Wall clock time and date at job start Tue Mar 31 2020 16:24:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35360 * 117.00007 * 2 1 4 4 C 1.36096 * 125.57896 * 179.97438 * 3 2 1 5 5 C 1.39908 * 107.18113 * 180.02562 * 4 3 2 6 6 C 1.37829 * 106.67127 * 0.02562 * 5 4 3 7 7 C 1.46138 * 126.02663 * 179.97438 * 6 5 4 8 8 O 1.21768 * 119.99891 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99711 * 180.02562 * 7 6 5 10 10 C 1.46508 * 119.99579 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.46707 * 179.97438 * 10 9 7 12 12 C 1.53004 * 109.47125 * 179.97438 * 11 10 9 13 13 H 1.09000 * 110.63496 * 51.85936 * 12 11 10 14 14 C 1.54335 * 111.00070 * 288.78390 * 12 11 10 15 15 N 1.47022 * 107.26195 * 219.59791 * 14 12 11 16 16 C 1.36935 * 125.64427 * 178.84992 * 15 14 12 17 17 H 1.08000 * 120.00518 * 359.44761 * 16 15 14 18 18 C 1.38817 * 119.99990 * 179.71412 * 16 15 14 19 19 N 1.31617 * 119.99869 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99909 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.46676 * 90.00727 * 20 18 16 22 22 H 1.48502 * 109.46977 * 210.00025 * 20 18 16 23 23 H 1.48494 * 109.47494 * 330.00753 * 20 18 16 24 24 C 1.47426 * 108.70625 * 358.58545 * 15 14 12 25 25 C 1.54912 * 104.82994 * 24.35934 * 24 15 14 26 26 H 1.08995 * 111.00742 * 81.05954 * 25 24 15 27 27 C 1.52998 * 111.00086 * 204.87731 * 25 24 15 28 28 O 1.34013 * 125.58274 * 0.27543 * 3 2 1 29 29 H 1.09005 * 109.47334 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46971 * 299.99812 * 1 2 3 31 31 H 1.09004 * 109.47018 * 59.99367 * 1 2 3 32 32 H 1.08000 * 126.40981 * 359.97438 * 4 3 2 33 33 H 1.08000 * 126.66368 * 180.02562 * 5 4 3 34 34 H 0.96996 * 120.00291 * 0.02562 * 9 7 6 35 35 H 1.09000 * 109.46669 * 60.00382 * 10 9 7 36 36 H 1.08993 * 109.46871 * 299.99995 * 10 9 7 37 37 H 1.09009 * 109.47210 * 60.00549 * 11 10 9 38 38 H 1.09003 * 109.47538 * 300.00244 * 11 10 9 39 39 H 1.09007 * 109.99076 * 100.12594 * 14 12 11 40 40 H 1.09002 * 109.78210 * 338.95588 * 14 12 11 41 41 H 0.96996 * 119.99743 * 179.97438 * 19 18 16 42 42 H 1.08998 * 110.36404 * 143.19245 * 24 15 14 43 43 H 1.08995 * 110.36566 * 265.51629 * 24 15 14 44 44 H 1.08996 * 109.47303 * 58.54471 * 27 25 24 45 45 H 1.09006 * 109.46537 * 178.54319 * 27 25 24 46 46 H 1.08996 * 109.47165 * 298.54472 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4091 0.0005 5 6 3.5986 2.7924 0.0009 6 6 2.3522 3.3809 0.0012 7 6 2.0795 4.8166 0.0022 8 8 3.0020 5.6115 0.0024 9 7 0.8071 5.2608 0.0029 10 6 0.5338 6.7001 0.0045 11 6 -0.9785 6.9320 0.0044 12 6 -1.2641 8.4351 0.0067 13 1 -0.7166 8.9313 -0.7946 14 6 -0.9119 9.0630 1.3719 15 7 -1.9558 10.0514 1.6799 16 6 -2.0230 10.8135 2.8155 17 1 -1.2702 10.7073 3.5826 18 6 -3.0619 11.7188 2.9834 19 7 -3.9826 11.8442 2.0512 20 14 -3.1539 12.7581 4.5329 21 1 -2.4126 14.0275 4.3222 22 1 -4.5745 13.0600 4.8427 23 1 -2.5478 12.0130 5.6654 24 6 -2.9147 10.0906 0.5607 25 6 -2.7868 8.7048 -0.1198 26 1 -3.3629 7.9513 0.4171 27 6 -3.2124 8.7735 -1.5878 28 8 1.4265 2.3957 0.0052 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 4.1528 0.6453 0.0013 33 1 4.5516 3.3005 0.0009 34 1 0.0723 4.6276 0.0032 35 1 0.9706 7.1538 -0.8851 36 1 0.9710 7.1520 0.8948 37 1 -1.4158 6.4782 0.8939 38 1 -1.4154 6.4801 -0.8861 39 1 0.0594 9.5546 1.3165 40 1 -0.8951 8.2899 2.1402 41 1 -4.7087 12.4765 2.1687 42 1 -3.9280 10.2376 0.9345 43 1 -2.6488 10.8829 -0.1390 44 1 -2.5937 9.5020 -2.1117 45 1 -3.0883 7.7933 -2.0482 46 1 -4.2583 9.0740 -1.6492 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103568216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:28 Heat of formation + Delta-G solvation = -42.365799 kcal Electronic energy + Delta-G solvation = -26670.520564 eV Core-core repulsion = 22755.881763 eV Total energy + Delta-G solvation = -3914.638802 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 4.73 seconds Orbital eigenvalues (eV) -43.10186 -39.71980 -38.89552 -38.12694 -35.38916 -33.60654 -33.23108 -31.37256 -30.69064 -29.85980 -27.85678 -26.71064 -25.64402 -24.29818 -22.94384 -22.35804 -21.90834 -20.66074 -19.75563 -19.33982 -19.14695 -17.91292 -17.47464 -16.84555 -16.16108 -15.82535 -15.69589 -15.33239 -14.88348 -14.56471 -14.30283 -13.80896 -13.60544 -13.53839 -13.37155 -13.25200 -12.98363 -12.81727 -12.66215 -12.09895 -12.06566 -12.00236 -11.66900 -11.49713 -11.13161 -11.03323 -10.84625 -10.74687 -10.48349 -10.39196 -10.08962 -9.88981 -9.81842 -9.70818 -9.32296 -9.25436 -8.62391 -8.44298 -6.79313 -5.62562 -3.03852 0.73878 1.80856 2.00579 2.66464 2.99427 3.06360 3.41563 3.46526 3.48339 4.40558 4.50878 4.51448 4.59461 4.61208 4.87184 4.90491 5.08466 5.09019 5.27199 5.27978 5.45481 5.47289 5.53333 5.56009 5.66393 5.75745 5.91893 5.92640 5.96681 6.08154 6.13518 6.22297 6.26923 6.30820 6.35394 6.56674 6.62861 6.67715 6.70877 6.84441 7.03372 7.29082 7.57727 7.66592 7.89373 7.92475 8.39653 9.25552 9.86534 10.51977 11.41197 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.002210 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.977531 B =12668.871653 C =12993.663853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.263 6.263 3 C 0.213 3.787 4 C -0.241 4.241 5 C -0.082 4.082 6 C -0.100 4.100 7 C 0.604 3.396 8 O -0.520 6.520 9 N -0.719 5.719 10 C 0.117 3.883 11 C -0.116 4.116 12 C -0.092 4.092 13 H 0.073 0.927 14 C 0.139 3.861 15 N -0.606 5.606 16 C -0.220 4.220 17 H 0.077 0.923 18 C -0.013 4.013 19 N -0.923 5.923 20 Si 0.914 3.086 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.282 1.282 24 C 0.158 3.842 25 C -0.115 4.115 26 H 0.067 0.933 27 C -0.133 4.133 28 O -0.190 6.190 29 H 0.111 0.889 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.164 0.836 33 H 0.168 0.832 34 H 0.403 0.597 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.020 0.980 40 H 0.022 0.978 41 H 0.251 0.749 42 H 0.105 0.895 43 H 0.011 0.989 44 H 0.050 0.950 45 H 0.042 0.958 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.857 -23.754 -7.923 26.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.176 6.176 3 C 0.116 3.884 4 C -0.260 4.260 5 C -0.103 4.103 6 C -0.150 4.150 7 C 0.391 3.609 8 O -0.398 6.398 9 N -0.369 5.369 10 C -0.006 4.006 11 C -0.155 4.155 12 C -0.112 4.112 13 H 0.091 0.909 14 C 0.013 3.987 15 N -0.331 5.331 16 C -0.349 4.349 17 H 0.094 0.906 18 C -0.208 4.208 19 N -0.572 5.572 20 Si 0.744 3.256 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C 0.034 3.966 25 C -0.134 4.134 26 H 0.086 0.914 27 C -0.191 4.191 28 O -0.090 6.090 29 H 0.129 0.871 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.181 0.819 33 H 0.186 0.814 34 H 0.237 0.763 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.062 0.938 42 H 0.122 0.878 43 H 0.029 0.971 44 H 0.069 0.931 45 H 0.061 0.939 46 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 8.129 -23.113 -7.804 25.713 hybrid contribution -0.567 0.167 0.775 0.975 sum 7.562 -22.946 -7.028 25.161 Atomic orbital electron populations 1.23201 0.76409 1.05116 1.02860 1.86412 1.23310 1.18791 1.89131 1.20808 0.89562 0.78202 0.99822 1.20793 0.92089 0.96952 1.16209 1.22011 0.97918 0.92512 0.97852 1.22021 0.87037 0.87363 1.18582 1.16338 0.83643 0.83788 0.77166 1.90927 1.44254 1.53620 1.51033 1.45982 1.07037 1.09474 1.74398 1.21604 0.97008 0.78858 1.03110 1.21795 0.93454 0.97799 1.02407 1.22150 0.97550 0.92791 0.98703 0.90855 1.21379 0.92470 0.91911 0.92929 1.44508 1.25574 1.44094 1.18972 1.19093 1.07700 1.13714 0.94361 0.90551 1.24783 0.97656 0.99895 0.98486 1.69803 1.15058 1.39046 1.33289 0.86080 0.76829 0.80312 0.82347 1.21649 1.21692 1.20728 1.21969 0.97890 0.89183 0.87608 1.22629 0.93785 1.01441 0.95581 0.91413 1.21633 1.01210 1.00187 0.96052 1.83948 1.37794 1.14291 1.72983 0.87066 0.91613 0.91680 0.81857 0.81410 0.76309 0.91042 0.90549 0.91158 0.91530 0.96201 0.95994 0.93807 0.87766 0.97055 0.93053 0.93897 0.92803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.74 101.05 1.09 1.17 16 2 O -0.26 -2.06 10.55 -41.00 -0.43 -2.49 16 3 C 0.21 1.97 7.86 29.96 0.24 2.21 16 4 C -0.24 -2.11 10.89 -39.73 -0.43 -2.54 16 5 C -0.08 -0.82 10.66 -39.11 -0.42 -1.24 16 6 C -0.10 -1.13 7.15 -36.56 -0.26 -1.39 16 7 C 0.60 7.94 7.77 -13.09 -0.10 7.84 16 8 O -0.52 -8.50 16.87 5.13 0.09 -8.41 16 9 N -0.72 -8.21 5.55 -61.78 -0.34 -8.56 16 10 C 0.12 1.49 5.56 -4.04 -0.02 1.46 16 11 C -0.12 -1.48 4.74 -26.73 -0.13 -1.61 16 12 C -0.09 -1.53 2.38 -88.77 -0.21 -1.74 16 13 H 0.07 1.20 8.02 -51.93 -0.42 0.78 16 14 C 0.14 2.90 6.25 -3.06 -0.02 2.88 16 15 N -0.61 -15.68 3.39 -170.06 -0.58 -16.25 16 16 C -0.22 -6.23 10.27 -15.06 -0.15 -6.38 16 17 H 0.08 2.10 7.83 -52.49 -0.41 1.69 16 18 C -0.01 -0.37 5.49 -17.43 -0.10 -0.47 16 19 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 20 Si 0.91 22.32 29.55 -169.99 -5.02 17.29 16 21 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 C 0.16 3.82 5.36 -2.53 -0.01 3.81 16 25 C -0.11 -2.08 3.09 -88.47 -0.27 -2.36 16 26 H 0.07 1.24 8.05 -51.93 -0.42 0.82 16 27 C -0.13 -2.01 9.30 37.16 0.35 -1.67 16 28 O -0.19 -1.90 9.88 -19.25 -0.19 -2.09 16 29 H 0.11 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 33 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.40 3.69 8.22 -40.82 -0.34 3.35 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.10 7.69 -51.93 -0.40 0.70 16 37 H 0.07 0.91 7.95 -51.92 -0.41 0.49 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 40 H 0.02 0.46 7.70 -51.93 -0.40 0.06 16 41 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.10 2.85 5.87 -51.93 -0.31 2.54 16 43 H 0.01 0.30 8.04 -51.93 -0.42 -0.12 16 44 H 0.05 0.78 8.11 -51.93 -0.42 0.35 16 45 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 381.74 15.07 5.75 5.75 Total: -1.00 -33.07 381.74 -7.93 -41.00 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -7.30 Total: 0.31 kcal Atomic # 6 Polarization: 0.44 SS G_CDS: -0.46 Total: -0.03 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.36 Total: -51.34 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: -0.54 Total: -12.99 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.07 -7.93 -41.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103568216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.364 kcal (2) G-P(sol) polarization free energy of solvation -33.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.002 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.74 seconds