Wall clock time and date at job start Tue Mar 31 2020 16:26:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46888 * 2 1 4 4 C 1.52993 * 109.47047 * 239.99909 * 2 1 3 5 5 C 1.52992 * 109.47315 * 65.57272 * 4 2 1 6 6 F 1.39896 * 109.47324 * 54.43098 * 5 4 2 7 7 F 1.39902 * 109.47290 * 174.43222 * 5 4 2 8 8 F 1.39905 * 109.47203 * 294.43103 * 5 4 2 9 9 C 1.50698 * 109.46638 * 119.99726 * 2 1 3 10 10 O 1.21280 * 119.99935 * 109.06032 * 9 2 1 11 11 N 1.34773 * 120.00205 * 289.05329 * 9 2 1 12 12 C 1.48113 * 127.03478 * 5.67396 * 11 9 2 13 13 C 1.54597 * 103.42557 * 219.28448 * 12 11 9 14 14 H 1.09005 * 110.57806 * 81.16274 * 13 12 11 15 15 C 1.52998 * 110.99090 * 204.37307 * 13 12 11 16 16 N 1.46498 * 109.47165 * 288.64801 * 15 13 12 17 17 C 1.36937 * 120.00167 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00371 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99705 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47153 * 60.00188 * 21 19 17 23 23 H 1.48507 * 109.47014 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47310 * 300.00139 * 21 19 17 25 25 C 1.54624 * 102.91034 * 322.86767 * 13 12 11 26 26 H 1.09004 * 110.32331 * 262.80593 * 25 13 12 27 27 C 1.53002 * 110.41495 * 140.63565 * 25 13 12 28 28 C 1.47491 * 127.03233 * 185.98556 * 11 9 2 29 29 H 1.08999 * 109.46623 * 174.43741 * 1 2 3 30 30 H 1.08998 * 109.47141 * 294.44012 * 1 2 3 31 31 H 1.08996 * 109.46971 * 54.44310 * 1 2 3 32 32 H 1.09008 * 109.46794 * 185.57191 * 4 2 1 33 33 H 1.09002 * 109.47596 * 305.56779 * 4 2 1 34 34 H 1.09002 * 110.66034 * 337.76634 * 12 11 9 35 35 H 1.08998 * 110.66629 * 100.88681 * 12 11 9 36 36 H 1.08996 * 109.47249 * 48.64949 * 15 13 12 37 37 H 1.09005 * 109.47263 * 168.64998 * 15 13 12 38 38 H 0.97011 * 119.99819 * 0.02562 * 16 15 13 39 39 H 0.96992 * 120.00622 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.46508 * 302.87352 * 27 25 13 41 41 H 1.09000 * 109.47230 * 62.87303 * 27 25 13 42 42 H 1.09002 * 109.46665 * 182.87548 * 27 25 13 43 43 H 1.09003 * 109.91062 * 273.87344 * 28 11 9 44 44 H 1.08996 * 109.91768 * 35.15962 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6477 0.0762 -2.4945 6 9 2.1082 1.3914 -2.3703 7 9 2.2211 -0.5138 -3.6260 8 9 0.2548 0.0804 -2.6259 9 6 2.0323 -0.7104 1.2305 10 8 2.5578 -1.7988 1.1303 11 7 1.8976 -0.1361 2.4423 12 6 1.1837 1.1225 2.7587 13 6 2.0910 1.7940 3.8150 14 1 2.9213 2.3112 3.3339 15 6 1.2900 2.7583 4.6922 16 7 0.9225 3.9404 3.9088 17 6 0.1969 4.9471 4.4878 18 1 -0.1041 4.8698 5.5221 19 6 -0.1517 6.0670 3.7453 20 7 0.2147 6.1611 2.4847 21 14 -1.1409 7.4405 4.5354 22 1 -0.3856 7.9949 5.6877 23 1 -1.3815 8.5141 3.5380 24 1 -2.4424 6.9043 5.0086 25 6 2.6013 0.5937 4.6455 26 1 1.9990 0.4730 5.5460 27 6 4.0736 0.7870 5.0139 28 6 2.4365 -0.6290 3.7237 29 1 -0.3632 -1.0228 -0.0996 30 1 -0.3633 0.4252 0.9356 31 1 -0.3633 0.5976 -0.8360 32 1 3.1256 -0.8084 -1.2006 33 1 1.5976 -1.7161 -1.3005 34 1 1.0985 1.7498 1.8714 35 1 0.1999 0.9117 3.1780 36 1 0.3865 2.2620 5.0465 37 1 1.8962 3.0621 5.5457 38 1 1.1926 4.0097 2.9796 39 1 -0.0286 6.9437 1.9660 40 1 4.6612 0.9183 4.1053 41 1 4.1775 1.6699 5.6446 42 1 4.4310 -0.0897 5.5542 43 1 1.7407 -1.3394 4.1703 44 1 3.4037 -1.1046 3.5614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106467416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:50 Heat of formation + Delta-G solvation = -191.534577 kcal Electronic energy + Delta-G solvation = -28543.660448 eV Core-core repulsion = 24080.696463 eV Total energy + Delta-G solvation = -4462.963985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -50.26416 -47.76988 -47.69510 -40.39333 -38.23214 -35.11572 -34.67161 -32.94085 -31.48268 -29.34129 -29.09773 -26.72233 -25.56187 -24.71381 -23.32628 -22.38681 -21.04623 -19.94034 -19.38298 -18.69977 -18.47793 -17.79045 -17.11238 -16.49864 -16.03764 -15.66471 -15.08474 -14.71655 -14.59170 -14.45513 -14.25617 -14.19421 -13.96617 -13.90376 -13.82539 -13.54366 -13.32521 -13.17164 -13.05211 -12.86657 -12.45496 -12.29162 -12.11706 -11.95261 -11.73242 -11.53243 -11.45327 -11.24353 -11.15536 -10.88122 -10.63532 -10.52880 -10.42973 -10.10295 -9.81655 -9.71517 -8.93010 -8.70353 -6.98953 -5.81604 -3.10918 2.49207 2.52955 2.93548 3.41101 3.46014 3.46805 3.66085 3.81396 3.90807 4.32934 4.50430 4.52161 4.63971 4.69462 4.77001 4.86105 5.00766 5.24294 5.27583 5.36674 5.39340 5.49504 5.53339 5.58368 5.60744 5.66788 5.74071 5.79759 5.86467 5.94744 6.03263 6.07142 6.08252 6.17871 6.28992 6.39493 6.64808 6.76554 7.47823 7.65027 8.03474 8.36860 9.48428 10.04201 10.38698 11.41006 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.003858 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.692958 B = 7256.028783 C = 9357.393288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.113 4.113 3 H 0.113 0.887 4 C -0.146 4.146 5 C 0.453 3.547 6 F -0.179 7.179 7 F -0.185 7.185 8 F -0.179 7.179 9 C 0.545 3.455 10 O -0.549 6.549 11 N -0.616 5.616 12 C 0.105 3.895 13 C -0.103 4.103 14 H 0.085 0.915 15 C 0.164 3.836 16 N -0.732 5.732 17 C -0.243 4.243 18 H 0.070 0.930 19 C -0.010 4.010 20 N -0.933 5.933 21 Si 0.906 3.094 22 H -0.286 1.286 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.101 4.101 26 H 0.088 0.912 27 C -0.141 4.141 28 C 0.112 3.888 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.117 0.883 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.383 0.617 39 H 0.256 0.744 40 H 0.054 0.946 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.065 0.935 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.407 -15.520 -4.625 16.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.134 4.134 3 H 0.131 0.869 4 C -0.185 4.185 5 C 0.399 3.601 6 F -0.161 7.161 7 F -0.167 7.167 8 F -0.161 7.161 9 C 0.333 3.667 10 O -0.428 6.428 11 N -0.349 5.349 12 C -0.017 4.017 13 C -0.122 4.122 14 H 0.103 0.897 15 C 0.036 3.964 16 N -0.377 5.377 17 C -0.374 4.374 18 H 0.088 0.912 19 C -0.207 4.207 20 N -0.581 5.581 21 Si 0.737 3.263 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.120 4.120 26 H 0.106 0.894 27 C -0.198 4.198 28 C -0.011 4.011 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.102 0.898 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.106 0.894 35 H 0.098 0.902 36 H 0.040 0.960 37 H 0.042 0.958 38 H 0.217 0.783 39 H 0.066 0.934 40 H 0.073 0.927 41 H 0.082 0.918 42 H 0.073 0.927 43 H 0.083 0.917 44 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.590 -16.027 -4.688 17.318 hybrid contribution -0.550 1.093 -0.070 1.226 sum 4.040 -14.934 -4.758 16.186 Atomic orbital electron populations 1.22162 0.91368 1.03580 1.04829 1.21232 0.99125 1.01515 0.91518 0.86937 1.22684 1.05910 1.00452 0.89427 1.20547 0.74797 0.78850 0.85907 1.93216 1.88602 1.38305 1.95968 1.93186 1.84659 1.83832 1.54992 1.93151 1.30223 1.96446 1.96249 1.19822 0.78596 0.85175 0.83082 1.90692 1.45419 1.20545 1.86097 1.48793 1.53707 1.25926 1.06489 1.22730 0.95691 0.83640 0.99685 1.22524 0.98600 0.95135 0.95976 0.89694 1.20634 0.95108 0.87455 0.93173 1.42345 1.65505 1.17789 1.12051 1.19159 1.26101 0.96618 0.95538 0.91235 1.24720 1.01402 0.98562 0.95974 1.69628 1.50966 1.30150 1.07344 0.86288 0.80017 0.81922 0.78060 1.21269 1.21671 1.21250 1.22109 0.97785 0.93867 0.98259 0.89416 1.21826 0.94632 1.01812 1.01561 1.22120 0.99417 0.96417 0.83113 0.91655 0.90789 0.89777 0.86688 0.86444 0.89399 0.90169 0.96021 0.95810 0.78309 0.93384 0.92654 0.91846 0.92726 0.91697 0.90672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.26 37.16 0.31 -1.42 16 2 C -0.11 -1.26 1.88 -91.77 -0.17 -1.43 16 3 H 0.11 1.27 6.93 -51.93 -0.36 0.91 16 4 C -0.15 -1.45 4.14 -26.74 -0.11 -1.56 16 5 C 0.45 4.82 3.12 37.15 0.12 4.94 16 6 F -0.18 -2.18 16.48 2.25 0.04 -2.14 16 7 F -0.19 -2.03 17.32 2.25 0.04 -1.99 16 8 F -0.18 -1.99 14.30 2.25 0.03 -1.95 16 9 C 0.54 7.27 7.13 -10.99 -0.08 7.19 16 10 O -0.55 -8.67 16.43 5.56 0.09 -8.58 16 11 N -0.62 -7.92 3.29 -169.98 -0.56 -8.48 16 12 C 0.10 1.40 4.93 -2.32 -0.01 1.39 16 13 C -0.10 -1.45 2.60 -88.93 -0.23 -1.68 16 14 H 0.08 1.29 7.86 -51.93 -0.41 0.89 16 15 C 0.16 2.94 5.58 -4.04 -0.02 2.92 16 16 N -0.73 -17.14 5.52 -59.91 -0.33 -17.47 16 17 C -0.24 -6.48 9.99 -15.06 -0.15 -6.63 16 18 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 19 C -0.01 -0.29 5.50 -17.43 -0.10 -0.38 16 20 N -0.93 -27.14 13.06 55.49 0.72 -26.42 16 21 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 C -0.10 -1.15 3.17 -89.24 -0.28 -1.43 16 26 H 0.09 0.94 7.85 -51.93 -0.41 0.53 16 27 C -0.14 -1.47 8.90 37.16 0.33 -1.14 16 28 C 0.11 1.31 6.61 -2.98 -0.02 1.29 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.82 6.31 -51.93 -0.33 0.50 16 31 H 0.08 0.90 5.86 -51.93 -0.30 0.59 16 32 H 0.11 1.09 8.10 -51.92 -0.42 0.67 16 33 H 0.12 1.08 8.13 -51.93 -0.42 0.66 16 34 H 0.09 1.23 6.58 -51.93 -0.34 0.89 16 35 H 0.08 1.08 7.94 -51.93 -0.41 0.67 16 36 H 0.02 0.39 8.00 -51.93 -0.42 -0.02 16 37 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.38 9.40 7.67 -40.82 -0.31 9.08 16 39 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 40 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.90 7.65 -51.93 -0.40 0.50 16 LS Contribution 362.96 15.07 5.47 5.47 Total: -1.00 -30.38 362.96 -6.55 -36.93 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -6.61 Total: 5.87 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: -0.42 Total: 2.05 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.17 Total: -52.37 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.09 Total: -8.58 kcal Atomic # 9 Polarization: -6.19 SS G_CDS: 0.11 Total: -6.08 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.38 -6.55 -36.93 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106467416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -154.603 kcal (2) G-P(sol) polarization free energy of solvation -30.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -184.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds