Wall clock time and date at job start Tue Mar 31 2020 16:26:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 113.99954 * 2 1 4 4 C 1.50696 * 109.47012 * 179.97438 * 3 2 1 5 5 C 1.35137 * 125.61379 * 90.02082 * 4 3 2 6 6 C 1.40360 * 107.11359 * 179.70674 * 5 4 3 7 7 C 1.36540 * 106.71022 * 0.40851 * 6 5 4 8 8 C 1.46659 * 125.98728 * 179.84797 * 7 6 5 9 9 O 1.21697 * 120.00235 * 359.72163 * 8 7 6 10 10 N 1.34777 * 119.99837 * 179.71746 * 8 7 6 11 11 C 1.48315 * 127.77039 * 179.97438 * 10 8 7 12 12 C 1.54385 * 104.53750 * 219.53004 * 11 10 8 13 13 H 1.08997 * 110.34548 * 95.18221 * 12 11 10 14 14 C 1.53004 * 110.34091 * 217.33303 * 12 11 10 15 15 N 1.46499 * 109.47198 * 292.12406 * 14 12 11 16 16 C 1.36939 * 119.99933 * 180.27608 * 15 14 12 17 17 H 1.08001 * 119.99700 * 359.72658 * 16 15 14 18 18 C 1.38810 * 120.00095 * 179.71972 * 16 15 14 19 19 N 1.31624 * 119.99740 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00044 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47201 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47080 * 120.00466 * 20 18 16 23 23 H 1.48506 * 109.47018 * 240.00565 * 20 18 16 24 24 C 1.54283 * 105.05420 * 336.25517 * 12 11 10 25 25 H 1.08995 * 110.34709 * 240.97088 * 24 12 11 26 26 C 1.53002 * 110.34028 * 118.81593 * 24 12 11 27 27 C 1.48139 * 127.84024 * 0.02571 * 10 8 7 28 28 O 1.33924 * 125.62393 * 269.97522 * 4 3 2 29 29 H 1.09007 * 109.47251 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47242 * 299.99624 * 1 2 3 31 31 H 1.09004 * 109.47202 * 59.99857 * 1 2 3 32 32 H 1.09001 * 109.47018 * 59.99990 * 3 2 1 33 33 H 1.08993 * 109.47396 * 300.00086 * 3 2 1 34 34 H 1.07994 * 126.43910 * 359.96167 * 5 4 3 35 35 H 1.08011 * 126.64619 * 180.29776 * 6 5 4 36 36 H 1.08998 * 110.38541 * 100.79826 * 11 10 8 37 37 H 1.09004 * 110.50344 * 338.31646 * 11 10 8 38 38 H 1.09009 * 109.46730 * 172.12193 * 14 12 11 39 39 H 1.08998 * 109.46846 * 52.12738 * 14 12 11 40 40 H 0.97001 * 119.99790 * 359.97438 * 15 14 12 41 41 H 0.96998 * 119.99409 * 179.97438 * 19 18 16 42 42 H 1.09003 * 109.47026 * 60.00792 * 26 24 12 43 43 H 1.09009 * 109.47071 * 179.97438 * 26 24 12 44 44 H 1.08992 * 109.47525 * 300.00076 * 26 24 12 45 45 H 1.09004 * 110.40600 * 21.62261 * 27 10 8 46 46 H 1.09000 * 110.51348 * 259.24364 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5124 1.1865 0.0006 5 6 4.2974 1.1245 -1.0976 6 6 5.6246 1.0262 -0.6517 7 6 5.5811 1.0239 0.7130 8 6 6.7364 0.9331 1.6119 9 8 7.8597 0.8451 1.1521 10 7 6.5540 0.9471 2.9472 11 6 7.5890 0.8652 4.0063 12 6 6.9640 -0.0399 5.0897 13 1 7.2862 -1.0721 4.9533 14 6 7.3493 0.4566 6.4847 15 7 8.7856 0.2581 6.6943 16 6 9.3615 0.6251 7.8812 17 1 8.7577 1.0650 8.6611 18 6 10.7213 0.4316 8.0820 19 7 11.4572 -0.1041 7.1312 20 14 11.5070 0.9329 9.7008 21 1 10.4715 1.5075 10.5967 22 1 12.1137 -0.2588 10.3465 23 1 12.5605 1.9482 9.4462 24 6 5.4400 0.0784 4.8804 25 1 4.9657 0.4884 5.7719 26 6 4.8420 -1.2886 4.5418 27 6 5.2754 1.0468 3.6887 28 8 4.2896 1.1255 1.0896 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8899 34 1 3.9661 1.1504 -2.1252 35 1 6.5090 0.9626 -1.2686 36 1 7.7966 1.8555 4.4117 37 1 8.5012 0.4149 3.6148 38 1 6.7917 -0.1025 7.2362 39 1 7.1126 1.5171 6.5711 40 1 9.3278 -0.1374 5.9939 41 1 12.4075 -0.2390 7.2715 42 1 5.0356 -1.9826 5.3598 43 1 3.7662 -1.1889 4.3974 44 1 5.2980 -1.6683 3.6275 45 1 4.4441 0.7341 3.0567 46 1 5.1189 2.0650 4.0450 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106397104.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:27 Heat of formation + Delta-G solvation = -68.597118 kcal Electronic energy + Delta-G solvation = -27304.514982 eV Core-core repulsion = 23388.738705 eV Total energy + Delta-G solvation = -3915.776277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.83826 -41.14646 -39.23747 -38.79370 -36.47976 -34.47042 -34.01587 -33.05472 -32.35119 -30.75124 -28.65091 -27.54058 -27.21179 -26.25250 -25.09680 -23.22502 -22.81736 -22.14757 -21.05860 -21.00087 -19.28731 -18.58231 -17.95269 -17.55999 -17.27846 -16.92746 -16.76140 -16.56041 -16.32819 -15.86940 -15.38034 -15.19334 -14.90752 -14.78768 -14.57553 -14.29939 -14.21402 -14.01613 -13.77060 -13.56171 -13.35312 -13.07435 -12.91667 -12.83393 -12.71671 -12.50809 -12.33723 -12.09530 -11.99528 -11.82597 -11.65760 -11.46111 -11.43582 -11.13091 -10.94770 -10.71511 -10.07774 -9.65082 -8.99711 -7.94132 -5.23553 -0.17208 1.13157 1.35248 1.47552 1.48713 1.58776 1.85871 1.97518 2.56380 2.93993 3.31557 3.40041 3.50026 3.60636 3.77144 3.77989 3.84261 4.13191 4.19683 4.21521 4.30143 4.32712 4.43146 4.46279 4.53145 4.56933 4.59677 4.62925 4.68706 4.77848 4.80683 4.82820 4.84203 4.94218 5.01512 5.04750 5.16705 5.23302 5.26194 5.30874 5.46898 5.51618 5.77422 6.11289 6.27515 6.30097 6.77507 7.33549 8.09464 8.31315 9.29798 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.002534 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.041771 B =11046.668241 C =11905.352605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.415 6.415 3 C 0.139 3.861 4 C 0.009 3.991 5 C -0.191 4.191 6 C -0.124 4.124 7 C -0.085 4.085 8 C 0.610 3.390 9 O -0.567 6.567 10 N -0.611 5.611 11 C 0.120 3.880 12 C -0.093 4.093 13 H 0.068 0.932 14 C 0.164 3.836 15 N -0.749 5.749 16 C -0.240 4.240 17 H 0.081 0.919 18 C -0.081 4.081 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.295 1.295 23 H -0.296 1.296 24 C -0.090 4.090 25 H 0.114 0.886 26 C -0.136 4.136 27 C 0.102 3.898 28 O -0.157 6.157 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.189 0.811 35 H 0.165 0.835 36 H 0.075 0.925 37 H 0.055 0.945 38 H 0.033 0.967 39 H 0.032 0.968 40 H 0.372 0.628 41 H 0.250 0.750 42 H 0.061 0.939 43 H 0.079 0.921 44 H 0.035 0.965 45 H 0.101 0.899 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.661 3.624 -16.463 33.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.335 6.335 3 C 0.063 3.937 4 C -0.044 4.044 5 C -0.210 4.210 6 C -0.145 4.145 7 C -0.137 4.137 8 C 0.401 3.599 9 O -0.449 6.449 10 N -0.342 5.342 11 C -0.002 4.002 12 C -0.113 4.113 13 H 0.087 0.913 14 C 0.038 3.962 15 N -0.391 5.391 16 C -0.372 4.372 17 H 0.099 0.901 18 C -0.273 4.273 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.186 1.186 22 H -0.222 1.222 23 H -0.223 1.223 24 C -0.110 4.110 25 H 0.132 0.868 26 C -0.194 4.194 27 C -0.019 4.019 28 O -0.053 6.053 29 H 0.112 0.888 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.104 0.896 33 H 0.136 0.864 34 H 0.206 0.794 35 H 0.182 0.818 36 H 0.093 0.907 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.050 0.950 40 H 0.203 0.797 41 H 0.059 0.941 42 H 0.080 0.920 43 H 0.098 0.902 44 H 0.055 0.945 45 H 0.119 0.881 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -28.091 3.507 -16.292 32.663 hybrid contribution 1.508 0.062 0.409 1.564 sum -26.583 3.568 -15.883 31.171 Atomic orbital electron populations 1.22996 0.78120 1.04142 1.01719 1.87944 1.22356 1.27351 1.95834 1.21004 0.81699 0.85972 1.04984 1.23064 0.94307 1.02889 0.84096 1.21955 0.90899 1.06846 1.01296 1.22237 1.00082 0.99753 0.92384 1.21665 0.82040 1.15487 0.94496 1.16505 0.86323 0.76751 0.80362 1.90872 1.24210 1.53721 1.76050 1.49008 1.11222 1.70140 1.03864 1.22338 0.90982 1.00347 0.86531 1.22240 0.96224 0.98965 0.93826 0.91312 1.20891 0.84229 0.97768 0.93303 1.42651 1.04853 1.75152 1.16447 1.19696 0.91933 1.32014 0.93520 0.90119 1.25625 0.97312 1.02839 1.01501 1.69849 1.05882 1.51840 1.34773 0.85047 0.78270 0.76883 0.79404 1.18611 1.22202 1.22323 1.22129 0.93240 0.96895 0.98695 0.86828 1.21794 1.01312 0.95315 1.00931 1.22895 0.85148 1.00896 0.92951 1.84068 1.15681 1.70312 1.35236 0.88823 0.92540 0.91896 0.89556 0.86420 0.79372 0.81782 0.90689 0.92671 0.94864 0.95043 0.79702 0.94142 0.92016 0.90222 0.94534 0.88080 0.88977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 113.37 1.25 1.41 16 2 O -0.41 -5.72 10.69 -148.98 -1.59 -7.31 16 3 C 0.14 1.38 6.46 71.23 0.46 1.84 16 4 C 0.01 0.15 6.94 24.97 0.17 0.32 16 5 C -0.19 -3.22 10.77 22.07 0.24 -2.99 16 6 C -0.12 -2.89 10.62 22.39 0.24 -2.65 16 7 C -0.08 -2.34 6.97 24.07 0.17 -2.17 16 8 C 0.61 20.94 7.88 86.44 0.68 21.62 16 9 O -0.57 -23.78 17.13 -4.34 -0.07 -23.86 16 10 N -0.61 -19.14 3.32 -812.15 -2.70 -21.84 16 11 C 0.12 4.29 6.34 86.50 0.55 4.84 16 12 C -0.09 -3.01 2.76 -9.89 -0.03 -3.04 16 13 H 0.07 2.45 7.71 -2.39 -0.02 2.43 16 14 C 0.16 6.30 5.37 86.38 0.46 6.76 16 15 N -0.75 -38.30 5.46 -343.44 -1.87 -40.17 16 16 C -0.24 -13.44 9.99 84.03 0.84 -12.60 16 17 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 18 C -0.08 -4.74 5.50 84.86 0.47 -4.27 16 19 N -0.97 -61.39 13.06 21.65 0.28 -61.11 16 20 Si 0.97 46.86 29.55 68.60 2.03 48.88 16 21 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 22 H -0.29 -14.19 7.11 99.48 0.71 -13.48 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 C -0.09 -2.10 3.31 -9.87 -0.03 -2.13 16 25 H 0.11 2.20 7.71 -2.39 -0.02 2.18 16 26 C -0.14 -2.91 8.91 71.98 0.64 -2.27 16 27 C 0.10 2.36 6.25 86.55 0.54 2.90 16 28 O -0.16 -3.55 7.80 -4.94 -0.04 -3.59 16 29 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.06 0.16 8.14 -2.38 -0.02 0.14 16 32 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.19 1.86 8.06 -2.91 -0.02 1.83 16 35 H 0.16 3.65 8.06 -2.90 -0.02 3.63 16 36 H 0.07 2.75 7.78 -2.39 -0.02 2.73 16 37 H 0.05 2.31 7.88 -2.38 -0.02 2.29 16 38 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.03 1.17 8.02 -2.39 -0.02 1.15 16 40 H 0.37 20.71 7.56 -92.71 -0.70 20.01 16 41 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 42 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 43 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.10 2.12 5.27 -2.38 -0.01 2.11 16 46 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -76.89 383.03 2.96 -73.93 By element: Atomic # 1 Polarization: 27.20 SS G_CDS: 0.28 Total: 27.48 kcal Atomic # 6 Polarization: 0.93 SS G_CDS: 6.65 Total: 7.58 kcal Atomic # 7 Polarization: -118.83 SS G_CDS: -4.29 Total: -123.11 kcal Atomic # 8 Polarization: -33.05 SS G_CDS: -1.70 Total: -34.76 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.88 kcal Total: -76.89 2.96 -73.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106397104.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.332 kcal (2) G-P(sol) polarization free energy of solvation -76.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds