Wall clock time and date at job start Tue Mar 31 2020 16:27:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47529 * 2 1 4 4 C 1.53003 * 109.47316 * 120.00226 * 2 1 3 5 5 C 1.53007 * 109.46825 * 293.76015 * 4 2 1 6 6 F 1.39904 * 109.47081 * 66.12696 * 5 4 2 7 7 F 1.39903 * 109.46967 * 186.12345 * 5 4 2 8 8 F 1.39897 * 109.47456 * 306.12569 * 5 4 2 9 9 C 1.50700 * 109.47174 * 239.99700 * 2 1 3 10 10 O 1.21279 * 120.00267 * 240.00133 * 9 2 1 11 11 N 1.34781 * 119.99808 * 60.00290 * 9 2 1 12 12 C 1.46492 * 120.00163 * 179.97438 * 11 9 2 13 13 C 1.53002 * 109.47184 * 180.02562 * 12 11 9 14 14 H 1.08997 * 110.64308 * 54.29734 * 13 12 11 15 15 C 1.54323 * 110.71903 * 291.15468 * 13 12 11 16 16 N 1.47016 * 107.27186 * 219.26775 * 15 13 12 17 17 C 1.36942 * 125.64947 * 178.98005 * 16 15 13 18 18 H 1.08005 * 120.00002 * 359.97438 * 17 16 15 19 19 C 1.38806 * 120.00114 * 180.02562 * 17 16 15 20 20 N 1.31620 * 120.00441 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99877 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47198 * 89.99564 * 21 19 17 23 23 H 1.48507 * 109.46768 * 209.99526 * 21 19 17 24 24 H 1.48501 * 109.47017 * 329.99074 * 21 19 17 25 25 C 1.47423 * 108.70458 * 358.94115 * 16 15 13 26 26 C 1.55162 * 110.71767 * 177.44118 * 13 12 11 27 27 H 1.08994 * 111.00596 * 35.96642 * 26 13 12 28 28 C 1.52997 * 111.00410 * 272.11345 * 26 13 12 29 29 H 1.09001 * 109.47135 * 185.99295 * 1 2 3 30 30 H 1.09005 * 109.47094 * 305.99481 * 1 2 3 31 31 H 1.09003 * 109.47142 * 65.98993 * 1 2 3 32 32 H 1.09001 * 109.47371 * 53.75604 * 4 2 1 33 33 H 1.09000 * 109.47567 * 173.76199 * 4 2 1 34 34 H 0.97006 * 119.99751 * 0.02562 * 11 9 2 35 35 H 1.09000 * 109.47340 * 59.99832 * 12 11 9 36 36 H 1.09004 * 109.47153 * 299.99824 * 12 11 9 37 37 H 1.09004 * 109.88313 * 338.68364 * 15 13 12 38 38 H 1.09000 * 109.88247 * 99.84917 * 15 13 12 39 39 H 0.96993 * 120.00428 * 180.02562 * 20 19 17 40 40 H 1.09003 * 110.36481 * 142.96809 * 25 16 15 41 41 H 1.08997 * 110.36534 * 265.29123 * 25 16 15 42 42 H 1.09003 * 109.46856 * 60.00110 * 28 26 13 43 43 H 1.08997 * 109.47052 * 180.02562 * 28 26 13 44 44 H 1.09003 * 109.47369 * 300.00328 * 28 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6620 0.0848 2.4936 6 9 0.2707 0.0920 2.6397 7 9 2.2465 -0.4990 3.6227 8 9 2.1232 1.3984 2.3562 9 6 2.0323 -0.7105 -1.2304 10 8 2.7296 -1.6965 -1.1191 11 7 1.7067 -0.2500 -2.4546 12 6 2.1955 -0.9402 -3.6507 13 6 1.6859 -0.2186 -4.8999 14 1 1.9535 0.8375 -4.8697 15 6 0.1593 -0.3912 -5.0456 16 7 -0.1238 -0.5834 -6.4753 17 6 -1.3615 -0.7924 -7.0228 18 1 -2.2342 -0.8271 -6.3875 19 6 -1.4944 -0.9608 -8.3942 20 7 -0.4309 -0.9191 -9.1686 21 14 -3.1829 -1.2451 -9.1411 22 1 -3.7951 0.0613 -9.4926 23 1 -3.0491 -2.0746 -10.3656 24 1 -4.0465 -1.9483 -8.1588 25 6 1.1453 -0.5131 -7.2222 26 6 2.2398 -0.8887 -6.1852 27 1 2.3088 -1.9696 -6.0636 28 6 3.5956 -0.2949 -6.5725 29 1 -0.3633 -1.0221 0.1073 30 1 -0.3633 0.6040 0.8315 31 1 -0.3633 0.4182 -0.9388 32 1 1.5883 -1.7116 1.3069 33 1 3.1243 -0.8190 1.1952 34 1 1.1494 0.5390 -2.5436 35 1 1.8326 -1.9680 -3.6509 36 1 3.2855 -0.9398 -3.6505 37 1 -0.1706 -1.2638 -4.4817 38 1 -0.3508 0.5014 -4.6834 39 1 -0.5238 -1.0363 -10.1269 40 1 1.1414 -1.2282 -8.0449 41 1 1.3092 0.4971 -7.5973 42 1 4.3066 -0.4534 -5.7616 43 1 3.9606 -0.7821 -7.4766 44 1 3.4853 0.7740 -6.7554 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102316016.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:30 Heat of formation + Delta-G solvation = -204.530263 kcal Electronic energy + Delta-G solvation = -27882.023928 eV Core-core repulsion = 23418.496407 eV Total energy + Delta-G solvation = -4463.527521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.11469 -48.61068 -48.56683 -41.10138 -39.59419 -36.18151 -35.91388 -34.64547 -32.54769 -31.05702 -29.77686 -27.85283 -26.74567 -25.73289 -24.54733 -23.32034 -21.62343 -21.36654 -20.55933 -19.60353 -19.51832 -18.84727 -18.52365 -17.63856 -17.07665 -16.76153 -16.56678 -16.02828 -15.70935 -15.55931 -15.46753 -15.11711 -15.00564 -14.85687 -14.71089 -14.68811 -14.59951 -14.25879 -13.98504 -13.83146 -13.51012 -13.37962 -13.08681 -12.99143 -12.74642 -12.68795 -12.64984 -12.47015 -12.35667 -12.23087 -11.96440 -11.82476 -11.59516 -11.39548 -11.22766 -10.78238 -10.71761 -10.08222 -8.86571 -7.76512 -5.20751 1.46764 1.48109 1.56787 1.57592 1.70591 2.18571 2.49760 2.87936 2.99723 3.10553 3.32806 3.57154 3.64985 3.78273 3.84062 3.90481 3.93508 3.99455 4.21695 4.40062 4.51582 4.51895 4.64521 4.65239 4.76482 4.79992 4.83324 4.88118 4.93291 4.99473 5.11378 5.18094 5.26345 5.37025 5.41441 5.44505 5.52173 5.73591 5.85962 6.33157 6.51635 7.12311 7.19027 7.80495 8.43737 9.24895 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020192 B = 0.002534 C = 0.002324 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.356495 B =11046.836487 C =12045.265816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.107 4.107 3 H 0.132 0.868 4 C -0.145 4.145 5 C 0.459 3.541 6 F -0.182 7.182 7 F -0.189 7.189 8 F -0.185 7.185 9 C 0.522 3.478 10 O -0.579 6.579 11 N -0.714 5.714 12 C 0.144 3.856 13 C -0.090 4.090 14 H 0.096 0.904 15 C 0.138 3.862 16 N -0.629 5.629 17 C -0.238 4.238 18 H 0.080 0.920 19 C -0.068 4.068 20 N -0.948 5.948 21 Si 0.978 3.022 22 H -0.286 1.286 23 H -0.295 1.295 24 H -0.270 1.270 25 C 0.162 3.838 26 C -0.101 4.101 27 H 0.065 0.935 28 C -0.127 4.127 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.120 0.880 34 H 0.414 0.586 35 H 0.052 0.948 36 H 0.077 0.923 37 H 0.021 0.979 38 H 0.030 0.970 39 H 0.246 0.754 40 H 0.067 0.933 41 H -0.010 1.010 42 H 0.074 0.926 43 H 0.052 0.948 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.796 4.524 21.742 23.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.128 4.128 3 H 0.150 0.850 4 C -0.184 4.184 5 C 0.405 3.595 6 F -0.163 7.163 7 F -0.171 7.171 8 F -0.166 7.166 9 C 0.309 3.691 10 O -0.459 6.459 11 N -0.365 5.365 12 C 0.020 3.980 13 C -0.109 4.109 14 H 0.114 0.886 15 C 0.013 3.987 16 N -0.355 5.355 17 C -0.367 4.367 18 H 0.098 0.902 19 C -0.260 4.260 20 N -0.598 5.598 21 Si 0.806 3.194 22 H -0.213 1.213 23 H -0.221 1.221 24 H -0.195 1.195 25 C 0.037 3.963 26 C -0.121 4.121 27 H 0.083 0.917 28 C -0.185 4.185 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.251 0.749 35 H 0.070 0.930 36 H 0.095 0.905 37 H 0.039 0.961 38 H 0.048 0.952 39 H 0.056 0.944 40 H 0.085 0.915 41 H 0.008 0.992 42 H 0.093 0.907 43 H 0.071 0.929 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.162 3.810 21.656 23.126 hybrid contribution -1.294 0.236 -0.736 1.507 sum 5.868 4.046 20.920 22.101 Atomic orbital electron populations 1.22143 0.90962 1.03887 1.04802 1.21260 0.99132 1.01915 0.90458 0.85050 1.22684 1.06537 1.00271 0.88879 1.20546 0.74439 