Wall clock time and date at job start Tue Mar 31 2020 16:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46575 * 2 1 4 4 C 1.50697 * 109.46899 * 240.00896 * 2 1 3 5 5 O 1.21281 * 119.99967 * 239.99341 * 4 2 1 6 6 N 1.34780 * 120.00593 * 59.99825 * 4 2 1 7 7 C 1.46497 * 120.00316 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.46857 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47006 * 179.97438 * 8 7 6 10 10 H 1.09005 * 110.63590 * 51.85907 * 9 8 7 11 11 C 1.54337 * 111.00569 * 288.78250 * 9 8 7 12 12 N 1.47015 * 107.26507 * 219.59972 * 11 9 8 13 13 C 1.36937 * 125.64768 * 178.84634 * 12 11 9 14 14 H 1.07996 * 119.99824 * 340.94235 * 13 12 11 15 15 C 1.38807 * 120.00250 * 161.21713 * 13 12 11 16 16 N 1.31620 * 120.00450 * 157.60272 * 15 13 12 17 17 Si 1.86801 * 119.99892 * 337.60961 * 15 13 12 18 18 H 1.48500 * 109.47209 * 84.53337 * 17 15 13 19 19 H 1.48506 * 109.47109 * 204.53340 * 17 15 13 20 20 H 1.48497 * 109.47176 * 324.53007 * 17 15 13 21 21 C 1.47427 * 108.70568 * 358.58089 * 12 11 9 22 22 C 1.54914 * 104.83009 * 24.35900 * 21 12 11 23 23 H 1.09001 * 111.00215 * 81.09771 * 22 21 12 24 24 C 1.52997 * 111.00290 * 204.91203 * 22 21 12 25 25 C 1.52991 * 109.47232 * 120.00553 * 2 1 3 26 26 F 1.39900 * 109.46994 * 180.02562 * 25 2 1 27 27 F 1.39900 * 109.47550 * 300.00001 * 25 2 1 28 28 F 1.39899 * 109.47308 * 60.00284 * 25 2 1 29 29 H 1.09006 * 109.47215 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47519 * 299.99112 * 1 2 3 31 31 H 1.09003 * 109.47823 * 59.99393 * 1 2 3 32 32 H 0.97004 * 119.99395 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.46946 * 59.99649 * 7 6 4 34 34 H 1.09002 * 109.46746 * 299.99680 * 7 6 4 35 35 H 1.08994 * 109.47558 * 60.00110 * 8 7 6 36 36 H 1.09002 * 109.47253 * 299.99457 * 8 7 6 37 37 H 1.08994 * 109.98977 * 100.12069 * 11 9 8 38 38 H 1.08996 * 109.77507 * 338.95612 * 11 9 8 39 39 H 0.97000 * 120.00315 * 179.97438 * 16 15 13 40 40 H 1.08999 * 110.36487 * 143.19046 * 21 12 11 41 41 H 1.08995 * 110.37008 * 265.51818 * 21 12 11 42 42 H 1.09008 * 109.46786 * 58.54351 * 24 22 21 43 43 H 1.08999 * 109.47282 * 178.54453 * 24 22 21 44 44 H 1.08993 * 109.47586 * 298.55004 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0322 -0.7102 -1.2306 5 8 2.7296 -1.6963 -1.1195 6 7 1.7066 -0.2497 -2.4547 7 6 2.1954 -0.9398 -3.6509 8 6 1.6847 -0.2188 -4.9000 9 6 2.1957 -0.9392 -6.1493 10 1 1.9669 -2.0038 -6.0995 11 6 3.7123 -0.7200 -6.3330 12 7 3.9550 -0.5315 -7.7707 13 6 5.1716 -0.2859 -8.3492 14 1 5.9895 0.0855 -7.7496 15 6 5.3521 -0.5088 -9.7073 16 7 6.3176 0.1099 -10.3533 17 14 4.2243 -1.6868 -10.6184 18 1 2.9920 -0.9701 -11.0346 19 1 4.9222 -2.2105 -11.8200 20 1 3.8622 -2.8162 -9.7248 21 6 2.6726 -0.6570 -8.4871 22 6 1.5933 -0.3077 -7.4322 23 1 1.4874 0.7718 -7.3242 24 6 0.2525 -0.9549 -7.7845 25 6 2.0400 -0.7213 1.2491 26 9 3.4390 -0.7208 1.2493 27 9 1.5737 -0.0620 2.3915 28 9 1.5737 -2.0403 1.2490 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.1486 0.5388 -2.5435 33 1 1.8325 -1.9676 -3.6511 34 1 3.2854 -0.9393 -3.6507 35 1 2.0472 0.8091 -4.9000 36 1 0.5947 -0.2198 -4.8999 37 1 4.2608 -1.5914 -5.9756 38 1 4.0256 0.1683 -5.7845 39 1 6.4439 -0.0462 -11.3023 40 1 2.6322 0.0468 -9.3185 41 1 2.5366 -1.6772 -8.8456 42 1 0.3756 -2.0363 -7.8445 43 1 -0.4805 -0.7148 -7.0143 44 1 -0.0930 -0.5748 -8.7459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103325507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:12 Heat of formation + Delta-G solvation = -181.913222 kcal Electronic energy + Delta-G solvation = -27848.521725 eV Core-core repulsion = 23385.974953 eV Total energy + Delta-G solvation = -4462.546772 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -50.36292 -47.88661 -47.75872 -40.22351 -38.57504 -35.57639 -34.60217 -33.29435 -31.40968 -31.11670 -27.56558 -26.90337 -25.93656 -24.76709 -23.35964 -21.97344 -20.85786 -20.40824 -19.55786 -19.00316 -18.72557 -17.96083 -17.02351 -16.86974 -16.03292 -15.84330 -15.27992 -15.07148 -14.84387 -14.68081 -14.37175 -14.22061 -13.99687 -13.94847 -13.89395 -13.68303 -13.46517 -13.20408 -13.06514 -12.96144 -12.81903 -12.54242 -12.38756 -12.00036 -11.85400 -11.61543 -11.48099 -11.36737 -10.97879 -10.89727 -10.55090 -10.28824 -10.16452 -9.93636 -9.78379 -9.42954 -9.36672 -8.66866 -7.02324 -5.93793 -3.23842 2.14243 2.19559 2.70838 3.33480 3.34382 3.48417 3.50928 3.64642 3.76514 4.25938 4.35130 4.48525 4.55490 4.66271 4.86918 4.88340 4.90629 5.01523 5.06227 5.22145 5.36562 5.38936 5.42508 5.48139 5.68486 5.74412 5.81181 5.92566 5.99759 6.05894 6.06897 6.17184 6.24738 6.38525 6.55129 6.65907 6.80279 6.81506 7.04031 7.73613 7.75474 8.32649 8.85269 9.70271 10.19801 11.22547 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.002441 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.273953 B =11469.044337 C =12098.141883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.164 4.164 3 H 0.140 0.860 4 C 0.518 3.482 5 O -0.517 6.517 6 N -0.719 5.719 7 C 0.116 3.884 8 C -0.116 4.116 9 C -0.094 4.094 10 H 0.077 0.923 11 C 0.138 3.862 12 N -0.610 5.610 13 C -0.241 4.241 14 H 0.091 0.909 15 C 0.021 3.979 16 N -0.910 5.910 17 Si 0.883 3.117 18 H -0.285 1.285 19 H -0.303 1.303 20 H -0.277 1.277 21 C 0.116 3.884 22 C -0.100 4.100 23 H 0.079 0.921 24 C -0.140 4.140 25 C 0.473 3.527 26 F -0.172 7.172 27 F -0.182 7.182 28 F -0.172 7.172 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.402 0.598 33 H 0.071 0.929 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.030 0.970 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.057 0.943 41 H 0.025 0.975 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.437 2.205 21.316 27.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.187 4.187 3 H 0.158 0.842 4 C 0.302 3.698 5 O -0.392 6.392 6 N -0.370 5.370 7 C -0.006 4.006 8 C -0.154 4.154 9 C -0.114 4.114 10 H 0.095 0.905 11 C 0.013 3.987 12 N -0.336 5.336 13 C -0.368 4.368 14 H 0.109 0.891 15 C -0.178 4.178 16 N -0.554 5.554 17 Si 0.713 3.287 18 H -0.212 1.212 19 H -0.231 1.231 20 H -0.203 1.203 21 C -0.009 4.009 22 C -0.119 4.119 23 H 0.097 0.903 24 C -0.197 4.197 25 C 0.418 3.582 26 F -0.153 7.153 27 F -0.164 7.164 28 F -0.153 7.153 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.103 0.897 32 H 0.236 0.764 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.048 0.952 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.043 0.957 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.700 1.494 21.221 27.045 hybrid contribution -0.637 -0.376 -0.517 0.902 sum -17.337 1.119 20.704 27.027 Atomic orbital electron populations 1.21852 0.89216 1.04834 1.04898 1.22654 1.01377 1.03169 0.91498 0.84190 1.19716 0.80952 0.84871 0.84296 1.90850 1.36634 1.25368 1.86345 1.45892 1.53552 1.32181 1.05417 1.21577 1.00372 0.96358 0.82309 1.21773 1.00697 1.00098 0.92856 1.22183 0.96706 0.99492 0.93016 0.90465 1.21439 0.92001 0.98259 0.87004 1.44776 1.03138 1.84340 1.01381 1.18648 0.87988 1.37393 0.92777 0.89095 1.24999 0.96988 0.99532 0.96234 1.69843 1.34295 1.42219 1.09014 0.86974 0.79835 0.83113 0.78744 1.21221 1.23092 1.20265 1.22009 0.85631 0.98359 0.94944 1.22352 0.94371 0.99845 0.95362 0.90301 1.21712 0.96383 1.00682 1.00966 1.19745 0.76079 0.77896 0.84470 1.93236 1.29118 1.96331 1.96639 1.93184 1.88587 1.80860 1.53747 1.93211 1.88277 1.37158 1.96651 0.90462 0.89849 0.89669 0.76384 0.91080 0.90466 0.90835 0.91327 0.95212 0.94943 0.92737 0.92482 0.95728 0.92770 0.92955 0.92724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 8.85 37.16 0.33 -0.30 16 2 C -0.16 -1.11 2.71 -91.78 -0.25 -1.36 16 3 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 4 C 0.52 5.26 6.92 -10.99 -0.08 5.18 16 5 O -0.52 -7.72 14.83 5.56 0.08 -7.64 16 6 N -0.72 -5.84 5.45 -60.30 -0.33 -6.17 16 7 C 0.12 1.22 5.56 -4.05 -0.02 1.20 16 8 C -0.12 -1.17 4.74 -26.73 -0.13 -1.30 16 9 C -0.09 -1.35 2.38 -88.78 -0.21 -1.56 16 10 H 0.08 1.09 8.01 -51.93 -0.42 0.67 16 11 C 0.14 2.64 6.25 -3.06 -0.02 2.62 16 12 N -0.61 -14.66 3.21 -170.07 -0.55 -15.21 16 13 C -0.24 -6.89 10.57 -15.06 -0.16 -7.05 16 14 H 0.09 2.76 8.06 -52.49 -0.42 2.33 16 15 C 0.02 0.61 5.43 -17.43 -0.09 0.52 16 16 N -0.91 -28.29 13.97 55.49 0.78 -27.51 16 17 Si 0.88 22.77 24.27 -169.99 -4.13 18.64 16 18 H -0.29 -7.02 6.49 56.52 0.37 -6.65 16 19 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 20 H -0.28 -7.06 6.66 56.52 0.38 -6.69 16 21 C 0.12 2.46 4.16 -2.52 -0.01 2.45 16 22 C -0.10 -1.54 3.09 -88.47 -0.27 -1.82 16 23 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 24 C -0.14 -1.75 9.29 37.16 0.35 -1.40 16 25 C 0.47 4.55 2.42 37.15 0.09 4.64 16 26 F -0.17 -2.07 16.40 2.25 0.04 -2.03 16 27 F -0.18 -1.56 16.80 2.25 0.04 -1.52 16 28 F -0.17 -1.97 15.88 2.25 0.04 -1.94 16 29 H 0.08 0.41 7.80 -51.93 -0.41 0.00 16 30 H 0.08 0.26 7.80 -51.92 -0.41 -0.15 16 31 H 0.08 0.18 7.56 -51.93 -0.39 -0.21 16 32 H 0.40 1.91 7.89 -40.82 -0.32 1.59 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.08 0.98 7.69 -51.93 -0.40 0.58 16 35 H 0.07 0.74 7.95 -51.93 -0.41 0.33 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.61 7.70 -51.93 -0.40 0.21 16 39 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 40 H 0.06 1.31 6.64 -51.93 -0.34 0.97 16 41 H 0.03 0.56 5.47 -51.93 -0.28 0.27 16 42 H 0.05 0.69 8.11 -51.92 -0.42 0.27 16 43 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 359.33 15.07 5.42 5.42 Total: -1.00 -34.93 359.33 -5.87 -40.80 By element: Atomic # 1 Polarization: 2.11 SS G_CDS: -6.78 Total: -4.67 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: -0.48 Total: 1.82 kcal Atomic # 7 Polarization: -48.79 SS G_CDS: -0.10 Total: -48.89 kcal Atomic # 8 Polarization: -7.72 SS G_CDS: 0.08 Total: -7.64 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.11 Total: -5.49 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.13 Total: 18.64 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -34.93 -5.87 -40.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103325507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.109 kcal (2) G-P(sol) polarization free energy of solvation -34.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds