Wall clock time and date at job start Tue Mar 31 2020 16:24:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47364 * 179.97438 * 9 8 6 11 11 F 1.39898 * 109.47156 * 59.99738 * 10 9 8 12 12 F 1.39901 * 109.47604 * 179.97438 * 10 9 8 13 13 F 1.39901 * 109.47069 * 300.00199 * 10 9 8 14 14 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 15 15 C 1.54328 * 107.27043 * 358.94013 * 14 5 4 16 16 H 1.09000 * 110.71672 * 96.34629 * 15 14 5 17 17 C 1.52992 * 110.72106 * 219.44112 * 15 14 5 18 18 C 1.52997 * 109.47482 * 293.55011 * 17 15 14 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46725 * 59.99976 * 24 22 20 26 26 H 1.48498 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46920 * 300.00189 * 24 22 20 28 28 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 29 29 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 30 30 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 31 31 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 32 32 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 33 33 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 34 34 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 35 35 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 36 36 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 37 37 H 1.08996 * 109.87920 * 239.53158 * 14 5 4 38 38 H 1.08996 * 109.88311 * 118.35693 * 14 5 4 39 39 H 1.09002 * 109.47103 * 173.54764 * 17 15 14 40 40 H 1.08998 * 109.46862 * 53.55576 * 17 15 14 41 41 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 42 42 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 43 43 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 44 44 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3805 -1.8175 -5.2988 11 9 5.0518 -0.5071 -5.6620 12 9 6.5695 -2.1925 -5.9336 13 9 4.3511 -2.6813 -5.6878 14 6 3.4675 -1.2741 0.6961 15 6 2.0862 -0.8078 1.2023 16 1 1.4479 -1.6632 1.4239 17 6 2.2349 0.0876 2.4338 18 6 2.7848 -0.7361 3.6000 19 7 2.9278 0.1215 4.7791 20 6 3.4053 -0.4004 5.9516 21 1 3.6768 -1.4443 6.0069 22 6 3.5402 0.4120 7.0689 23 7 3.2088 1.6840 7.0016 24 14 4.1923 -0.2999 8.6682 25 1 5.5586 -0.8388 8.4493 26 1 4.2407 0.7660 9.7010 27 1 3.2965 -1.3925 9.1252 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5731 -0.8530 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1560 -0.1720 -2.0836 32 1 1.4526 -1.6704 -1.4043 33 1 3.4638 -2.1576 -3.3913 34 1 4.0093 -0.4633 -3.3704 35 1 6.3678 -1.2223 -3.4787 36 1 5.8217 -2.9163 -3.4994 37 1 4.2426 -0.5996 1.0600 38 1 3.6651 -2.2893 1.0402 39 1 1.2618 0.4969 2.7051 40 1 2.9222 0.9032 2.2091 41 1 3.7579 -1.1454 3.3287 42 1 2.0974 -1.5517 3.8246 43 1 2.6835 1.0589 4.7294 44 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104032173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:06 Heat of formation + Delta-G solvation = -200.235118 kcal Electronic energy + Delta-G solvation = -27169.865175 eV Core-core repulsion = 22706.523906 eV Total energy + Delta-G solvation = -4463.341269 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 7.78 seconds Orbital eigenvalues (eV) -50.49649 -47.98608 -47.97702 -40.46551 -38.37030 -35.18638 -34.17564 -33.35240 -32.10662 -30.30157 -28.27688 -26.67368 -26.43736 -24.23738 -22.92888 -22.37607 -20.79705 -20.15824 -19.60869 -18.96448 -18.67588 -18.04314 -17.13108 -16.63823 -16.58723 -16.02479 -15.12455 -14.87137 -14.73677 -14.67242 -14.44072 -14.40296 -14.16069 -14.11538 -14.01450 -13.84334 -13.35539 -13.22208 -13.02300 -12.87434 -12.77740 -12.76384 -12.27606 -12.09816 -11.92254 -11.77834 -11.49576 -11.19271 -11.05457 -10.83278 -10.65405 -10.47349 -10.32809 -10.12206 -9.99051 -9.66008 -8.85623 -8.84708 -6.91309 -5.75483 -3.04185 2.27323 2.34793 2.72300 3.40725 3.45360 3.49427 3.50634 3.58047 3.65809 4.13768 4.26103 4.35663 4.43468 4.52740 4.65261 4.68364 4.86630 5.04131 5.12235 5.17659 5.19209 5.28062 5.30688 5.44333 5.50089 5.58096 5.67909 5.73190 5.83160 5.96072 5.96480 5.99963 6.11001 6.25440 6.35773 6.36491 6.82859 6.87168 7.26749 7.70690 7.87684 8.43717 9.54568 10.12685 10.47058 11.47466 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002159 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.288845 B =12962.852704 C =13870.363166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.102 4.102 3 H 0.088 0.912 4 C 0.100 3.900 5 N -0.616 5.616 6 C 0.530 3.470 7 O -0.537 6.537 8 C -0.142 4.142 9 C -0.152 4.152 10 C 0.453 3.547 11 F -0.184 7.184 12 F -0.182 7.182 13 F -0.184 7.184 14 C 0.111 3.889 15 C -0.089 4.089 16 H 0.087 0.913 17 C -0.115 4.115 18 C 0.151 3.849 19 N -0.734 5.734 20 C -0.239 4.239 21 H 0.069 0.931 22 C -0.015 4.015 23 N -0.935 5.935 24 Si 0.908 3.092 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.064 0.936 41 H 0.019 0.981 42 H 0.018 0.982 43 H 0.383 0.617 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.187 -5.529 -27.629 28.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.106 0.894 4 C -0.023 4.023 5 N -0.350 5.350 6 C 0.318 3.682 7 O -0.414 6.414 8 C -0.182 4.182 9 C -0.190 4.190 10 C 0.399 3.601 11 F -0.165 7.165 12 F -0.164 7.164 13 F -0.166 7.166 14 C -0.011 4.011 15 C -0.109 4.109 16 H 0.105 0.895 17 C -0.153 4.153 18 C 0.024 3.976 19 N -0.378 5.378 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.211 4.211 23 N -0.584 5.584 24 Si 0.739 3.261 25 H -0.212 1.212 26 H -0.217 1.217 27 H -0.213 1.213 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.095 0.905 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.476 -5.853 -27.336 28.065 hybrid contribution 0.201 -0.012 0.647 0.677 sum -2.276 -5.865 -26.690 27.421 Atomic orbital electron populations 1.21701 0.93483 1.02142 1.02509 1.22435 0.96420 0.99590 0.93627 0.89358 1.22515 0.83155 0.98478 0.98156 1.48503 1.12294 1.66519 1.07643 1.19868 0.82987 0.77417 0.87888 1.90762 1.25745 1.47395 1.77548 1.21595 0.98355 1.05301 0.92930 1.22624 1.01155 1.08466 0.86762 1.20585 0.73727 0.73496 0.92285 1.93191 1.92582 1.37265 1.93505 1.93203 1.47173 1.91322 1.84682 1.93189 1.60054 1.70426 1.92912 1.22161 0.98516 1.02272 0.78173 1.22294 0.94945 0.98853 0.94775 0.89497 1.21731 1.01948 0.98085 0.93550 1.20683 0.96963 0.93274 0.86724 1.42354 1.78589 1.09602 1.07268 1.19192 1.35027 0.94443 0.88391 0.91258 1.24743 1.02346 0.95759 0.98230 1.69647 1.54436 1.04543 1.29745 0.86257 0.78811 0.77672 0.83404 1.21242 1.21674 1.21262 0.91491 0.92460 0.92358 0.90604 0.90929 0.87590 0.87547 0.86267 0.86320 0.90534 0.91101 0.91255 0.91680 0.96330 0.96460 0.78333 0.93478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 9.31 37.16 0.35 -0.67 16 2 C -0.10 -0.87 3.09 -88.47 -0.27 -1.14 16 3 H 0.09 0.80 8.05 -51.93 -0.42 0.39 16 4 C 0.10 0.74 6.16 -2.52 -0.02 0.72 16 5 N -0.62 -6.49 3.33 -170.51 -0.57 -7.06 16 6 C 0.53 5.86 7.85 -10.99 -0.09 5.77 16 7 O -0.54 -8.10 16.31 5.56 0.09 -8.01 16 8 C -0.14 -0.97 4.46 -27.88 -0.12 -1.10 16 9 C -0.15 -1.05 4.55 -26.73 -0.12 -1.17 16 10 C 0.45 3.31 3.16 37.16 0.12 3.43 16 11 F -0.18 -1.45 16.80 2.25 0.04 -1.41 16 12 F -0.18 -1.54 17.32 2.25 0.04 -1.51 16 13 F -0.18 -1.43 16.80 2.25 0.04 -1.39 16 14 C 0.11 1.39 5.61 -3.06 -0.02 1.37 16 15 C -0.09 -1.00 2.45 -88.79 -0.22 -1.22 16 16 H 0.09 0.94 8.04 -51.93 -0.42 0.52 16 17 C -0.12 -1.70 4.71 -26.74 -0.13 -1.83 16 18 C 0.15 2.97 6.11 -4.04 -0.02 2.94 16 19 N -0.73 -18.73 5.60 -59.91 -0.34 -19.07 16 20 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 21 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 24 Si 0.91 22.65 29.55 -169.99 -5.02 17.62 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 28 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 31 H 0.08 0.42 7.48 -51.93 -0.39 0.03 16 32 H 0.07 0.46 7.99 -51.92 -0.41 0.04 16 33 H 0.11 0.56 7.80 -51.93 -0.41 0.15 16 34 H 0.11 0.58 7.51 -51.93 -0.39 0.19 16 35 H 0.12 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.12 0.81 8.10 -51.93 -0.42 0.39 16 37 H 0.08 1.12 7.76 -51.93 -0.40 0.71 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 40 H 0.06 1.00 8.06 -51.93 -0.42 0.58 16 41 H 0.02 0.38 7.49 -51.93 -0.39 -0.01 16 42 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 10.20 7.67 -40.82 -0.31 9.89 16 44 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -33.34 372.00 -7.06 -40.40 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -6.88 Total: 2.96 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -0.79 Total: -0.38 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.18 Total: -53.90 kcal Atomic # 8 Polarization: -8.10 SS G_CDS: 0.09 Total: -8.01 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.11 Total: -4.31 kcal Atomic # 14 Polarization: 22.65 SS G_CDS: -5.02 Total: 17.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.34 -7.06 -40.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104032173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.836 kcal (2) G-P(sol) polarization free energy of solvation -33.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.78 seconds