Wall clock time and date at job start Tue Mar 31 2020 16:24:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 110.88846 * 2 1 4 4 C 1.54914 * 111.00145 * 236.12048 * 2 1 3 5 5 N 1.47427 * 104.83009 * 204.87596 * 4 2 1 6 6 C 1.36937 * 125.64606 * 204.09355 * 5 4 2 7 7 H 1.07996 * 119.99824 * 161.25175 * 6 5 4 8 8 C 1.38815 * 120.00005 * 341.52650 * 6 5 4 9 9 N 1.31621 * 119.99800 * 157.60437 * 8 6 5 10 10 Si 1.86793 * 119.99989 * 337.60833 * 8 6 5 11 11 H 1.48500 * 109.47155 * 84.53528 * 10 8 6 12 12 H 1.48506 * 109.47019 * 204.53442 * 10 8 6 13 13 H 1.48497 * 109.47321 * 324.53143 * 10 8 6 14 14 C 1.47015 * 108.70568 * 24.35900 * 5 4 2 15 15 C 1.54337 * 107.26507 * 358.58089 * 14 5 4 16 16 H 1.09011 * 110.66528 * 96.51929 * 15 14 5 17 17 C 1.52997 * 110.85505 * 219.67210 * 15 14 5 18 18 C 1.52996 * 109.47155 * 288.69720 * 17 15 14 19 19 N 1.46500 * 109.47305 * 179.97438 * 18 17 15 20 20 C 1.34776 * 120.00319 * 179.97438 * 19 18 17 21 21 O 1.21285 * 119.99965 * 0.02562 * 20 19 18 22 22 C 1.50694 * 120.00274 * 179.97438 * 20 19 18 23 23 C 1.53001 * 109.47317 * 180.02562 * 22 20 19 24 24 C 1.53001 * 109.47220 * 179.97438 * 23 22 20 25 25 F 1.39903 * 109.46881 * 60.00155 * 24 23 22 26 26 F 1.39903 * 109.47211 * 179.97438 * 24 23 22 27 27 F 1.39898 * 109.47329 * 300.00677 * 24 23 22 28 28 H 1.08995 * 109.47287 * 182.42421 * 1 2 3 29 29 H 1.08999 * 109.47052 * 302.42509 * 1 2 3 30 30 H 1.08997 * 109.46887 * 62.42304 * 1 2 3 31 31 H 1.08999 * 110.36273 * 86.04306 * 4 2 1 32 32 H 1.08995 * 110.36841 * 323.71790 * 4 2 1 33 33 H 0.97000 * 119.99891 * 179.97438 * 9 8 6 34 34 H 1.08994 * 109.88666 * 118.12600 * 14 5 4 35 35 H 1.08996 * 109.88479 * 239.29494 * 14 5 4 36 36 H 1.08997 * 109.46870 * 48.69030 * 17 15 14 37 37 H 1.09003 * 109.47543 * 168.69396 * 17 15 14 38 38 H 1.09009 * 109.47014 * 299.99593 * 18 17 15 39 39 H 1.08997 * 109.47571 * 59.99287 * 18 17 15 40 40 H 0.96996 * 119.99691 * 0.02562 * 19 18 17 41 41 H 1.09002 * 109.47540 * 300.00759 * 22 20 19 42 42 H 1.09003 * 109.47054 * 60.00663 * 22 20 19 43 43 H 1.08997 * 109.46904 * 300.00149 * 23 22 20 44 44 H 1.09003 * 109.46865 * 60.00120 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0852 -0.8062 -1.2007 5 7 3.4275 -1.2420 -0.7743 6 6 4.4642 -1.5649 -1.6086 7 1 5.4763 -1.5784 -1.2320 8 6 4.2148 -1.8694 -2.9398 9 7 5.1736 -1.7483 -3.8333 10 14 2.5185 -2.4508 -3.4630 11 1 1.6452 -1.2746 -3.7061 12 1 2.6318 -3.2494 -4.7099 13 1 1.9301 -3.2907 -2.3890 14 6 3.4667 -1.2786 0.6949 15 6 2.0871 -0.8078 1.2018 16 1 1.4464 -1.6617 1.4226 17 6 2.2358 0.0875 2.4335 18 6 2.6669 -0.7607 3.6316 19 7 2.8099 0.0967 4.8109 20 6 3.1837 -0.4369 5.9907 21 8 3.4021 -1.6269 6.0761 22 6 3.3314 0.4451 7.2036 23 6 3.7624 -0.4032 8.4017 24 6 3.9129 0.4925 9.6330 25 9 2.6887 1.1085 9.9140 26 9 4.3064 -0.2833 10.7287 27 9 4.8806 1.4712 9.3823 28 1 -0.3633 -1.0267 0.0435 29 1 -0.3633 0.5510 0.8674 30 1 -0.3633 0.4757 -0.9109 31 1 2.1553 -0.1713 -2.0839 32 1 1.4522 -1.6702 -1.4027 33 1 4.9995 -1.9614 -4.7635 34 1 3.6616 -2.2954 1.0354 35 1 4.2431 -0.6073 1.0619 36 1 2.9893 0.8508 2.2390 37 1 1.2814 0.5665 2.6521 38 1 1.9134 -1.5241 3.8262 39 1 3.6213 -1.2397 3.4132 40 1 2.6349 1.0482 4.7427 41 1 4.0855 1.2077 7.0087 42 1 2.3774 0.9250 7.4222 43 1 3.0085 -1.1659 8.5968 44 1 4.7164 -0.8828 8.1829 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001102817628.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:46 Heat of formation + Delta-G solvation = -213.685919 kcal Electronic energy + Delta-G solvation = -27001.702034 eV Core-core repulsion = 22537.777494 eV Total energy + Delta-G solvation = -4463.924540 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.07664 -48.58722 -48.54983 -40.85024 -39.94995 -36.57188 -35.05053 -34.74109 -33.08930 -32.52886 -29.32746 -27.91787 -27.35531 -25.55364 -23.73070 -23.15120 -21.85707 -21.56920 -20.72498 -19.53109 -19.47650 -18.93578 -18.57921 -17.45409 -17.10800 -17.00051 -16.85873 -16.57435 -15.80760 -15.47772 -15.39840 -15.24573 -14.99932 -14.88539 -14.76246 -14.70457 -14.66134 -14.50661 -14.38626 -14.12429 -13.70556 -13.37516 -13.30438 -12.97752 -12.89850 -12.75971 -12.69896 -12.47463 -12.35733 -12.27884 -12.10769 -11.73701 -11.45503 -11.32007 -11.25215 -10.91445 -10.79414 -10.07284 -9.05477 -8.20750 -5.46597 1.26771 1.35721 1.44821 1.61632 1.71420 2.20935 2.38623 2.89258 3.02106 3.05049 3.11315 3.34959 3.62212 3.68511 3.83701 3.90737 4.00669 4.02115 4.24417 4.32948 4.38981 4.47509 4.58086 4.60324 4.68827 4.71213 4.77741 4.80787 4.84003 4.93537 5.03829 5.07973 5.15549 5.22762 5.33774 5.42281 5.47364 5.58261 5.67880 6.08097 6.56283 6.76182 7.25815 7.52949 8.10374 8.99462 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.027395 B = 0.002042 C = 0.001966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1021.846803 B =13707.632128 C =14238.539642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.087 4.087 3 H 0.088 0.912 4 C 0.105 3.895 5 N -0.631 5.631 6 C -0.236 4.236 7 H 0.056 0.944 8 C -0.039 4.039 9 N -0.957 5.957 10 Si 0.948 3.052 11 H -0.266 1.266 12 H -0.307 1.307 13 H -0.273 1.273 14 C 0.131 3.869 15 C -0.081 4.081 16 H 0.085 0.915 17 C -0.101 4.101 18 C 0.121 3.879 19 N -0.714 5.714 20 C 0.513 3.487 21 O -0.587 6.587 22 C -0.138 4.138 23 C -0.148 4.148 24 C 0.458 3.542 25 F -0.185 7.185 26 F -0.192 7.192 27 F -0.187 7.187 28 H 0.052 0.948 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.019 0.981 33 H 0.263 0.737 34 H 0.017 0.983 35 H 0.033 0.967 36 H 0.076 0.924 37 H 0.104 0.896 38 H 0.064 0.936 39 H 0.046 0.954 40 H 0.420 0.580 41 H 0.127 0.873 42 H 0.132 0.868 43 H 0.118 0.882 44 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.170 10.120 27.236 31.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.107 4.107 3 H 0.106 0.894 4 C -0.020 4.020 5 N -0.358 5.358 6 C -0.365 4.365 7 H 0.074 0.926 8 C -0.234 4.234 9 N -0.604 5.604 10 Si 0.777 3.223 11 H -0.192 1.192 12 H -0.236 1.236 13 H -0.198 1.198 14 C 0.007 3.993 15 C -0.100 4.100 16 H 0.103 0.897 17 C -0.139 4.139 18 C -0.003 4.003 19 N -0.367 5.367 20 C 0.300 3.700 21 O -0.467 6.467 22 C -0.178 4.178 23 C -0.187 4.187 24 C 0.404 3.596 25 F -0.167 7.167 26 F -0.173 7.173 27 F -0.168 7.168 28 H 0.071 0.929 29 H 0.107 0.893 30 H 0.074 0.926 31 H 0.053 0.947 32 H 0.037 0.963 33 H 0.071 0.929 34 H 0.035 0.965 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.122 0.878 38 H 0.082 0.918 39 H 0.065 0.935 40 H 0.257 0.743 41 H 0.145 0.855 42 H 0.150 0.850 43 H 0.136 0.864 44 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.893 9.271 27.123 30.664 hybrid contribution 0.074 -0.349 -0.832 0.905 sum -10.819 8.922 26.291 29.797 Atomic orbital electron populations 1.21706 0.92235 1.02291 1.03031 1.22322 0.96904 0.98729 0.92725 0.89415 1.22173 0.85962 0.95851 0.97977 1.44951 1.10015 1.78277 1.02510 1.18608 0.86941 1.39959 0.91001 0.92621 1.25660 1.00805 1.01137 0.95771 1.69972 1.35448 1.52996 1.01980 0.85915 0.81334 0.78976 0.76089 1.19202 1.23589 1.19828 1.21662 0.97188 0.97721 0.82743 1.22123 0.94843 0.98579 0.94466 0.89697 1.21645 1.03787 0.97410 0.91067 1.21300 1.00891 0.93640 0.84515 1.45877 1.69066 1.13106 1.08604 1.20845 0.75643 0.88306 0.85199 1.90746 1.51934 1.18207 1.85847 1.21636 1.07270 0.98495 0.90370 1.22575 1.08175 0.97954 0.89984 1.20615 0.73403 0.79788 0.85777 1.93187 1.44373 1.84414 1.94698 1.93187 1.91078 1.75009 1.58046 1.93189 1.64392 1.65133 1.94121 0.92887 0.89304 0.92562 0.94725 0.96301 0.92855 0.96461 0.94936 0.90512 0.87779 0.91798 0.93535 0.74277 0.85479 0.84954 0.86393 0.86812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.79 9.30 71.98 0.67 -2.13 16 2 C -0.09 -2.45 3.09 -9.40 -0.03 -2.48 16 3 H 0.09 2.34 8.05 -2.38 -0.02 2.32 16 4 C 0.10 4.36 4.16 86.86 0.36 4.72 16 5 N -0.63 -30.71 3.21 -691.98 -2.22 -32.92 16 6 C -0.24 -14.01 10.57 84.03 0.89 -13.13 16 7 H 0.06 3.59 8.06 -2.91 -0.02 3.56 16 8 C -0.04 -2.38 5.43 84.86 0.46 -1.92 16 9 N -0.96 -61.69 13.97 21.65 0.30 -61.38 16 10 Si 0.95 48.01 24.27 68.60 1.66 49.67 16 11 H -0.27 -12.53 6.49 99.48 0.65 -11.88 16 12 H -0.31 -15.66 7.11 99.48 0.71 -14.95 16 13 H -0.27 -13.43 6.66 99.48 0.66 -12.77 16 14 C 0.13 4.99 6.25 86.73 0.54 5.53 16 15 C -0.08 -2.11 2.39 -9.60 -0.02 -2.13 16 16 H 0.08 2.13 8.01 -2.38 -0.02 2.11 16 17 C -0.10 -1.71 4.73 30.59 0.14 -1.57 16 18 C 0.12 2.28 5.56 86.38 0.48 2.76 16 19 N -0.71 -9.56 5.56 -463.06 -2.57 -12.13 16 20 C 0.51 8.42 7.83 87.66 0.69 9.10 16 21 O -0.59 -15.49 15.98 -3.04 -0.05 -15.54 16 22 C -0.14 -1.13 5.46 29.85 0.16 -0.97 16 23 C -0.15 -1.57 4.55 30.60 0.14 -1.43 16 24 C 0.46 5.46 3.16 71.98 0.23 5.68 16 25 F -0.19 -2.28 16.80 44.97 0.76 -1.53 16 26 F -0.19 -2.91 17.32 44.97 0.78 -2.13 16 27 F -0.19 -2.46 16.80 44.97 0.76 -1.71 16 28 H 0.05 1.13 8.11 -2.39 -0.02 1.11 16 29 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.03 1.57 6.64 -2.39 -0.02 1.56 16 32 H 0.02 0.83 5.47 -2.39 -0.01 0.81 16 33 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 34 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.03 1.23 7.69 -2.39 -0.02 1.21 16 36 H 0.08 1.31 7.94 -2.39 -0.02 1.29 16 37 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.05 1.15 7.68 -2.39 -0.02 1.14 16 40 H 0.42 2.56 8.47 -92.71 -0.79 1.78 16 41 H 0.13 0.61 7.80 -2.39 -0.02 0.59 16 42 H 0.13 0.46 7.80 -2.39 -0.02 0.44 16 43 H 0.12 1.28 8.10 -2.39 -0.02 1.26 16 44 H 0.11 1.35 8.10 -2.39 -0.02 1.33 16 Total: -1.00 -78.27 363.55 4.25 -74.02 By element: Atomic # 1 Polarization: 1.47 SS G_CDS: 0.12 Total: 1.59 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: 4.71 Total: 2.05 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.49 Total: -106.44 kcal Atomic # 8 Polarization: -15.49 SS G_CDS: -0.05 Total: -15.54 kcal Atomic # 9 Polarization: -7.65 SS G_CDS: 2.29 Total: -5.36 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.66 Total: 49.67 kcal Total: -78.27 4.25 -74.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001102817628.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.663 kcal (2) G-P(sol) polarization free energy of solvation -78.270 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds