Wall clock time and date at job start Tue Mar 31 2020 16:25:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 109.46977 * 2 1 4 4 C 1.50700 * 109.47151 * 119.99707 * 2 1 3 5 5 O 1.21279 * 119.99595 * 120.00162 * 4 2 1 6 6 N 1.34776 * 119.99911 * 300.00121 * 4 2 1 7 7 C 1.46502 * 119.99595 * 180.02562 * 6 4 2 8 8 C 1.52998 * 109.46927 * 180.02562 * 7 6 4 9 9 C 1.53004 * 109.47329 * 179.97438 * 8 7 6 10 10 H 1.09000 * 110.63496 * 51.85607 * 9 8 7 11 11 C 1.54335 * 111.00070 * 288.78062 * 9 8 7 12 12 N 1.47022 * 107.26195 * 219.59791 * 11 9 8 13 13 C 1.36935 * 125.64427 * 178.84992 * 12 11 9 14 14 H 1.08000 * 120.00518 * 359.44761 * 13 12 11 15 15 C 1.38817 * 119.99990 * 179.71412 * 13 12 11 16 16 N 1.31617 * 119.99869 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99909 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47028 * 60.00888 * 17 15 13 19 19 H 1.48503 * 109.46851 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47412 * 300.00497 * 17 15 13 21 21 C 1.47426 * 108.70625 * 358.58545 * 12 11 9 22 22 C 1.54912 * 104.82994 * 24.35934 * 21 12 11 23 23 H 1.09002 * 111.00798 * 81.09539 * 22 21 12 24 24 C 1.52999 * 111.00381 * 204.91502 * 22 21 12 25 25 C 1.52998 * 109.47252 * 239.99952 * 2 1 3 26 26 F 1.39900 * 109.46747 * 300.00108 * 25 2 1 27 27 F 1.39907 * 109.46992 * 60.00013 * 25 2 1 28 28 F 1.39901 * 109.47275 * 180.02562 * 25 2 1 29 29 H 1.09001 * 109.47494 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47315 * 300.00001 * 1 2 3 31 31 H 1.09000 * 109.47442 * 59.99953 * 1 2 3 32 32 H 0.96996 * 120.00291 * 359.97438 * 6 4 2 33 33 H 1.08996 * 109.47340 * 59.99883 * 7 6 4 34 34 H 1.09001 * 109.46732 * 299.99547 * 7 6 4 35 35 H 1.09009 * 109.47376 * 59.99980 * 8 7 6 36 36 H 1.09003 * 109.47168 * 299.99799 * 8 7 6 37 37 H 1.09007 * 109.99076 * 100.12594 * 11 9 8 38 38 H 1.09002 * 109.78210 * 338.95588 * 11 9 8 39 39 H 0.96996 * 119.99743 * 179.97438 * 16 15 13 40 40 H 1.08998 * 110.36404 * 143.19245 * 21 12 11 41 41 H 1.08995 * 110.36566 * 265.51629 * 21 12 11 42 42 H 1.09005 * 109.46589 * 58.54331 * 24 22 21 43 43 H 1.08990 * 109.47291 * 178.54164 * 24 22 21 44 44 H 1.09000 * 109.47086 * 298.54970 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 8 2.7296 -1.6964 1.1192 6 7 1.7067 -0.2498 2.4546 7 6 2.1955 -0.9401 3.6507 8 6 1.6849 -0.2193 4.8999 9 6 2.1949 -0.9405 6.1493 10 1 3.2750 -1.0780 6.0994 11 6 1.4846 -2.2984 6.3327 12 7 1.2263 -2.4649 7.7704 13 6 0.5908 -3.5312 8.3487 14 1 0.2233 -4.3393 7.7337 15 6 0.4141 -3.5707 9.7250 16 7 0.8568 -2.5831 10.4740 17 14 -0.4534 -5.0249 10.5139 18 1 0.2958 -6.2711 10.2126 19 1 -0.5143 -4.8267 11.9844 20 1 -1.8317 -5.1326 9.9719 21 6 1.7702 -1.2970 8.4869 22 6 1.7990 -0.1628 7.4322 23 1 0.8158 0.2954 7.3242 24 6 2.8545 0.8873 7.7846 25 6 2.0400 -0.7212 -1.2492 26 9 1.5736 -2.0402 -1.2491 27 9 1.5736 -0.0617 -2.3915 28 9 3.4390 -0.7218 -1.2489 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.1493 0.5390 2.5436 33 1 3.2855 -0.9397 3.6506 34 1 1.8325 -1.9679 3.6509 35 1 0.5948 -0.2201 4.8999 36 1 2.0475 0.8087 4.9000 37 1 2.1248 -3.1050 5.9752 38 1 0.5427 -2.2991 5.7842 39 1 0.7330 -2.6106 11.4356 40 1 1.1198 -1.0254 9.3184 41 1 2.7778 -1.5074 8.8454 42 1 3.8337 0.4121 7.8445 43 1 2.8713 1.6583 7.0145 44 1 2.6105 1.3392 8.7460 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103325508.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:25:22 Heat of formation + Delta-G solvation = -184.016777 kcal Electronic energy + Delta-G solvation = -27788.569684 eV Core-core repulsion = 23325.931694 eV Total energy + Delta-G solvation = -4462.637989 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 7.37 seconds Orbital eigenvalues (eV) -50.33798 -47.86525 -47.73231 -40.16602 -38.21185 -35.44635 -34.54520 -33.22861 -31.09576 -30.67503 -27.05327 -26.85406 -25.71834 -24.51353 -23.36379 -22.04507 -20.80762 -19.76407 -19.31391 -18.93285 -18.70174 -17.91052 -16.95195 -16.83526 -16.03750 -15.67300 -15.24772 -14.79536 -14.69915 -14.40850 -14.19853 -14.15404 -13.95681 -13.92603 -13.88323 -13.59418 -13.47565 -13.03109 -12.94816 -12.81821 -12.47893 -12.13718 -12.04934 -11.83304 -11.69834 -11.51200 -11.15526 -11.06218 -10.87102 -10.74613 -10.30955 -10.11834 -9.91606 -9.84373 -9.72632 -9.34754 -9.30410 -8.63705 -6.81248 -5.64058 -3.05522 2.18045 2.23718 2.75824 3.36199 3.41104 3.45294 3.46552 3.67897 3.80708 4.30737 4.38967 4.49939 4.51403 4.83426 4.94455 5.03628 5.07744 5.23044 5.43824 5.46727 5.49281 5.53358 5.62634 5.72215 5.87363 5.92904 6.07446 6.17688 6.22970 6.24772 6.30697 6.53806 6.60284 6.68021 6.81417 7.00172 7.10376 7.55597 7.64459 7.80362 7.87568 8.37990 9.23905 9.84868 10.50140 11.39614 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.021100 B = 0.002400 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1326.718315 B =11662.133687 C =12428.879423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.164 4.164 3 H 0.139 0.861 4 C 0.518 3.482 5 O -0.518 6.518 6 N -0.718 5.718 7 C 0.117 3.883 8 C -0.116 4.116 9 C -0.093 4.093 10 H 0.073 0.927 11 C 0.139 3.861 12 N -0.605 5.605 13 C -0.222 4.222 14 H 0.076 0.924 15 C -0.012 4.012 16 N -0.923 5.923 17 Si 0.914 3.086 18 H -0.285 1.285 19 H -0.290 1.290 20 H -0.285 1.285 21 C 0.158 3.842 22 C -0.114 4.114 23 H 0.068 0.932 24 C -0.133 4.133 25 C 0.473 3.527 26 F -0.171 7.171 27 F -0.182 7.182 28 F -0.173 7.173 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.402 0.598 33 H 0.070 0.930 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.019 0.981 38 H 0.022 0.978 39 H 0.252 0.748 40 H 0.105 0.895 41 H 0.011 0.989 42 H 0.050 0.950 43 H 0.042 0.958 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.347 12.177 -20.742 24.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.186 4.186 3 H 0.157 0.843 4 C 0.301 3.699 5 O -0.393 6.393 6 N -0.370 5.370 7 C -0.006 4.006 8 C -0.154 4.154 9 C -0.112 4.112 10 H 0.091 0.909 11 C 0.013 3.987 12 N -0.331 5.331 13 C -0.350 4.350 14 H 0.094 0.906 15 C -0.207 4.207 16 N -0.572 5.572 17 Si 0.745 3.255 18 H -0.212 1.212 19 H -0.216 1.216 20 H -0.212 1.212 21 C 0.033 3.967 22 C -0.134 4.134 23 H 0.086 0.914 24 C -0.191 4.191 25 C 0.418 3.582 26 F -0.152 7.152 27 F -0.164 7.164 28 F -0.155 7.155 29 H 0.097 0.903 30 H 0.104 0.896 31 H 0.101 0.899 32 H 0.236 0.764 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.037 0.963 38 H 0.040 0.960 39 H 0.063 0.937 40 H 0.122 0.878 41 H 0.029 0.971 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.809 11.329 -20.611 23.534 hybrid contribution -0.522 -0.461 0.230 0.734 sum 0.287 10.868 -20.381 23.100 Atomic orbital electron populations 1.21861 0.89136 1.05003 1.04900 1.22653 1.01466 1.03016 0.91498 0.84315 1.19718 0.81001 0.84857 0.84313 1.90843 1.36848 1.25293 1.86357 1.45920 1.53487 1.32117 1.05446 1.21600 0.99564 0.97046 0.82354 1.21792 1.01385 0.99205 0.93013 1.22153 0.99717 0.96145 0.93229 0.90898 1.21373 0.96074 0.93487 0.87725 1.44493 1.67084 1.21338 1.00190 1.19045 1.28638 0.97008 0.90355 0.90608 1.24780 1.01408 0.98506 0.96029 1.69789 1.51492 1.31480 1.04428 0.86158 0.79358 0.81770 0.78261 1.21218 1.21584 1.21193 1.21970 0.97793 0.83243 0.93650 1.22628 0.97801 0.96693 0.96276 0.91386 1.21635 0.98869 0.98069 1.00525 1.19758 0.75990 0.77974 0.84481 1.93219 1.88254 1.37079 1.96640 1.93185 1.88576 1.80861 1.53773 1.93224 1.29231 1.96354 1.96651 0.90347 0.89597 0.89877 0.76400 0.91137 0.90623 0.91108 0.91500 0.96270 0.96024 0.93732 0.87756 0.97074 0.93071 0.93889 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.85 37.16 0.33 -0.44 16 2 C -0.16 -1.18 2.71 -91.77 -0.25 -1.43 16 3 H 0.14 0.57 8.14 -51.93 -0.42 0.14 16 4 C 0.52 5.55 6.92 -10.99 -0.08 5.47 16 5 O -0.52 -8.01 14.83 5.56 0.08 -7.92 16 6 N -0.72 -6.42 5.45 -60.30 -0.33 -6.75 16 7 C 0.12 1.35 5.56 -4.04 -0.02 1.33 16 8 C -0.12 -1.34 4.74 -26.73 -0.13 -1.47 16 9 C -0.09 -1.49 2.38 -88.77 -0.21 -1.70 16 10 H 0.07 1.16 8.01 -51.93 -0.42 0.74 16 11 C 0.14 2.84 6.25 -3.06 -0.02 2.82 16 12 N -0.61 -15.45 3.39 -170.06 -0.58 -16.03 16 13 C -0.22 -6.22 10.27 -15.06 -0.15 -6.38 16 14 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 15 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 16 N -0.92 -26.86 10.09 55.49 0.56 -26.30 16 17 Si 0.91 22.14 29.55 -169.99 -5.02 17.12 16 18 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 C 0.16 3.77 5.36 -2.53 -0.01 3.75 16 22 C -0.11 -2.02 3.09 -88.47 -0.27 -2.29 16 23 H 0.07 1.20 8.05 -51.93 -0.42 0.78 16 24 C -0.13 -1.95 9.29 37.16 0.35 -1.61 16 25 C 0.47 4.70 2.42 37.16 0.09 4.79 16 26 F -0.17 -2.07 15.88 2.25 0.04 -2.03 16 27 F -0.18 -1.61 16.80 2.25 0.04 -1.57 16 28 F -0.17 -2.07 16.40 2.25 0.04 -2.04 16 29 H 0.08 0.51 7.80 -51.93 -0.41 0.10 16 30 H 0.09 0.28 7.57 -51.93 -0.39 -0.12 16 31 H 0.08 0.32 7.80 -51.93 -0.41 -0.09 16 32 H 0.40 2.25 7.89 -40.82 -0.32 1.93 16 33 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.08 1.03 7.69 -51.93 -0.40 0.63 16 35 H 0.07 0.82 7.95 -51.92 -0.41 0.41 16 36 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.02 0.40 8.14 -51.92 -0.42 -0.02 16 38 H 0.02 0.44 7.70 -51.93 -0.40 0.04 16 39 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 40 H 0.10 2.81 5.87 -51.93 -0.31 2.51 16 41 H 0.01 0.29 8.04 -51.93 -0.42 -0.13 16 42 H 0.05 0.75 8.11 -51.93 -0.42 0.33 16 43 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 364.52 15.07 5.49 5.49 Total: -1.00 -33.31 364.52 -6.96 -40.27 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.80 Total: -2.66 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -0.48 Total: 2.42 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: -0.35 Total: -49.08 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.08 Total: -7.92 kcal Atomic # 9 Polarization: -5.75 SS G_CDS: 0.11 Total: -5.64 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.31 -6.96 -40.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103325508.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.749 kcal (2) G-P(sol) polarization free energy of solvation -33.310 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.957 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.37 seconds