0.78580 0.85920 1.93155 1.30528 1.96444 1.96188 1.93188 1.84294 1.84145 1.55450 1.93179 1.88681 1.38933 1.95856 1.20665 0.79354 0.83973 0.85120 1.90709 1.39929 1.27953 1.87347 1.45940 1.53222 1.32261 1.05071 1.21192 0.99135 0.95316 0.82329 1.22337 0.94309 1.00604 0.93639 0.88627 1.21516 0.94369 0.97539 0.85318 1.44804 1.03599 1.84472 1.02621 1.19444 0.85220 1.40803 0.91202 0.90216 1.25613 1.00982 1.02839 0.96589 1.70056 1.28240 1.57997 1.03543 0.85084 0.79241 0.77403 0.77643 1.21338 1.22114 1.19491 1.21841 0.82920 0.97450 0.94119 1.22512 0.95748 0.99259 0.94625 0.91664 1.21597 0.94767 1.00527 1.01592 0.91929 0.89346 0.90543 0.86405 0.86173 0.74936 0.92977 0.90509 0.96104 0.95238 0.94403 0.91521 0.99198 0.90699 0.92855 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.07 8.41 71.98 0.61 -1.46 16 2 C -0.11 -1.48 2.63 -11.54 -0.03 -1.51 16 3 H 0.13 1.33 7.46 -2.39 -0.02 1.31 16 4 C -0.15 -2.01 4.20 30.60 0.13 -1.88 16 5 C 0.46 6.60 3.12 71.98 0.22 6.82 16 6 F -0.18 -2.75 14.38 44.97 0.65 -2.11 16 7 F -0.19 -3.15 17.32 44.97 0.78 -2.37 16 8 F -0.18 -2.78 16.45 44.97 0.74 -2.04 16 9 C 0.52 10.96 7.15 87.66 0.63 11.59 16 10 O -0.58 -16.60 15.89 -3.03 -0.05 -16.65 16 11 N -0.71 -14.45 5.28 -463.07 -2.45 -16.90 16 12 C 0.14 3.64 5.00 86.38 0.43 4.07 16 13 C -0.09 -2.64 2.44 -9.60 -0.02 -2.67 16 14 H 0.10 2.52 8.04 -2.39 -0.02 2.50 16 15 C 0.14 5.20 6.64 86.73 0.58 5.78 16 16 N -0.63 -31.54 3.40 -691.04 -2.35 -33.89 16 17 C -0.24 -13.15 10.27 84.03 0.86 -12.28 16 18 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 19 C -0.07 -3.82 5.49 84.86 0.47 -3.35 16 20 N -0.95 -56.19 10.09 21.65 0.22 -55.97 16 21 Si 0.98 45.32 29.55 68.60 2.03 47.34 16 22 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 23 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 25 C 0.16 7.73 5.38 87.02 0.47 8.20 16 26 C -0.10 -3.51 3.11 -9.23 -0.03 -3.54 16 27 H 0.06 2.35 8.05 -2.39 -0.02 2.33 16 28 C -0.13 -3.51 9.32 71.98 0.67 -2.84 16 29 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.03 5.92 -2.38 -0.01 1.01 16 31 H 0.08 0.91 7.40 -2.39 -0.02 0.90 16 32 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.12 1.67 7.91 -2.39 -0.02 1.65 16 34 H 0.41 6.60 7.76 -92.70 -0.72 5.88 16 35 H 0.05 1.54 8.00 -2.39 -0.02 1.52 16 36 H 0.08 1.85 8.12 -2.39 -0.02 1.83 16 37 H 0.02 0.81 7.73 -2.39 -0.02 0.79 16 38 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 40 H 0.07 3.72 5.87 -2.39 -0.01 3.71 16 41 H -0.01 -0.51 8.00 -2.39 -0.02 -0.53 16 42 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 43 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.05 1.49 8.08 -2.39 -0.02 1.47 16 Total: -1.00 -68.41 362.02 4.84 -63.57 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: 0.30 Total: 12.09 kcal Atomic # 6 Polarization: 1.94 SS G_CDS: 4.98 Total: 6.92 kcal Atomic # 7 Polarization: -102.18 SS G_CDS: -4.57 Total: -106.75 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.05 Total: -16.65 kcal Atomic # 9 Polarization: -8.68 SS G_CDS: 2.16 Total: -6.51 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.41 4.84 -63.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102316016.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.964 kcal (2) G-P(sol) polarization free energy of solvation -68.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -204.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds