Wall clock time and date at job start Tue Mar 31 2020 16:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99954 * 2 1 4 4 C 1.50696 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.35137 * 125.61379 * 90.02082 * 4 3 2 6 6 C 1.40360 * 107.11359 * 179.70674 * 5 4 3 7 7 C 1.36540 * 106.71022 * 0.40851 * 6 5 4 8 8 C 1.46659 * 125.98728 * 179.84797 * 7 6 5 9 9 O 1.21697 * 120.00235 * 359.72163 * 8 7 6 10 10 N 1.34777 * 119.99837 * 179.71746 * 8 7 6 11 11 C 1.48315 * 127.77039 * 179.97438 * 10 8 7 12 12 C 1.54385 * 104.53750 * 219.53004 * 11 10 8 13 13 H 1.08997 * 110.34548 * 95.18221 * 12 11 10 14 14 C 1.53004 * 110.34091 * 217.33303 * 12 11 10 15 15 N 1.46499 * 109.47198 * 292.12406 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 C 1.54283 * 105.05420 * 336.25517 * 12 11 10 25 25 H 1.08995 * 110.34709 * 240.97088 * 24 12 11 26 26 C 1.53002 * 110.34028 * 118.81593 * 24 12 11 27 27 C 1.48139 * 127.84024 * 0.02571 * 10 8 7 28 28 O 1.33924 * 125.62393 * 269.97522 * 4 3 2 29 29 H 1.09007 * 109.47251 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47242 * 299.99624 * 1 2 3 31 31 H 1.09004 * 109.47202 * 59.99857 * 1 2 3 32 32 H 1.09001 * 109.47018 * 59.99990 * 3 2 1 33 33 H 1.08993 * 109.47396 * 300.00086 * 3 2 1 34 34 H 1.07994 * 126.43910 * 359.96167 * 5 4 3 35 35 H 1.08011 * 126.64619 * 180.29776 * 6 5 4 36 36 H 1.08998 * 110.38541 * 100.79826 * 11 10 8 37 37 H 1.09004 * 110.50344 * 338.31646 * 11 10 8 38 38 H 1.09009 * 109.46730 * 172.12193 * 14 12 11 39 39 H 1.08998 * 109.46846 * 52.12738 * 14 12 11 40 40 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 41 41 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.47026 * 60.00792 * 26 24 12 43 43 H 1.09009 * 109.47071 * 179.97438 * 26 24 12 44 44 H 1.08992 * 109.47525 * 300.00076 * 26 24 12 45 45 H 1.09004 * 110.40600 * 21.62261 * 27 10 8 46 46 H 1.09000 * 110.51348 * 259.24364 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2974 1.1245 -1.0976 6 6 5.6246 1.0262 -0.6517 7 6 5.5811 1.0239 0.7130 8 6 6.7364 0.9331 1.6119 9 8 7.8597 0.8451 1.1521 10 7 6.5540 0.9471 2.9472 11 6 7.5890 0.8652 4.0063 12 6 6.9640 -0.0399 5.0897 13 1 7.2862 -1.0721 4.9533 14 6 7.3493 0.4566 6.4847 15 7 8.7856 0.2581 6.6943 16 6 9.3615 0.6251 7.8812 17 1 8.7577 1.0650 8.6611 18 6 10.7213 0.4316 8.0820 19 7 11.4572 -0.1041 7.1312 20 14 11.5070 0.9329 9.7008 21 1 10.4715 1.5075 10.5967 22 1 12.1137 -0.2588 10.3465 23 1 12.5605 1.9482 9.4462 24 6 5.4400 0.0784 4.8804 25 1 4.9657 0.4884 5.7719 26 6 4.8420 -1.2886 4.5418 27 6 5.2754 1.0468 3.6887 28 8 4.2896 1.1255 1.0896 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9661 1.1504 -2.1252 35 1 6.5090 0.9626 -1.2686 36 1 7.7966 1.8555 4.4117 37 1 8.5012 0.4149 3.6148 38 1 6.7917 -0.1025 7.2362 39 1 7.1126 1.5171 6.5711 40 1 9.3278 -0.1374 5.9939 41 1 12.4075 -0.2390 7.2715 42 1 5.0356 -1.9826 5.3598 43 1 3.7662 -1.1889 4.3974 44 1 5.2980 -1.6683 3.6275 45 1 4.4441 0.7341 3.0567 46 1 5.1189 2.0650 4.0450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106397104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:28 Heat of formation + Delta-G solvation = -45.302185 kcal Electronic energy + Delta-G solvation = -27303.504838 eV Core-core repulsion = 23388.738705 eV Total energy + Delta-G solvation = -3914.766133 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.96583 -39.90434 -38.33847 -37.89466 -34.67039 -33.49151 -32.69115 -31.57807 -31.34660 -29.23720 -27.80001 -26.57329 -26.19822 -25.14489 -23.40498 -22.14462 -21.75466 -21.00557 -19.99972 -19.73632 -17.81348 -17.28811 -16.92831 -16.66279 -16.28578 -16.26865 -15.71769 -15.51536 -14.68588 -14.49044 -14.16227 -13.99682 -13.60947 -13.48808 -13.36300 -13.17687 -13.11520 -12.99625 -12.88702 -12.41142 -12.31074 -12.00623 -11.92330 -11.63613 -11.25981 -11.13820 -10.85589 -10.57260 -10.51070 -10.32283 -10.28936 -10.27685 -10.18042 -9.95023 -9.65591 -8.97832 -8.87069 -8.60109 -6.91194 -5.74253 -3.03681 0.78961 1.96385 2.28624 2.94325 3.13358 3.45044 3.49615 3.50217 3.52837 4.20376 4.40588 4.58132 4.58636 4.64066 4.69379 4.74228 4.84752 4.87593 4.92255 4.95346 5.20023 5.28826 5.39019 5.45294 5.51031 5.55986 5.59483 5.60325 5.62278 5.81480 5.87054 6.00371 6.07235 6.08706 6.12981 6.21572 6.24071 6.40179 6.49561 6.50951 6.66557 6.72230 6.85159 7.49554 7.71894 8.01864 8.43987 9.55255 10.12378 10.46726 11.48451 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.002534 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.041771 B =11046.668241 C =11905.352605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.141 3.859 4 C 0.001 3.999 5 C -0.190 4.190 6 C -0.128 4.128 7 C -0.052 4.052 8 C 0.616 3.384 9 O -0.518 6.518 10 N -0.611 5.611 11 C 0.116 3.884 12 C -0.104 4.104 13 H 0.084 0.916 14 C 0.164 3.836 15 N -0.733 5.733 16 C -0.240 4.240 17 H 0.071 0.929 18 C -0.014 4.014 19 N -0.931 5.931 20 Si 0.907 3.093 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.100 4.100 25 H 0.090 0.910 26 C -0.141 4.141 27 C 0.100 3.900 28 O -0.151 6.151 29 H 0.091 0.909 30 H 0.046 0.954 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.157 0.843 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.023 0.977 39 H 0.022 0.978 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.052 0.948 45 H 0.088 0.912 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.874 2.709 -16.449 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.304 6.304 3 C 0.065 3.935 4 C -0.051 4.051 5 C -0.209 4.209 6 C -0.149 4.149 7 C -0.105 4.105 8 C 0.404 3.596 9 O -0.396 6.396 10 N -0.343 5.343 11 C -0.005 4.005 12 C -0.124 4.124 13 H 0.102 0.898 14 C 0.036 3.964 15 N -0.378 5.378 16 C -0.371 4.371 17 H 0.089 0.911 18 C -0.210 4.210 19 N -0.580 5.580 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.120 4.120 25 H 0.109 0.891 26 C -0.198 4.198 27 C -0.022 4.022 28 O -0.047 6.047 29 H 0.109 0.891 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.104 0.896 34 H 0.175 0.825 35 H 0.181 0.819 36 H 0.100 0.900 37 H 0.107 0.893 38 H 0.041 0.959 39 H 0.039 0.961 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.072 0.928 45 H 0.106 0.894 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -24.214 2.577 -16.306 29.306 hybrid contribution 0.499 0.338 0.491 0.778 sum -23.714 2.915 -15.815 28.653 Atomic orbital electron populations 1.22816 0.79950 1.03432 1.00339 1.88002 1.20344 1.26507 1.95516 1.20714 0.84149 0.86012 1.02652 1.22235 0.92806 1.05404 0.84680 1.21603 0.92351 1.07300 0.99696 1.21959 0.98626 1.01390 0.92896 1.22199 0.81886 1.11773 0.94603 1.16115 0.85908 0.77628 0.79980 1.90917 1.22153 1.51410 1.75162 1.48957 1.10576 1.70623 1.04173 1.22575 0.91319 1.00932 0.85645 1.22414 0.93378 1.00473 0.96086 0.89771 1.20724 0.87272 0.97119 0.91321 1.42392 1.02546 1.75367 1.17478 1.19247 0.91616 1.33590 0.92673 0.91129 1.24760 0.96465 1.01774 0.98014 1.69676 1.06007 1.49708 1.32572 0.86122 0.79223 0.77674 0.83182 1.20585 1.21898 1.21875 1.22121 0.96289 0.95926 0.97637 0.89127 1.21824 0.99976 0.96194 1.01789 1.22700 0.86316 0.99903 0.93327 1.84114 1.16380 1.70012 1.34213 0.89071 0.93558 0.93665 0.91032 0.89621 0.82519 0.81936 0.89954 0.89349 0.95878 0.96056 0.78195 0.93520 0.92006 0.92772 0.92844 0.89397 0.90734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 11.01 101.05 1.11 1.26 16 2 O -0.38 -3.24 10.69 -35.23 -0.38 -3.62 16 3 C 0.14 0.96 6.46 36.00 0.23 1.19 16 4 C 0.00 0.01 6.94 -35.41 -0.25 -0.24 16 5 C -0.19 -1.83 10.77 -39.89 -0.43 -2.26 16 6 C -0.13 -1.53 10.62 -39.40 -0.42 -1.95 16 7 C -0.05 -0.72 6.97 -36.80 -0.26 -0.97 16 8 C 0.62 10.11 7.88 -12.86 -0.10 10.01 16 9 O -0.52 -10.15 17.13 5.19 0.09 -10.06 16 10 N -0.61 -9.35 3.32 -170.69 -0.57 -9.91 16 11 C 0.12 1.98 6.34 -2.32 -0.01 1.96 16 12 C -0.10 -1.67 2.76 -89.22 -0.25 -1.92 16 13 H 0.08 1.45 7.71 -51.93 -0.40 1.05 16 14 C 0.16 3.17 5.37 -4.04 -0.02 3.15 16 15 N -0.73 -18.44 5.46 -59.90 -0.33 -18.76 16 16 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 19 N -0.93 -28.53 13.06 55.49 0.72 -27.81 16 20 Si 0.91 22.58 29.55 -169.99 -5.02 17.56 16 21 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 22 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 23 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 24 C -0.10 -1.26 3.31 -89.20 -0.30 -1.55 16 25 H 0.09 1.04 7.71 -51.93 -0.40 0.64 16 26 C -0.14 -1.63 8.91 37.16 0.33 -1.30 16 27 C 0.10 1.23 6.25 -2.39 -0.01 1.22 16 28 O -0.15 -1.83 7.80 5.02 0.04 -1.79 16 29 H 0.09 0.36 8.14 -51.92 -0.42 -0.07 16 30 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.04 0.14 8.14 -51.93 -0.42 -0.28 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.16 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 36 H 0.08 1.44 7.78 -51.93 -0.40 1.04 16 37 H 0.09 1.69 7.88 -51.93 -0.41 1.28 16 38 H 0.02 0.45 8.14 -51.92 -0.42 0.03 16 39 H 0.02 0.41 8.02 -51.93 -0.42 0.00 16 40 H 0.38 10.26 7.56 -40.82 -0.31 9.95 16 41 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.54 8.14 -51.92 -0.42 0.11 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.02 5.27 -51.93 -0.27 0.75 16 46 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 383.03 15.07 5.77 5.77 Total: -1.00 -34.21 383.03 -7.52 -41.73 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -7.23 Total: 5.67 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: -0.61 Total: 1.23 kcal Atomic # 7 Polarization: -56.32 SS G_CDS: -0.17 Total: -56.49 kcal Atomic # 8 Polarization: -15.22 SS G_CDS: -0.25 Total: -15.47 kcal Atomic # 14 Polarization: 22.58 SS G_CDS: -5.02 Total: 17.56 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.21 -7.52 -41.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106397104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.574 kcal (2) G-P(sol) polarization free energy of solvation -34.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds