Wall clock time and date at job start Tue Mar 31 2020 16:25:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 109.46575 * 2 1 4 4 C 1.50697 * 109.46899 * 240.00896 * 2 1 3 5 5 O 1.21281 * 119.99967 * 239.99341 * 4 2 1 6 6 N 1.34780 * 120.00593 * 59.99825 * 4 2 1 7 7 C 1.46497 * 120.00316 * 179.97438 * 6 4 2 8 8 C 1.52996 * 109.46857 * 179.97438 * 7 6 4 9 9 C 1.53001 * 109.47006 * 179.97438 * 8 7 6 10 10 H 1.09005 * 110.63590 * 51.85907 * 9 8 7 11 11 C 1.54337 * 111.00569 * 288.78250 * 9 8 7 12 12 N 1.47015 * 107.26507 * 219.59972 * 11 9 8 13 13 C 1.36937 * 125.64768 * 178.84634 * 12 11 9 14 14 H 1.07996 * 119.99824 * 340.94235 * 13 12 11 15 15 C 1.38807 * 120.00250 * 161.21713 * 13 12 11 16 16 N 1.31620 * 120.00450 * 157.60272 * 15 13 12 17 17 Si 1.86801 * 119.99892 * 337.60961 * 15 13 12 18 18 H 1.48500 * 109.47209 * 84.53337 * 17 15 13 19 19 H 1.48506 * 109.47109 * 204.53340 * 17 15 13 20 20 H 1.48497 * 109.47176 * 324.53007 * 17 15 13 21 21 C 1.47427 * 108.70568 * 358.58089 * 12 11 9 22 22 C 1.54914 * 104.83009 * 24.35900 * 21 12 11 23 23 H 1.09001 * 111.00215 * 81.09771 * 22 21 12 24 24 C 1.52997 * 111.00290 * 204.91203 * 22 21 12 25 25 C 1.52991 * 109.47232 * 120.00553 * 2 1 3 26 26 F 1.39900 * 109.46994 * 180.02562 * 25 2 1 27 27 F 1.39900 * 109.47550 * 300.00001 * 25 2 1 28 28 F 1.39899 * 109.47308 * 60.00284 * 25 2 1 29 29 H 1.09006 * 109.47215 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47519 * 299.99112 * 1 2 3 31 31 H 1.09003 * 109.47823 * 59.99393 * 1 2 3 32 32 H 0.97004 * 119.99395 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.46946 * 59.99649 * 7 6 4 34 34 H 1.09002 * 109.46746 * 299.99680 * 7 6 4 35 35 H 1.08994 * 109.47558 * 60.00110 * 8 7 6 36 36 H 1.09002 * 109.47253 * 299.99457 * 8 7 6 37 37 H 1.08994 * 109.98977 * 100.12069 * 11 9 8 38 38 H 1.08996 * 109.77507 * 338.95612 * 11 9 8 39 39 H 0.97000 * 120.00315 * 179.97438 * 16 15 13 40 40 H 1.08999 * 110.36487 * 143.19046 * 21 12 11 41 41 H 1.08995 * 110.37008 * 265.51818 * 21 12 11 42 42 H 1.09008 * 109.46786 * 58.54351 * 24 22 21 43 43 H 1.08999 * 109.47282 * 178.54453 * 24 22 21 44 44 H 1.08993 * 109.47586 * 298.55004 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0322 -0.7102 -1.2306 5 8 2.7296 -1.6963 -1.1195 6 7 1.7066 -0.2497 -2.4547 7 6 2.1954 -0.9398 -3.6509 8 6 1.6847 -0.2188 -4.9000 9 6 2.1957 -0.9392 -6.1493 10 1 1.9669 -2.0038 -6.0995 11 6 3.7123 -0.7200 -6.3330 12 7 3.9550 -0.5315 -7.7707 13 6 5.1716 -0.2859 -8.3492 14 1 5.9895 0.0855 -7.7496 15 6 5.3521 -0.5088 -9.7073 16 7 6.3176 0.1099 -10.3533 17 14 4.2243 -1.6868 -10.6184 18 1 2.9920 -0.9701 -11.0346 19 1 4.9222 -2.2105 -11.8200 20 1 3.8622 -2.8162 -9.7248 21 6 2.6726 -0.6570 -8.4871 22 6 1.5933 -0.3077 -7.4322 23 1 1.4874 0.7718 -7.3242 24 6 0.2525 -0.9549 -7.7845 25 6 2.0400 -0.7213 1.2491 26 9 3.4390 -0.7208 1.2493 27 9 1.5737 -0.0620 2.3915 28 9 1.5737 -2.0403 1.2490 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8901 31 1 -0.3635 0.5139 -0.8899 32 1 1.1486 0.5388 -2.5435 33 1 1.8325 -1.9676 -3.6511 34 1 3.2854 -0.9393 -3.6507 35 1 2.0472 0.8091 -4.9000 36 1 0.5947 -0.2198 -4.8999 37 1 4.2608 -1.5914 -5.9756 38 1 4.0256 0.1683 -5.7845 39 1 6.4439 -0.0462 -11.3023 40 1 2.6322 0.0468 -9.3185 41 1 2.5366 -1.6772 -8.8456 42 1 0.3756 -2.0363 -7.8445 43 1 -0.4805 -0.7148 -7.0143 44 1 -0.0930 -0.5748 -8.7459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103325507.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:01 Heat of formation + Delta-G solvation = -206.877338 kcal Electronic energy + Delta-G solvation = -27849.604250 eV Core-core repulsion = 23385.974953 eV Total energy + Delta-G solvation = -4463.629297 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 10.29 seconds Orbital eigenvalues (eV) -51.12307 -48.62448 -48.58511 -41.03372 -39.96310 -36.59709 -35.32534 -34.88327 -33.04715 -32.41226 -28.93030 -27.50751 -27.40465 -25.97113 -24.33011 -23.25566 -21.87643 -21.65805 -20.75937 -19.76665 -19.48530 -18.93775 -18.66444 -17.76480 -17.09176 -16.87612 -16.78705 -16.29946 -15.75918 -15.50810 -15.35562 -15.20862 -15.00837 -14.84411 -14.75529 -14.70655 -14.69468 -14.48147 -14.41328 -13.99904 -13.74786 -13.44210 -13.35874 -13.02890 -12.93278 -12.90108 -12.73813 -12.47021 -12.39444 -12.28064 -12.11002 -11.73510 -11.45041 -11.33367 -11.25817 -10.98196 -10.79497 -10.17309 -9.05220 -8.20738 -5.46544 1.26610 1.35876 1.40634 1.44827 1.52271 2.01378 2.38568 2.66497 3.00711 3.02417 3.10620 3.35198 3.61325 3.66080 3.83011 3.84272 3.91878 4.01834 4.20634 4.31835 4.38857 4.58300 4.60111 4.67032 4.70870 4.72073 4.78124 4.80345 4.94013 5.03074 5.08603 5.12559 5.15638 5.22824 5.34158 5.35826 5.44330 5.58927 5.68151 6.08182 6.39041 6.76492 7.09106 7.53163 8.10441 8.99573 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.025122 B = 0.002441 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.273953 B =11469.044337 C =12098.141883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.152 4.152 3 H 0.175 0.825 4 C 0.514 3.486 5 O -0.573 6.573 6 N -0.700 5.700 7 C 0.120 3.880 8 C -0.100 4.100 9 C -0.081 4.081 10 H 0.084 0.916 11 C 0.130 3.870 12 N -0.631 5.631 13 C -0.236 4.236 14 H 0.056 0.944 15 C -0.039 4.039 16 N -0.958 5.958 17 Si 0.948 3.052 18 H -0.265 1.265 19 H -0.308 1.308 20 H -0.273 1.273 21 C 0.104 3.896 22 C -0.086 4.086 23 H 0.089 0.911 24 C -0.135 4.135 25 C 0.462 3.538 26 F -0.192 7.192 27 F -0.176 7.176 28 F -0.187 7.187 29 H 0.063 0.937 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.423 0.577 33 H 0.065 0.935 34 H 0.047 0.953 35 H 0.079 0.921 36 H 0.108 0.892 37 H 0.016 0.984 38 H 0.033 0.967 39 H 0.263 0.737 40 H 0.035 0.965 41 H 0.019 0.981 42 H 0.051 0.949 43 H 0.090 0.910 44 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.645 2.965 22.320 31.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.174 4.174 3 H 0.192 0.808 4 C 0.299 3.701 5 O -0.452 6.452 6 N -0.353 5.353 7 C -0.003 4.003 8 C -0.138 4.138 9 C -0.101 4.101 10 H 0.102 0.898 11 C 0.006 3.994 12 N -0.357 5.357 13 C -0.365 4.365 14 H 0.073 0.927 15 C -0.233 4.233 16 N -0.605 5.605 17 Si 0.777 3.223 18 H -0.191 1.191 19 H -0.237 1.237 20 H -0.199 1.199 21 C -0.020 4.020 22 C -0.105 4.105 23 H 0.108 0.892 24 C -0.193 4.193 25 C 0.408 3.592 26 F -0.173 7.173 27 F -0.157 7.157 28 F -0.169 7.169 29 H 0.082 0.918 30 H 0.117 0.883 31 H 0.133 0.867 32 H 0.261 0.739 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.034 0.966 38 H 0.052 0.948 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.036 0.964 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -20.983 2.288 22.251 30.669 hybrid contribution 0.752 -0.570 -0.719 1.187 sum -20.230 1.718 21.531 29.594 Atomic orbital electron populations 1.21956 0.86724 1.04725 1.07135 1.22721 1.03134 1.03592 0.87923 0.80818 1.20301 0.80005 0.84242 0.85571 1.90833 1.39217 1.28000 1.87189 1.45664 1.53038 1.32406 1.04174 1.21362 0.98765 0.96636 0.83560 1.21648 1.02801 0.99392 0.89961 1.22123 0.92559 1.00604 0.94774 0.89785 1.21669 0.96006 0.97615 0.84113 1.44942 1.02746 1.84276 1.03735 1.18608 0.89241 1.35981 0.92670 0.92662 1.25651 0.99184 1.01214 0.97269 1.69969 1.37003 1.44155 1.09349 0.85918 0.78551 0.80790 0.77063 1.19084 1.23672 1.19884 1.22184 0.86311 0.97335 0.96216 1.22314 0.94086 1.00932 0.93202 0.89235 1.21712 0.94959 1.00194 1.02421 1.20284 0.75280 0.77681 0.85964 1.93194 1.30907 1.96394 1.96807 1.93191 1.88347 1.80521 1.53669 1.93175 1.88326 1.38569 1.96799 0.91757 0.88333 0.86721 0.73885 0.91633 0.93404 0.90205 0.87393 0.96625 0.94847 0.92851 0.94684 0.96372 0.92998 0.89153 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 8.85 71.98 0.64 -0.03 16 2 C -0.15 -1.64 2.71 -11.55 -0.03 -1.67 16 3 H 0.17 0.69 8.14 -2.38 -0.02 0.67 16 4 C 0.51 9.47 6.92 87.66 0.61 10.08 16 5 O -0.57 -17.14 14.83 -3.03 -0.05 -17.18 16 6 N -0.70 -9.12 5.45 -463.08 -2.52 -11.64 16 7 C 0.12 2.24 5.56 86.38 0.48 2.72 16 8 C -0.10 -1.59 4.74 30.59 0.14 -1.45 16 9 C -0.08 -2.08 2.38 -9.60 -0.02 -2.10 16 10 H 0.08 2.09 8.01 -2.38 -0.02 2.07 16 11 C 0.13 4.94 6.25 86.73 0.54 5.48 16 12 N -0.63 -30.57 3.21 -691.99 -2.22 -32.79 16 13 C -0.24 -14.01 10.57 84.03 0.89 -13.12 16 14 H 0.06 3.57 8.06 -2.91 -0.02 3.54 16 15 C -0.04 -2.35 5.43 84.86 0.46 -1.89 16 16 N -0.96 -61.80 13.97 21.65 0.30 -61.50 16 17 Si 0.95 48.02 24.27 68.60 1.66 49.68 16 18 H -0.27 -12.43 6.49 99.48 0.65 -11.79 16 19 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 20 H -0.27 -13.49 6.66 99.48 0.66 -12.83 16 21 C 0.10 4.29 4.16 86.86 0.36 4.65 16 22 C -0.09 -2.36 3.09 -9.40 -0.03 -2.39 16 23 H 0.09 2.30 8.05 -2.39 -0.02 2.28 16 24 C -0.14 -2.72 9.29 71.98 0.67 -2.05 16 25 C 0.46 8.42 2.42 71.98 0.17 8.60 16 26 F -0.19 -4.61 16.40 44.97 0.74 -3.88 16 27 F -0.18 -2.73 16.80 44.97 0.76 -1.97 16 28 F -0.19 -4.28 15.88 44.97 0.71 -3.56 16 29 H 0.06 0.50 7.80 -2.38 -0.02 0.48 16 30 H 0.10 0.20 7.80 -2.38 -0.02 0.19 16 31 H 0.11 -0.14 7.56 -2.39 -0.02 -0.16 16 32 H 0.42 1.90 7.89 -92.71 -0.73 1.17 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.05 1.19 7.69 -2.39 -0.02 1.17 16 35 H 0.08 1.25 7.95 -2.39 -0.02 1.23 16 36 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.03 1.25 7.70 -2.39 -0.02 1.23 16 39 H 0.26 16.04 8.31 -92.71 -0.77 15.27 16 40 H 0.03 1.58 6.64 -2.39 -0.02 1.56 16 41 H 0.02 0.79 5.47 -2.39 -0.01 0.78 16 42 H 0.05 1.09 8.11 -2.38 -0.02 1.07 16 43 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -82.37 359.33 4.45 -77.92 By element: Atomic # 1 Polarization: -2.09 SS G_CDS: 0.17 Total: -1.92 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: 4.88 Total: 6.84 kcal Atomic # 7 Polarization: -101.49 SS G_CDS: -4.44 Total: -105.93 kcal Atomic # 8 Polarization: -17.14 SS G_CDS: -0.05 Total: -17.18 kcal Atomic # 9 Polarization: -11.62 SS G_CDS: 2.21 Total: -9.41 kcal Atomic # 14 Polarization: 48.02 SS G_CDS: 1.66 Total: 49.68 kcal Total: -82.37 4.45 -77.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103325507.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.956 kcal (2) G-P(sol) polarization free energy of solvation -82.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -211.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.29 seconds