Wall clock time and date at job start Tue Mar 31 2020 16:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47529 * 2 1 4 4 C 1.53003 * 109.47316 * 120.00226 * 2 1 3 5 5 C 1.53007 * 109.46825 * 293.76015 * 4 2 1 6 6 F 1.39904 * 109.47081 * 66.12696 * 5 4 2 7 7 F 1.39903 * 109.46967 * 186.12345 * 5 4 2 8 8 F 1.39897 * 109.47456 * 306.12569 * 5 4 2 9 9 C 1.50700 * 109.47174 * 239.99700 * 2 1 3 10 10 O 1.21279 * 120.00267 * 240.00133 * 9 2 1 11 11 N 1.34781 * 119.99808 * 60.00290 * 9 2 1 12 12 C 1.46492 * 120.00163 * 179.97438 * 11 9 2 13 13 C 1.53002 * 109.47184 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.64308 * 54.29734 * 13 12 11 15 15 C 1.54323 * 110.71903 * 291.15468 * 13 12 11 16 16 N 1.47016 * 107.27186 * 219.26775 * 15 13 12 17 17 C 1.36942 * 125.64947 * 178.98005 * 16 15 13 18 18 H 1.08005 * 120.00002 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00114 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00441 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47198 * 89.99564 * 21 19 17 23 23 H 1.48507 * 109.46768 * 209.99526 * 21 19 17 24 24 H 1.48501 * 109.47017 * 329.99074 * 21 19 17 25 25 C 1.47423 * 108.70458 * 358.94115 * 16 15 13 26 26 C 1.55162 * 110.71767 * 177.44118 * 13 12 11 27 27 H 1.08994 * 111.00596 * 35.96642 * 26 13 12 28 28 C 1.52997 * 111.00410 * 272.11345 * 26 13 12 29 29 H 1.09001 * 109.47135 * 185.99295 * 1 2 3 30 30 H 1.09005 * 109.47094 * 305.99481 * 1 2 3 31 31 H 1.09003 * 109.47142 * 65.98993 * 1 2 3 32 32 H 1.09001 * 109.47371 * 53.75604 * 4 2 1 33 33 H 1.09000 * 109.47567 * 173.76199 * 4 2 1 34 34 H 0.97006 * 119.99751 * 0.02562 * 11 9 2 35 35 H 1.09000 * 109.47340 * 59.99832 * 12 11 9 36 36 H 1.09004 * 109.47153 * 299.99824 * 12 11 9 37 37 H 1.09004 * 109.88313 * 338.68364 * 15 13 12 38 38 H 1.09000 * 109.88247 * 99.84917 * 15 13 12 39 39 H 0.96993 * 120.00428 * 180.02562 * 20 19 17 40 40 H 1.09003 * 110.36481 * 142.96809 * 25 16 15 41 41 H 1.08997 * 110.36534 * 265.29123 * 25 16 15 42 42 H 1.09003 * 109.46856 * 60.00110 * 28 26 13 43 43 H 1.08997 * 109.47052 * 180.02562 * 28 26 13 44 44 H 1.09003 * 109.47369 * 300.00328 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6620 0.0848 2.4936 6 9 0.2707 0.0920 2.6397 7 9 2.2465 -0.4990 3.6227 8 9 2.1232 1.3984 2.3562 9 6 2.0323 -0.7105 -1.2304 10 8 2.7296 -1.6965 -1.1191 11 7 1.7067 -0.2500 -2.4546 12 6 2.1955 -0.9402 -3.6507 13 6 1.6859 -0.2186 -4.8999 14 1 1.9535 0.8375 -4.8697 15 6 0.1593 -0.3912 -5.0456 16 7 -0.1238 -0.5834 -6.4753 17 6 -1.3615 -0.7924 -7.0228 18 1 -2.2342 -0.8271 -6.3875 19 6 -1.4944 -0.9608 -8.3942 20 7 -0.4309 -0.9191 -9.1686 21 14 -3.1829 -1.2451 -9.1411 22 1 -3.7951 0.0613 -9.4926 23 1 -3.0491 -2.0746 -10.3656 24 1 -4.0465 -1.9483 -8.1588 25 6 1.1453 -0.5131 -7.2222 26 6 2.2398 -0.8887 -6.1852 27 1 2.3088 -1.9696 -6.0636 28 6 3.5956 -0.2949 -6.5725 29 1 -0.3633 -1.0221 0.1073 30 1 -0.3633 0.6040 0.8315 31 1 -0.3633 0.4182 -0.9388 32 1 1.5883 -1.7116 1.3069 33 1 3.1243 -0.8190 1.1952 34 1 1.1494 0.5390 -2.5436 35 1 1.8326 -1.9680 -3.6509 36 1 3.2855 -0.9398 -3.6505 37 1 -0.1706 -1.2638 -4.4817 38 1 -0.3508 0.5014 -4.6834 39 1 -0.5238 -1.0363 -10.1269 40 1 1.1414 -1.2282 -8.0449 41 1 1.3092 0.4971 -7.5973 42 1 4.3066 -0.4534 -5.7616 43 1 3.9606 -0.7821 -7.4766 44 1 3.4853 0.7740 -6.7554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001102316016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:31 Heat of formation + Delta-G solvation = -185.798721 kcal Electronic energy + Delta-G solvation = -27881.211667 eV Core-core repulsion = 23418.496407 eV Total energy + Delta-G solvation = -4462.715260 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.45314 -47.93992 -47.90691 -40.12624 -38.10211 -35.26392 -34.78138 -32.98206 -30.79394 -29.94649 -28.81111 -26.12029 -25.44502 -24.78485 -23.23636 -22.29182 -20.45115 -19.88643 -19.34673 -18.88885 -18.78902 -17.85810 -16.94184 -16.59474 -16.00419 -15.72643 -15.16045 -14.99671 -14.79004 -14.54663 -14.37008 -14.15279 -14.08107 -13.99419 -13.80662 -13.70096 -13.32388 -13.09789 -12.74410 -12.67735 -12.43667 -11.97583 -11.93792 -11.76273 -11.62611 -11.58303 -11.44214 -11.18480 -10.91439 -10.82789 -10.29554 -10.07899 -9.99409 -9.92965 -9.76535 -9.40999 -9.05379 -8.68679 -6.87138 -5.68737 -3.10796 2.37896 2.49371 3.03427 3.37459 3.42585 3.44535 3.54037 3.67733 3.74252 4.28894 4.45056 4.47252 4.58610 4.84916 5.06724 5.13629 5.19500 5.24630 5.26580 5.39577 5.46085 5.53261 5.53954 5.71295 5.82168 5.85217 6.01757 6.06277 6.15754 6.21733 6.36746 6.48190 6.55057 6.57310 6.74372 6.90240 7.41313 7.49688 7.59387 7.82957 8.08973 8.32989 9.18660 9.79501 10.44060 11.34947 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.002534 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.356495 B =11046.836487 C =12045.265816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.115 4.115 3 H 0.111 0.889 4 C -0.148 4.148 5 C 0.453 3.547 6 F -0.180 7.180 7 F -0.184 7.184 8 F -0.184 7.184 9 C 0.521 3.479 10 O -0.543 6.543 11 N -0.719 5.719 12 C 0.132 3.868 13 C -0.110 4.110 14 H 0.077 0.923 15 C 0.142 3.858 16 N -0.605 5.605 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.011 4.011 20 N -0.922 5.922 21 Si 0.914 3.086 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.281 1.281 25 C 0.159 3.841 26 C -0.111 4.111 27 H 0.071 0.929 28 C -0.134 4.134 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.117 0.883 33 H 0.119 0.881 34 H 0.403 0.597 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.024 0.976 38 H 0.018 0.982 39 H 0.252 0.748 40 H 0.106 0.894 41 H 0.013 0.987 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.612 3.662 20.011 21.391 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.137 4.137 3 H 0.129 0.871 4 C -0.186 4.186 5 C 0.399 3.601 6 F -0.161 7.161 7 F -0.165 7.165 8 F -0.165 7.165 9 C 0.306 3.694 10 O -0.421 6.421 11 N -0.370 5.370 12 C 0.009 3.991 13 C -0.130 4.130 14 H 0.095 0.905 15 C 0.015 3.985 16 N -0.330 5.330 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.206 4.206 20 N -0.570 5.570 21 Si 0.745 3.255 22 H -0.216 1.216 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.035 3.965 26 C -0.132 4.132 27 H 0.090 0.910 28 C -0.192 4.192 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.090 0.910 32 H 0.136 0.864 33 H 0.137 0.863 34 H 0.237 0.763 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.042 0.958 38 H 0.036 0.964 39 H 0.063 0.937 40 H 0.124 0.876 41 H 0.031 0.969 42 H 0.063 0.937 43 H 0.074 0.926 44 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 6.989 2.923 19.885 21.279 hybrid contribution -1.219 0.504 -0.231 1.339 sum 5.770 3.426 19.654 20.768 Atomic orbital electron populations 1.22133 0.91566 1.04039 1.04166 1.21280 0.98837 1.01356 0.92213 0.87135 1.22711 1.06415 1.00320 0.89200 1.20595 0.74638 0.78742 0.86105 1.93156 1.30365 1.96444 1.96183 1.93197 1.84189 1.84034 1.55104 1.93180 1.88668 1.38810 1.95872 1.20162 0.80233 0.84521 0.84483 1.90718 1.38255 1.26278 1.86851 1.46049 1.53202 1.32088 1.05665 1.21490 0.98751 0.96464 0.82424 1.22505 0.97271 0.99511 0.93690 0.90511 1.21331 0.91539 0.97384 0.88210 1.44477 1.03883 1.84474 1.00199 1.19067 0.83831 1.41546 0.90743 0.90542 1.24788 0.97574 1.02272 0.95994 1.69788 1.26511 1.56861 1.03866 0.86078 0.83077 0.77675 0.78697 1.21633 1.21623 1.20690 1.22071 0.81169 0.99912 0.93382 1.22682 0.95859 0.99192 0.95433 0.91031 1.21645 0.96247 1.00741 1.00572 0.91281 0.90165 0.91040 0.86435 0.86311 0.76276 0.91165 0.91529 0.95831 0.96447 0.93694 0.87605 0.96897 0.93667 0.92635 0.92956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.23 8.41 37.16 0.31 -0.92 16 2 C -0.12 -0.95 2.63 -91.77 -0.24 -1.19 16 3 H 0.11 0.75 7.46 -51.93 -0.39 0.36 16 4 C -0.15 -1.16 4.20 -26.73 -0.11 -1.28 16 5 C 0.45 3.69 3.12 37.16 0.12 3.81 16 6 F -0.18 -1.54 14.38 2.25 0.03 -1.51 16 7 F -0.18 -1.67 17.32 2.25 0.04 -1.63 16 8 F -0.18 -1.59 16.45 2.25 0.04 -1.55 16 9 C 0.52 6.04 7.15 -10.98 -0.08 5.96 16 10 O -0.54 -8.21 15.89 5.56 0.09 -8.12 16 11 N -0.72 -8.21 5.28 -60.30 -0.32 -8.53 16 12 C 0.13 1.81 5.00 -4.05 -0.02 1.79 16 13 C -0.11 -1.73 2.44 -88.78 -0.22 -1.95 16 14 H 0.08 1.13 8.04 -51.93 -0.42 0.72 16 15 C 0.14 2.75 6.64 -3.07 -0.02 2.73 16 16 N -0.60 -15.00 3.40 -169.77 -0.58 -15.57 16 17 C -0.22 -6.11 10.27 -15.06 -0.15 -6.27 16 18 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 19 C -0.01 -0.30 5.49 -17.43 -0.10 -0.39 16 20 N -0.92 -26.44 10.09 55.49 0.56 -25.88 16 21 Si 0.91 21.77 29.55 -169.99 -5.02 16.75 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 25 C 0.16 3.72 5.38 -2.27 -0.01 3.71 16 26 C -0.11 -1.97 3.11 -88.21 -0.27 -2.25 16 27 H 0.07 1.30 8.05 -51.93 -0.42 0.88 16 28 C -0.13 -1.98 9.32 37.16 0.35 -1.64 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.57 5.92 -51.93 -0.31 0.26 16 31 H 0.07 0.52 7.40 -51.93 -0.38 0.14 16 32 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.12 0.93 7.91 -51.93 -0.41 0.52 16 34 H 0.40 3.84 7.76 -40.82 -0.32 3.52 16 35 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 36 H 0.07 0.90 8.12 -51.93 -0.42 0.48 16 37 H 0.02 0.47 7.73 -51.93 -0.40 0.07 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 40 H 0.11 2.82 5.87 -51.93 -0.30 2.52 16 41 H 0.01 0.32 8.00 -51.93 -0.42 -0.09 16 42 H 0.04 0.58 8.12 -51.93 -0.42 0.15 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.76 8.08 -51.93 -0.42 0.34 16 LS Contribution 362.02 15.07 5.46 5.46 Total: -1.00 -31.05 362.02 -6.84 -37.89 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -6.68 Total: 0.59 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -0.45 Total: 2.11 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: -0.34 Total: -49.98 kcal Atomic # 8 Polarization: -8.21 SS G_CDS: 0.09 Total: -8.12 kcal Atomic # 9 Polarization: -4.80 SS G_CDS: 0.11 Total: -4.69 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -5.02 Total: 16.75 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -31.05 -6.84 -37.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102316016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.911 kcal (2) G-P(sol) polarization free energy of solvation -31.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds