 26 F 1.39901 * 109.47234 * 300.00131 * 25 2 1 27 27 F 1.39895 * 109.47162 * 60.00576 * 25 2 1 28 28 F 1.39904 * 109.47177 * 180.02562 * 25 2 1 29 29 H 1.09000 * 109.47160 * 300.00438 * 1 2 3 30 30 H 1.09002 * 109.46719 * 60.00158 * 1 2 3 31 31 H 1.08993 * 109.47839 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47314 * 54.99967 * 4 2 1 33 33 H 1.09007 * 109.46744 * 174.99588 * 4 2 1 34 34 H 0.96996 * 120.00429 * 0.02562 * 7 5 4 35 35 H 1.08993 * 109.47097 * 300.00284 * 8 7 5 36 36 H 1.08996 * 109.46773 * 60.00404 * 8 7 5 37 37 H 1.08997 * 110.37179 * 323.75646 * 11 9 8 38 38 H 1.09007 * 110.36621 * 86.08396 * 11 9 8 39 39 H 0.97000 * 119.99680 * 180.02562 * 16 15 13 40 40 H 1.09004 * 109.87732 * 239.51901 * 21 12 11 41 41 H 1.08998 * 109.88092 * 118.35657 * 21 12 11 42 42 H 1.09003 * 109.46797 * 173.60992 * 24 22 21 43 43 H 1.08990 * 109.47498 * 293.61032 * 24 22 21 44 44 H 1.09002 * 109.47231 * 53.61499 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.6412 0.0571 2.4767 6 8 1.0109 1.0870 2.3632 7 7 1.9852 -0.3914 3.7002 8 6 1.5981 0.3657 4.8933 9 6 2.1090 -0.3550 6.1424 10 1 3.1706 -0.5849 6.0517 11 6 1.2843 -1.6366 6.4203 12 7 1.4298 -1.8724 7.8683 13 6 1.2908 -3.0804 8.4982 14 1 1.0548 -3.9645 7.9245 15 6 1.4533 -3.1686 9.8739 16 7 1.7406 -2.0911 10.5730 17 14 1.2643 -4.8165 10.7330 18 1 2.2619 -5.7741 10.1918 19 1 1.4847 -4.6426 12.1912 20 1 -0.1044 -5.3426 10.4991 21 6 1.7476 -0.5956 8.5243 22 6 1.8277 0.4794 7.4199 23 1 0.8813 1.0128 7.3316 24 6 2.9738 1.4559 7.6919 25 6 2.0399 -0.7213 -1.2492 26 9 1.5736 -2.0403 -1.2491 27 9 1.5737 -0.0619 -2.3915 28 9 3.4390 -0.7219 -1.2489 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6052 -1.7198 1.2953 33 1 3.1263 -0.7996 1.2057 34 1 2.4896 -1.2149 3.7908 35 1 2.0328 1.3641 4.8469 36 1 0.5118 0.4439 4.9372 37 1 0.2367 -1.4765 6.1654 38 1 1.6885 -2.4775 5.8566 39 1 1.8545 -2.1527 11.5343 40 1 2.7060 -0.6714 9.0381 41 1 0.9626 -0.3387 9.2355 42 1 3.0820 2.1339 6.8452 43 1 2.7557 2.0306 8.5919 44 1 3.9002 0.8989 7.8320 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102311431.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:25 Heat of formation + Delta-G solvation = -187.906567 kcal Electronic energy + Delta-G solvation = -27740.647746 eV Core-core repulsion = 23277.841083 eV Total energy + Delta-G solvation = -4462.806663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.41598 -47.89863 -47.87296 -40.06950 -38.14030 -35.53765 -34.62669 -32.99535 -30.77266 -29.94041 -28.04592 -26.60252 -25.94098 -24.99303 -22.93195 -21.82423 -20.61661 -20.04281 -19.30886 -18.83741 -18.62421 -17.87724 -16.92890 -16.53484 -16.10036 -15.94599 -14.95811 -14.94120 -14.77425 -14.34557 -14.30497 -14.24564 -14.04468 -14.00545 -13.80677 -13.62129 -13.38889 -13.24854 -12.97016 -12.56210 -12.53827 -11.92020 -11.78224 -11.70076 -11.63804 -11.55792 -11.42435 -11.25061 -10.83467 -10.80568 -10.26323 -10.08167 -10.03684 -9.94561 -9.72200 -9.58405 -9.05599 -8.62912 -6.86422 -5.74034 -3.07821 2.37563 2.48002 3.03187 3.38156 3.42604 3.43848 3.51418 3.72677 3.74067 4.30827 4.46444 4.49012 4.66226 4.88120 5.06652 5.12440 5.14321 5.17653 5.28306 5.45946 5.49526 5.52577 5.57852 5.71024 5.81374 5.94356 5.97914 6.05877 6.14212 6.23696 6.36822 6.44572 6.52565 6.58593 6.71564 6.89781 7.40532 7.53322 7.61014 7.80644 8.08488 8.23221 9.19162 9.79510 10.45394 11.37462 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.019918 B = 0.002439 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.456802 B =11478.423973 C =12344.016803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.116 4.116 3 H 0.122 0.878 4 C -0.147 4.147 5 C 0.518 3.482 6 O -0.541 6.541 7 N -0.721 5.721 8 C 0.132 3.868 9 C -0.113 4.113 10 H 0.080 0.920 11 C 0.142 3.858 12 N -0.606 5.606 13 C -0.230 4.230 14 H 0.077 0.923 15 C -0.008 4.008 16 N -0.922 5.922 17 Si 0.912 3.088 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.183 3.817 22 C -0.110 4.110 23 H 0.067 0.933 24 C -0.134 4.134 25 C 0.453 3.547 26 F -0.182 7.182 27 F -0.182 7.182 28 F -0.185 7.185 29 H 0.099 0.901 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.403 0.597 35 H 0.066 0.934 36 H 0.069 0.931 37 H 0.019 0.981 38 H 0.035 0.965 39 H 0.253 0.747 40 H 0.049 0.951 41 H 0.041 0.959 42 H 0.044 0.956 43 H 0.053 0.947 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.027 5.382 -20.974 21.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.136 4.136 3 H 0.141 0.859 4 C -0.187 4.187 5 C 0.304 3.696 6 O -0.419 6.419 7 N -0.372 5.372 8 C 0.009 3.991 9 C -0.133 4.133 10 H 0.099 0.901 11 C 0.016 3.984 12 N -0.332 5.332 13 C -0.359 4.359 14 H 0.094 0.906 15 C -0.204 4.204 16 N -0.569 5.569 17 Si 0.742 3.258 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.059 3.941 22 C -0.130 4.130 23 H 0.086 0.914 24 C -0.192 4.192 25 C 0.399 3.601 26 F -0.164 7.164 27 F -0.164 7.164 28 F -0.166 7.166 29 H 0.118 0.882 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.126 0.874 33 H 0.124 0.876 34 H 0.238 0.762 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.036 0.964 38 H 0.054 0.946 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.594 6.014 -20.820 21.730 hybrid contribution 0.314 -1.462 0.357 1.537 sum 1.908 4.553 -20.464 21.051 Atomic orbital electron populations 1.22017 0.90840 1.03534 1.05285 1.22156 1.00420 1.01623 0.89420 0.85949 1.21732 1.04014 1.00973 0.91942 1.20149 0.79501 0.85555 0.84433 1.90684 1.40058 1.24578 1.86604 1.46071 1.57262 1.27967 1.05862 1.21430 1.00275 0.94785 0.82633 1.22686 1.00404 0.97280 0.92955 0.90129 1.21584 0.95846 0.93640 0.87379 1.44457 1.83149 1.05170 1.00471 1.19001 1.41509 0.85161 0.90202 0.90551 1.24802 1.01883 0.97428 0.96283 1.69950 1.54350 1.26430 1.06157 0.86200 0.77914 0.82999 0.78649 1.21172 1.21590 1.21179 1.21225 1.00437 0.81919 0.90541 1.22438 0.97969 0.96865 0.95745 0.91448 1.21690 0.98387 0.98547 1.00553 1.20667 0.75371 0.77771 0.86330 1.93178 1.88425 1.37925 1.96823 1.93177 1.88465 1.80748 1.53963 1.93184 1.30169 1.96433 1.96813 0.88217 0.91435 0.91699 0.87364 0.87583 0.76215 0.91538 0.91262 0.96379 0.94640 0.93682 0.93298 0.94035 0.93680 0.92747 0.92711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.69 37.16 0.32 -1.02 16 2 C -0.12 -0.94 2.01 -90.62 -0.18 -1.12 16 3 H 0.12 1.00 7.95 -51.93 -0.41 0.58 16 4 C -0.15 -1.13 4.93 -27.88 -0.14 -1.27 16 5 C 0.52 5.63 7.55 -10.99 -0.08 5.55 16 6 O -0.54 -7.55 13.96 5.56 0.08 -7.47 16 7 N -0.72 -7.83 5.50 -60.30 -0.33 -8.16 16 8 C 0.13 1.73 5.13 -4.04 -0.02 1.71 16 9 C -0.11 -1.76 2.49 -88.47 -0.22 -1.98 16 10 H 0.08 1.23 8.05 -51.93 -0.42 0.82 16 11 C 0.14 2.71 6.65 -2.53 -0.02 2.70 16 12 N -0.61 -14.95 3.40 -170.06 -0.58 -15.52 16 13 C -0.23 -6.29 10.28 -15.06 -0.15 -6.44 16 14 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 15 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 16 N -0.92 -26.65 10.31 55.49 0.57 -26.08 16 17 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 18 H -0.29 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 20 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 21 C 0.18 4.28 4.97 -3.06 -0.02 4.27 16 22 C -0.11 -1.92 3.01 -88.78 -0.27 -2.18 16 23 H 0.07 1.14 8.04 -51.93 -0.42 0.72 16 24 C -0.13 -2.00 9.17 37.16 0.34 -1.66 16 25 C 0.45 3.87 2.69 37.16 0.10 3.97 16 26 F -0.18 -1.65 16.37 2.25 0.04 -1.62 16 27 F -0.18 -1.70 16.80 2.25 0.04 -1.66 16 28 F -0.18 -1.66 16.71 2.25 0.04 -1.62 16 29 H 0.10 1.02 5.95 -51.93 -0.31 0.71 16 30 H 0.07 0.52 7.80 -51.93 -0.41 0.11 16 31 H 0.06 0.51 7.80 -51.93 -0.41 0.10 16 32 H 0.11 0.71 7.94 -51.93 -0.41 0.30 16 33 H 0.11 0.66 7.66 -51.93 -0.40 0.26 16 34 H 0.40 3.66 8.47 -40.82 -0.35 3.32 16 35 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 36 H 0.07 0.99 7.96 -51.93 -0.41 0.58 16 37 H 0.02 0.36 7.91 -51.93 -0.41 -0.05 16 38 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.05 1.26 7.02 -51.93 -0.36 0.90 16 41 H 0.04 1.09 7.50 -51.93 -0.39 0.70 16 42 H 0.04 0.57 8.08 -51.93 -0.42 0.15 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.05 0.84 8.07 -51.93 -0.42 0.42 16 LS Contribution 363.72 15.07 5.48 5.48 Total: -1.00 -30.97 363.72 -6.87 -37.84 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -6.75 Total: -0.15 kcal Atomic # 6 Polarization: 2.64 SS G_CDS: -0.43 Total: 2.21 kcal Atomic # 7 Polarization: -49.43 SS G_CDS: -0.34 Total: -49.76 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.08 Total: -7.47 kcal Atomic # 9 Polarization: -5.01 SS G_CDS: 0.11 Total: -4.90 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.97 -6.87 -37.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102311431.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.065 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -187.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds