Wall clock time and date at job start Tue Mar 31 2020 16:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 110.91255 * 2 1 4 4 C 1.54912 * 111.00695 * 236.10082 * 2 1 3 5 5 N 1.47431 * 104.82949 * 204.91801 * 4 2 1 6 6 C 1.34774 * 125.64341 * 204.09147 * 5 4 2 7 7 O 1.21281 * 119.99469 * 180.02562 * 6 5 4 8 8 C 1.50701 * 120.00149 * 0.03974 * 6 5 4 9 9 C 1.52999 * 109.47032 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47364 * 179.97438 * 9 8 6 11 11 F 1.39898 * 109.47156 * 59.99738 * 10 9 8 12 12 F 1.39901 * 109.47604 * 179.97438 * 10 9 8 13 13 F 1.39901 * 109.47069 * 300.00199 * 10 9 8 14 14 C 1.47023 * 108.70590 * 24.12456 * 5 4 2 15 15 C 1.54328 * 107.27043 * 358.94013 * 14 5 4 16 16 H 1.09000 * 110.71672 * 96.34629 * 15 14 5 17 17 C 1.52992 * 110.72106 * 219.44112 * 15 14 5 18 18 C 1.52997 * 109.47482 * 293.55011 * 17 15 14 19 19 N 1.46505 * 109.47212 * 179.97438 * 18 17 15 20 20 C 1.36936 * 119.99992 * 179.97438 * 19 18 17 21 21 H 1.08006 * 119.99834 * 0.02562 * 20 19 18 22 22 C 1.38801 * 120.00093 * 180.02562 * 20 19 18 23 23 N 1.31619 * 120.00176 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 120.00265 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46725 * 59.99976 * 24 22 20 26 26 H 1.48498 * 109.47172 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46920 * 300.00189 * 24 22 20 28 28 H 1.08997 * 109.47132 * 296.09832 * 1 2 3 29 29 H 1.09005 * 109.47105 * 56.10327 * 1 2 3 30 30 H 1.09001 * 109.46710 * 176.09648 * 1 2 3 31 31 H 1.08992 * 110.36783 * 86.07310 * 4 2 1 32 32 H 1.09008 * 110.45850 * 323.79680 * 4 2 1 33 33 H 1.08998 * 109.46992 * 299.99638 * 8 6 5 34 34 H 1.08998 * 109.47062 * 60.00236 * 8 6 5 35 35 H 1.09002 * 109.47236 * 299.99686 * 9 8 6 36 36 H 1.09006 * 109.47467 * 59.99510 * 9 8 6 37 37 H 1.08996 * 109.87920 * 239.53158 * 14 5 4 38 38 H 1.08996 * 109.88311 * 118.35693 * 14 5 4 39 39 H 1.09002 * 109.47103 * 173.54764 * 17 15 14 40 40 H 1.08998 * 109.46862 * 53.55576 * 17 15 14 41 41 H 1.09002 * 109.47153 * 59.99783 * 18 17 15 42 42 H 1.09001 * 109.46832 * 299.99974 * 18 17 15 43 43 H 0.96996 * 119.99606 * 0.02562 * 19 18 17 44 44 H 0.97001 * 120.00803 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9191 1.0182 0.0000 4 6 2.0854 -0.8066 -1.2003 5 7 3.4273 -1.2430 -0.7732 6 6 4.4478 -1.5615 -1.5939 7 8 5.5128 -1.9098 -1.1300 8 6 4.2656 -1.4844 -3.0879 9 6 5.5657 -1.8951 -3.7821 10 6 5.3805 -1.8175 -5.2988 11 9 5.0518 -0.5071 -5.6620 12 9 6.5695 -2.1925 -5.9336 13 9 4.3511 -2.6813 -5.6878 14 6 3.4675 -1.2741 0.6961 15 6 2.0862 -0.8078 1.2023 16 1 1.4479 -1.6632 1.4239 17 6 2.2349 0.0876 2.4338 18 6 2.7848 -0.7361 3.6000 19 7 2.9278 0.1215 4.7791 20 6 3.4053 -0.4004 5.9516 21 1 3.6768 -1.4443 6.0069 22 6 3.5402 0.4120 7.0689 23 7 3.2088 1.6840 7.0016 24 14 4.1923 -0.2999 8.6682 25 1 5.5586 -0.8388 8.4493 26 1 4.2407 0.7660 9.7010 27 1 3.2965 -1.3925 9.1252 28 1 -0.3633 0.4521 0.9229 29 1 -0.3633 0.5731 -0.8530 30 1 -0.3633 -1.0253 -0.0700 31 1 2.1560 -0.1720 -2.0836 32 1 1.4526 -1.6704 -1.4043 33 1 3.4638 -2.1576 -3.3913 34 1 4.0093 -0.4633 -3.3704 35 1 6.3678 -1.2223 -3.4787 36 1 5.8217 -2.9163 -3.4994 37 1 4.2426 -0.5996 1.0600 38 1 3.6651 -2.2893 1.0402 39 1 1.2618 0.4969 2.7051 40 1 2.9222 0.9032 2.2091 41 1 3.7579 -1.1454 3.3287 42 1 2.0974 -1.5517 3.8246 43 1 2.6835 1.0589 4.7294 44 1 3.3028 2.2517 7.7825 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104032173.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:05 Heat of formation + Delta-G solvation = -220.844293 kcal Electronic energy + Delta-G solvation = -27170.758856 eV Core-core repulsion = 22706.523906 eV Total energy + Delta-G solvation = -4464.234950 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -51.09412 -48.60175 -48.56432 -41.32128 -39.29348 -36.87956 -34.90663 -34.53554 -33.44997 -31.81521 -29.33632 -27.67262 -27.17312 -25.78433 -24.11361 -23.37032 -21.97818 -21.05345 -20.40575 -19.54987 -19.34082 -19.16408 -18.66513 -17.50683 -17.39148 -16.78392 -16.66219 -15.92154 -15.65409 -15.49639 -15.43075 -15.33726 -15.05650 -15.00720 -14.83546 -14.72249 -14.69511 -14.34155 -14.12965 -13.81310 -13.57603 -13.50483 -13.14803 -13.04064 -12.84420 -12.73873 -12.64327 -12.51587 -12.39722 -12.28133 -12.15352 -11.90877 -11.63851 -11.54168 -11.18488 -11.03040 -10.93332 -9.72252 -9.02287 -7.97352 -5.26548 1.45521 1.48980 1.52032 1.55114 1.63046 2.00022 2.54458 2.81886 2.99744 3.09140 3.35803 3.39446 3.53374 3.65277 3.69042 3.93613 3.94915 4.13421 4.25547 4.33047 4.37438 4.43839 4.51897 4.59771 4.63763 4.67367 4.72951 4.79009 4.80367 4.90899 4.94381 5.04371 5.17580 5.21963 5.29967 5.35211 5.43242 5.47506 5.56253 6.25505 6.46957 7.03874 7.31295 8.07724 8.30772 9.26018 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.020701 B = 0.002159 C = 0.002018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.288845 B =12962.852704 C =13870.363166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.095 4.095 3 H 0.083 0.917 4 C 0.100 3.900 5 N -0.617 5.617 6 C 0.524 3.476 7 O -0.588 6.588 8 C -0.132 4.132 9 C -0.149 4.149 10 C 0.461 3.539 11 F -0.185 7.185 12 F -0.190 7.190 13 F -0.184 7.184 14 C 0.111 3.889 15 C -0.080 4.080 16 H 0.097 0.903 17 C -0.100 4.100 18 C 0.149 3.851 19 N -0.748 5.748 20 C -0.250 4.250 21 H 0.073 0.927 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.975 3.025 25 H -0.280 1.280 26 H -0.293 1.293 27 H -0.276 1.276 28 H 0.053 0.947 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.117 0.883 37 H 0.047 0.953 38 H 0.056 0.944 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.012 0.988 42 H 0.022 0.978 43 H 0.374 0.626 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.558 -6.175 -29.416 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.114 4.114 3 H 0.101 0.899 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.314 3.686 7 O -0.469 6.469 8 C -0.171 4.171 9 C -0.187 4.187 10 C 0.407 3.593 11 F -0.167 7.167 12 F -0.172 7.172 13 F -0.166 7.166 14 C -0.012 4.012 15 C -0.100 4.100 16 H 0.115 0.885 17 C -0.138 4.138 18 C 0.023 3.977 19 N -0.391 5.391 20 C -0.382 4.382 21 H 0.091 0.909 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.201 1.201 28 H 0.072 0.928 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.146 0.854 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.073 0.927 41 H 0.030 0.970 42 H 0.040 0.960 43 H 0.206 0.794 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -3.883 -6.523 -29.168 30.140 hybrid contribution 0.634 0.164 1.164 1.336 sum -3.249 -6.359 -28.004 28.900 Atomic orbital electron populations 1.21684 0.91970 1.03058 1.02747 1.22410 0.97528 0.98989 0.92485 0.89890 1.22770 0.81382 0.99631 0.98391 1.48608 1.13652 1.66089 1.06562 1.20634 0.82157 0.76223 0.89549 1.90739 1.27765 1.49676 1.78698 1.21613 0.98921 1.07249 0.89304 1.22575 1.01318 1.08377 0.86451 1.20516 0.73376 0.73307 0.92145 1.93189 1.92559 1.37394 1.93542 1.93189 1.47746 1.91404 1.84846 1.93189 1.60002 1.70450 1.92940 1.21965 0.98413 1.00692 0.80110 1.22182 0.94571 0.98934 0.94264 0.88460 1.21562 1.01319 0.97703 0.93258 1.20865 0.96876 0.93397 0.86582 1.42601 1.78412 1.09823 1.08284 1.19600 1.34285 0.94695 0.89578 0.90927 1.25595 1.03336 0.96224 1.01676 1.69802 1.55986 1.05763 1.30420 0.85200 0.78371 0.77000 0.79134 1.20601 1.21857 1.20146 0.92791 0.90488 0.91360 0.87611 0.88732 0.85127 0.85371 0.86713 0.86489 0.93494 0.92521 0.90902 0.92683 0.97024 0.96045 0.79407 0.93885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.31 71.98 0.67 -0.87 16 2 C -0.10 -1.39 3.09 -9.40 -0.03 -1.42 16 3 H 0.08 1.34 8.05 -2.39 -0.02 1.32 16 4 C 0.10 1.12 6.16 86.86 0.53 1.65 16 5 N -0.62 -12.06 3.33 -811.77 -2.70 -14.76 16 6 C 0.52 10.99 7.85 87.66 0.69 11.68 16 7 O -0.59 -18.05 16.31 -3.03 -0.05 -18.10 16 8 C -0.13 -1.45 4.46 29.85 0.13 -1.32 16 9 C -0.15 -1.84 4.55 30.59 0.14 -1.70 16 10 C 0.46 5.88 3.16 71.98 0.23 6.11 16 11 F -0.19 -2.51 16.80 44.97 0.76 -1.76 16 12 F -0.19 -3.01 17.32 44.97 0.78 -2.23 16 13 F -0.18 -2.42 16.80 44.97 0.76 -1.67 16 14 C 0.11 2.81 5.61 86.73 0.49 3.29 16 15 C -0.08 -1.72 2.45 -9.61 -0.02 -1.74 16 16 H 0.10 1.93 8.04 -2.39 -0.02 1.91 16 17 C -0.10 -2.98 4.71 30.59 0.14 -2.83 16 18 C 0.15 5.96 6.11 86.38 0.53 6.49 16 19 N -0.75 -39.03 5.60 -343.45 -1.92 -40.95 16 20 C -0.25 -14.37 9.99 84.03 0.84 -13.53 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 22 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 23 N -0.97 -60.09 13.06 21.65 0.28 -59.80 16 24 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 25 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 26 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.07 0.65 8.08 -2.39 -0.02 0.63 16 31 H 0.11 0.64 7.48 -2.39 -0.02 0.62 16 32 H 0.09 0.74 7.99 -2.38 -0.02 0.72 16 33 H 0.13 0.85 7.80 -2.39 -0.02 0.83 16 34 H 0.13 0.91 7.51 -2.39 -0.02 0.89 16 35 H 0.11 1.55 8.10 -2.39 -0.02 1.53 16 36 H 0.12 1.51 8.10 -2.38 -0.02 1.49 16 37 H 0.05 1.45 7.76 -2.39 -0.02 1.43 16 38 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 40 H 0.05 1.74 8.06 -2.39 -0.02 1.72 16 41 H 0.01 0.49 7.49 -2.39 -0.02 0.47 16 42 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.37 20.50 7.67 -92.71 -0.71 19.79 16 44 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 Total: -1.00 -73.72 372.00 5.02 -68.69 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.29 Total: 19.85 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: 4.81 Total: 1.82 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -4.34 Total: -115.52 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.10 kcal Atomic # 9 Polarization: -7.95 SS G_CDS: 2.29 Total: -5.66 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -73.72 5.02 -68.69 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104032173.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.150 kcal (2) G-P(sol) polarization free energy of solvation -73.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -225.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds