Wall clock time and date at job start Tue Mar 31 2020 16:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08999 * 109.46888 * 2 1 4 4 C 1.52993 * 109.47047 * 239.99909 * 2 1 3 5 5 C 1.52992 * 109.47315 * 65.57272 * 4 2 1 6 6 F 1.39896 * 109.47324 * 54.43098 * 5 4 2 7 7 F 1.39902 * 109.47290 * 174.43222 * 5 4 2 8 8 F 1.39905 * 109.47203 * 294.43103 * 5 4 2 9 9 C 1.50698 * 109.46638 * 119.99726 * 2 1 3 10 10 O 1.21280 * 119.99935 * 109.06032 * 9 2 1 11 11 N 1.34773 * 120.00205 * 289.05329 * 9 2 1 12 12 C 1.48113 * 127.03478 * 5.67396 * 11 9 2 13 13 C 1.54597 * 103.42557 * 219.28448 * 12 11 9 14 14 H 1.09005 * 110.57806 * 81.16274 * 13 12 11 15 15 C 1.52998 * 110.99090 * 204.37307 * 13 12 11 16 16 N 1.46498 * 109.47165 * 288.64801 * 15 13 12 17 17 C 1.36937 * 120.00167 * 179.97438 * 16 15 13 18 18 H 1.07997 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38816 * 119.99824 * 180.02562 * 17 16 15 20 20 N 1.31616 * 120.00371 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99705 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47153 * 60.00188 * 21 19 17 23 23 H 1.48507 * 109.47014 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47310 * 300.00139 * 21 19 17 25 25 C 1.54624 * 102.91034 * 322.86767 * 13 12 11 26 26 H 1.09004 * 110.32331 * 262.80593 * 25 13 12 27 27 C 1.53002 * 110.41495 * 140.63565 * 25 13 12 28 28 C 1.47491 * 127.03233 * 185.98556 * 11 9 2 29 29 H 1.08999 * 109.46623 * 174.43741 * 1 2 3 30 30 H 1.08998 * 109.47141 * 294.44012 * 1 2 3 31 31 H 1.08996 * 109.46971 * 54.44310 * 1 2 3 32 32 H 1.09008 * 109.46794 * 185.57191 * 4 2 1 33 33 H 1.09002 * 109.47596 * 305.56779 * 4 2 1 34 34 H 1.09002 * 110.66034 * 337.76634 * 12 11 9 35 35 H 1.08998 * 110.66629 * 100.88681 * 12 11 9 36 36 H 1.08996 * 109.47249 * 48.64949 * 15 13 12 37 37 H 1.09005 * 109.47263 * 168.64998 * 15 13 12 38 38 H 0.97011 * 119.99819 * 0.02562 * 16 15 13 39 39 H 0.96992 * 120.00622 * 180.02562 * 20 19 17 40 40 H 1.09000 * 109.46508 * 302.87352 * 27 25 13 41 41 H 1.09000 * 109.47230 * 62.87303 * 27 25 13 42 42 H 1.09002 * 109.46665 * 182.87548 * 27 25 13 43 43 H 1.09003 * 109.91062 * 273.87344 * 28 11 9 44 44 H 1.08996 * 109.91768 * 35.15962 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 1.6477 0.0762 -2.4945 6 9 2.1082 1.3914 -2.3703 7 9 2.2211 -0.5138 -3.6260 8 9 0.2548 0.0804 -2.6259 9 6 2.0323 -0.7104 1.2305 10 8 2.5578 -1.7988 1.1303 11 7 1.8976 -0.1361 2.4423 12 6 1.1837 1.1225 2.7587 13 6 2.0910 1.7940 3.8150 14 1 2.9213 2.3112 3.3339 15 6 1.2900 2.7583 4.6922 16 7 0.9225 3.9404 3.9088 17 6 0.1969 4.9471 4.4878 18 1 -0.1041 4.8698 5.5221 19 6 -0.1517 6.0670 3.7453 20 7 0.2147 6.1611 2.4847 21 14 -1.1409 7.4405 4.5354 22 1 -0.3856 7.9949 5.6877 23 1 -1.3815 8.5141 3.5380 24 1 -2.4424 6.9043 5.0086 25 6 2.6013 0.5937 4.6455 26 1 1.9990 0.4730 5.5460 27 6 4.0736 0.7870 5.0139 28 6 2.4365 -0.6290 3.7237 29 1 -0.3632 -1.0228 -0.0996 30 1 -0.3633 0.4252 0.9356 31 1 -0.3633 0.5976 -0.8360 32 1 3.1256 -0.8084 -1.2006 33 1 1.5976 -1.7161 -1.3005 34 1 1.0985 1.7498 1.8714 35 1 0.1999 0.9117 3.1780 36 1 0.3865 2.2620 5.0465 37 1 1.8962 3.0621 5.5457 38 1 1.1926 4.0097 2.9796 39 1 -0.0286 6.9437 1.9660 40 1 4.6612 0.9183 4.1053 41 1 4.1775 1.6699 5.6446 42 1 4.4310 -0.0897 5.5542 43 1 1.7407 -1.3394 4.1703 44 1 3.4037 -1.1046 3.5614 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106467416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:49 Heat of formation + Delta-G solvation = -208.924529 kcal Electronic energy + Delta-G solvation = -28544.414533 eV Core-core repulsion = 24080.696463 eV Total energy + Delta-G solvation = -4463.718070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -51.15451 -48.64689 -48.61041 -41.45293 -39.33974 -36.39179 -36.05223 -34.14158 -33.10092 -30.58578 -30.19783 -27.67289 -27.02982 -25.72745 -24.87074 -23.44778 -22.28072 -21.03489 -20.38610 -19.59157 -19.42675 -19.03004 -18.68011 -17.51011 -17.19710 -16.72069 -16.49477 -15.94041 -15.60350 -15.48052 -15.44584 -15.20044 -15.10497 -14.92512 -14.85187 -14.78484 -14.70373 -14.32355 -14.11164 -13.88251 -13.64304 -13.33699 -13.12552 -13.08454 -12.90034 -12.71865 -12.66496 -12.42658 -12.41860 -12.29377 -12.15243 -11.91734 -11.72904 -11.50752 -11.42292 -10.93942 -10.84180 -9.76861 -8.94182 -7.90661 -5.18391 1.44940 1.51445 1.52856 1.58977 1.60765 1.96873 2.59763 2.78818 2.93132 3.05547 3.34018 3.43420 3.53564 3.61062 3.75666 3.80762 3.86442 4.10898 4.18489 4.26519 4.40460 4.44657 4.54109 4.56404 4.56954 4.70364 4.73243 4.82029 4.84904 4.87462 4.89568 5.03611 5.07259 5.18041 5.22858 5.28645 5.33613 5.52117 5.56463 6.31555 6.41660 6.97859 7.39144 8.14865 8.37428 9.32370 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.010419 B = 0.003858 C = 0.002992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.692958 B = 7256.028783 C = 9357.393288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.110 4.110 3 H 0.109 0.891 4 C -0.139 4.139 5 C 0.456 3.544 6 F -0.189 7.189 7 F -0.186 7.186 8 F -0.181 7.181 9 C 0.544 3.456 10 O -0.573 6.573 11 N -0.616 5.616 12 C 0.111 3.889 13 C -0.096 4.096 14 H 0.072 0.928 15 C 0.166 3.834 16 N -0.744 5.744 17 C -0.243 4.243 18 H 0.076 0.924 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.966 3.034 22 H -0.280 1.280 23 H -0.298 1.298 24 H -0.278 1.278 25 C -0.090 4.090 26 H 0.101 0.899 27 C -0.138 4.138 28 C 0.110 3.890 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.030 0.970 37 H 0.025 0.975 38 H 0.375 0.625 39 H 0.250 0.750 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.074 0.926 43 H 0.077 0.923 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.299 -16.539 -3.594 17.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.131 4.131 3 H 0.127 0.873 4 C -0.178 4.178 5 C 0.402 3.598 6 F -0.171 7.171 7 F -0.167 7.167 8 F -0.163 7.163 9 C 0.334 3.666 10 O -0.453 6.453 11 N -0.348 5.348 12 C -0.011 4.011 13 C -0.116 4.116 14 H 0.091 0.909 15 C 0.039 3.961 16 N -0.387 5.387 17 C -0.375 4.375 18 H 0.094 0.906 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.796 3.204 22 H -0.206 1.206 23 H -0.225 1.225 24 H -0.204 1.204 25 C -0.109 4.109 26 H 0.119 0.881 27 C -0.196 4.196 28 C -0.012 4.012 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.139 0.861 33 H 0.146 0.854 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.047 0.953 37 H 0.043 0.957 38 H 0.207 0.793 39 H 0.059 0.941 40 H 0.066 0.934 41 H 0.077 0.923 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 4.485 -17.072 -3.611 18.017 hybrid contribution -0.491 1.353 -0.343 1.480 sum 3.994 -15.718 -3.955 16.693 Atomic orbital electron populations 1.22136 0.90889 1.04096 1.04452 1.21216 0.99462 1.01214 0.91253 0.87275 1.22655 1.06304 1.00517 0.88291 1.20606 0.74610 0.78425 0.86118 1.93199 1.88727 1.39156 1.96023 1.93184 1.84664 1.83765 1.55096 1.93147 1.30423 1.96424 1.96278 1.20095 0.78090 0.84875 0.83555 1.90679 1.46599 1.21603 1.86436 1.48815 1.53435 1.25544 1.06963 1.22595 0.95648 0.83730 0.99130 1.22355 0.97814 0.95341 0.96048 0.90921 1.20758 0.95737 0.86381 0.93229 1.42544 1.65161 1.18858 1.12098 1.19569 1.25100 0.97108 0.95753 0.90648 1.25448 1.03246 1.01005 0.96550 1.69777 1.52807 1.30552 1.08642 0.85320 0.78950 0.79093 0.77046 1.20619 1.22489 1.20423 1.22070 0.98594 0.92091 0.98169 0.88058 1.21807 0.93773 1.02584 1.01396 1.22229 0.99754 0.96620 0.82558 0.90737 0.91426 0.89806 0.86148 0.85406 0.90299 0.89905 0.95251 0.95687 0.79324 0.94106 0.93362 0.92260 0.90698 0.90458 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.26 71.99 0.59 -2.65 16 2 C -0.11 -2.39 1.88 -11.54 -0.02 -2.41 16 3 H 0.11 2.45 6.93 -2.39 -0.02 2.43 16 4 C -0.14 -2.62 4.14 30.59 0.13 -2.49 16 5 C 0.46 9.36 3.12 71.98 0.22 9.59 16 6 F -0.19 -4.54 16.48 44.97 0.74 -3.80 16 7 F -0.19 -3.89 17.32 44.97 0.78 -3.11 16 8 F -0.18 -3.86 14.30 44.97 0.64 -3.22 16 9 C 0.54 13.95 7.13 87.66 0.63 14.57 16 10 O -0.57 -17.37 16.43 -3.03 -0.05 -17.42 16 11 N -0.62 -15.04 3.29 -810.08 -2.67 -17.71 16 12 C 0.11 2.89 4.93 86.61 0.43 3.32 16 13 C -0.10 -2.61 2.60 -9.70 -0.03 -2.64 16 14 H 0.07 2.19 7.86 -2.38 -0.02 2.17 16 15 C 0.17 5.74 5.58 86.38 0.48 6.23 16 16 N -0.74 -34.62 5.52 -343.46 -1.90 -36.52 16 17 C -0.24 -12.84 9.99 84.03 0.84 -12.00 16 18 H 0.08 3.81 7.83 -2.91 -0.02 3.79 16 19 C -0.07 -3.85 5.50 84.86 0.47 -3.39 16 20 N -0.97 -56.97 13.06 21.65 0.28 -56.69 16 21 Si 0.97 44.58 29.55 68.60 2.03 46.60 16 22 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 23 H -0.30 -14.02 7.11 99.48 0.71 -13.32 16 24 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 25 C -0.09 -1.86 3.17 -9.90 -0.03 -1.89 16 26 H 0.10 1.87 7.85 -2.38 -0.02 1.85 16 27 C -0.14 -2.61 8.90 71.98 0.64 -1.97 16 28 C 0.11 2.35 6.61 86.53 0.57 2.93 16 29 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.46 6.31 -2.39 -0.02 1.45 16 31 H 0.08 1.73 5.86 -2.39 -0.01 1.72 16 32 H 0.12 2.16 8.10 -2.38 -0.02 2.14 16 33 H 0.13 2.16 8.13 -2.39 -0.02 2.14 16 34 H 0.08 2.21 6.58 -2.39 -0.02 2.19 16 35 H 0.08 2.13 7.94 -2.39 -0.02 2.11 16 36 H 0.03 1.00 8.00 -2.39 -0.02 0.98 16 37 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.37 18.58 7.67 -92.70 -0.71 17.87 16 39 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 40 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 44 H 0.08 1.64 7.65 -2.39 -0.02 1.62 16 Total: -1.00 -63.42 362.96 5.09 -58.33 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: 0.31 Total: 26.32 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 4.92 Total: 7.20 kcal Atomic # 7 Polarization: -106.63 SS G_CDS: -4.28 Total: -110.91 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -0.05 Total: -17.42 kcal Atomic # 9 Polarization: -12.29 SS G_CDS: 2.16 Total: -10.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.60 kcal Total: -63.42 5.09 -58.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106467416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.590 kcal (2) G-P(sol) polarization free energy of solvation -63.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds