Wall clock time and date at job start Tue Mar 31 2020 16:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47147 * 2 1 4 4 C 1.53001 * 109.46779 * 240.00372 * 2 1 3 5 5 C 1.50708 * 109.47176 * 64.99765 * 4 2 1 6 6 O 1.21277 * 119.99454 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99859 * 179.97438 * 5 4 2 8 8 C 1.47485 * 127.02912 * 180.02562 * 7 5 4 9 9 C 1.54005 * 107.24392 * 154.61510 * 8 7 5 10 10 H 1.08993 * 110.32614 * 120.10270 * 9 8 7 11 11 C 1.53007 * 110.32382 * 242.21213 * 9 8 7 12 12 N 1.46501 * 109.47256 * 293.54693 * 11 9 8 13 13 C 1.36935 * 119.99918 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.38808 * 119.99628 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00465 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99563 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47427 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47323 * 120.00019 * 17 15 13 20 20 H 1.48502 * 109.47292 * 240.00046 * 17 15 13 21 21 C 1.54616 * 105.04550 * 1.20635 * 9 8 7 22 22 H 1.09002 * 110.74101 * 263.51575 * 21 9 8 23 23 C 1.52993 * 110.73834 * 140.36811 * 21 9 8 24 24 C 1.48377 * 127.17363 * 359.79658 * 7 5 4 25 25 C 1.52998 * 109.47274 * 120.00326 * 2 1 3 26 26 F 1.39899 * 109.46920 * 179.97438 * 25 2 1 27 27 F 1.39895 * 109.47243 * 300.00107 * 25 2 1 28 28 F 1.39901 * 109.47026 * 59.99937 * 25 2 1 29 29 H 1.09005 * 109.46731 * 299.99429 * 1 2 3 30 30 H 1.08993 * 109.47276 * 59.99394 * 1 2 3 31 31 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47115 * 305.00187 * 4 2 1 33 33 H 1.08999 * 109.47014 * 184.99775 * 4 2 1 34 34 H 1.09002 * 109.91598 * 35.15596 * 8 7 5 35 35 H 1.08999 * 109.91369 * 274.06677 * 8 7 5 36 36 H 1.09006 * 109.46814 * 53.54773 * 11 9 8 37 37 H 1.09000 * 109.46968 * 173.54218 * 11 9 8 38 38 H 0.97000 * 119.99484 * 359.97438 * 12 11 9 39 39 H 0.96998 * 120.00624 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.47557 * 60.00239 * 23 21 9 41 41 H 1.09005 * 109.47215 * 179.97438 * 23 21 9 42 42 H 1.09003 * 109.47318 * 300.00145 * 23 21 9 43 43 H 1.09005 * 110.51886 * 100.79140 * 24 7 5 44 44 H 1.09006 * 110.83140 * 337.82857 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4767 6 8 1.0116 1.0875 -2.3631 7 7 1.9851 -0.3912 -3.7002 8 6 1.6790 0.2419 -4.9966 9 6 2.7559 -0.2202 -5.9960 10 1 2.2959 -0.7494 -6.8304 11 6 3.5577 0.9792 -6.5055 12 7 2.6875 1.8435 -7.3069 13 6 3.1892 2.9857 -7.8714 14 1 4.2264 3.2492 -7.7262 15 6 2.3648 3.8043 -8.6310 16 7 1.1012 3.4824 -8.8092 17 14 3.0494 5.3622 -9.4017 18 1 4.4869 5.4960 -9.0541 19 1 2.9010 5.2909 -10.8776 20 1 2.3043 6.5385 -8.8856 21 6 3.6671 -1.1753 -5.1909 22 1 4.5439 -0.6475 -4.8158 23 6 4.0832 -2.3748 -6.0446 24 6 2.7529 -1.6195 -4.0218 25 6 2.0401 -0.7213 1.2492 26 9 3.4391 -0.7218 1.2488 27 9 1.5738 -0.0619 2.3915 28 9 1.5737 -2.0403 1.2491 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 3.1263 -0.7994 -1.2057 34 1 1.7072 1.3269 -4.8958 35 1 0.6939 -0.0734 -5.3404 36 1 3.9478 1.5422 -5.6575 37 1 4.3863 0.6275 -7.1202 38 1 1.7562 1.6061 -7.4381 39 1 0.5250 4.0546 -9.3397 40 1 4.6277 -2.0252 -6.9218 41 1 4.7242 -3.0332 -5.4582 42 1 3.1946 -2.9205 -6.3622 43 1 2.0817 -2.4172 -4.3402 44 1 3.3494 -1.9387 -3.1671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106619933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:45 Heat of formation + Delta-G solvation = -192.094147 kcal Electronic energy + Delta-G solvation = -28098.562469 eV Core-core repulsion = 23635.574218 eV Total energy + Delta-G solvation = -4462.988250 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -50.39195 -47.86765 -47.85432 -40.27008 -38.27844 -35.22030 -34.67035 -32.92933 -31.44653 -29.61288 -28.14989 -26.58413 -26.36293 -25.22215 -23.29225 -21.81218 -21.16075 -19.86909 -19.37920 -18.77103 -18.50817 -17.90980 -17.15408 -16.39887 -16.34593 -15.54083 -15.29700 -14.78717 -14.75582 -14.46997 -14.29476 -14.16941 -14.03494 -13.99337 -13.77606 -13.52981 -13.50690 -13.20749 -13.13883 -12.84179 -12.65016 -12.30166 -11.99869 -11.88521 -11.65008 -11.63079 -11.54295 -11.44182 -11.10267 -10.89332 -10.64796 -10.52582 -10.33409 -9.97998 -9.83385 -9.67253 -8.89231 -8.64062 -6.93309 -5.76657 -3.05687 2.39495 2.55404 2.89797 3.43916 3.49514 3.51742 3.51788 3.71117 3.77542 4.29207 4.45378 4.47725 4.52774 4.59550 4.79413 4.84446 4.96534 5.14762 5.17603 5.29349 5.31411 5.42504 5.47904 5.51142 5.58248 5.62154 5.67929 5.74422 5.93716 6.01864 6.04501 6.11767 6.15641 6.23204 6.38788 6.43134 6.69636 6.83506 7.53155 7.70425 8.10429 8.41810 9.53304 10.09732 10.44243 11.46179 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002787 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.086792 B =10044.713729 C =10973.181682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.119 4.119 3 H 0.124 0.876 4 C -0.139 4.139 5 C 0.535 3.465 6 O -0.532 6.532 7 N -0.618 5.618 8 C 0.111 3.889 9 C -0.103 4.103 10 H 0.087 0.913 11 C 0.163 3.837 12 N -0.733 5.733 13 C -0.240 4.240 14 H 0.070 0.930 15 C -0.013 4.013 16 N -0.932 5.932 17 Si 0.906 3.094 18 H -0.280 1.280 19 H -0.292 1.292 20 H -0.291 1.291 21 C -0.100 4.100 22 H 0.085 0.915 23 C -0.140 4.140 24 C 0.101 3.899 25 C 0.454 3.546 26 F -0.184 7.184 27 F -0.181 7.181 28 F -0.183 7.183 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.019 0.981 37 H 0.022 0.978 38 H 0.384 0.616 39 H 0.255 0.745 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.075 0.925 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.623 -16.057 18.103 24.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.138 4.138 3 H 0.142 0.858 4 C -0.179 4.179 5 C 0.323 3.677 6 O -0.409 6.409 7 N -0.351 5.351 8 C -0.011 4.011 9 C -0.122 4.122 10 H 0.105 0.895 11 C 0.035 3.965 12 N -0.377 5.377 13 C -0.371 4.371 14 H 0.088 0.912 15 C -0.209 4.209 16 N -0.581 5.581 17 Si 0.738 3.262 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C -0.120 4.120 22 H 0.103 0.897 23 C -0.197 4.197 24 C -0.022 4.022 25 C 0.400 3.600 26 F -0.166 7.166 27 F -0.163 7.163 28 F -0.165 7.165 29 H 0.087 0.913 30 H 0.118 0.882 31 H 0.082 0.918 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.110 0.890 35 H 0.083 0.917 36 H 0.037 0.963 37 H 0.040 0.960 38 H 0.217 0.783 39 H 0.065 0.935 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.094 0.906 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.373 -15.344 18.244 23.956 hybrid contribution 0.205 0.620 -0.323 0.729 sum 2.578 -14.724 17.921 23.336 Atomic orbital electron populations 1.22013 0.90813 1.03356 1.05434 1.22186 1.00465 1.01820 0.89366 0.85783 1.21676 1.03801 1.00637 0.91753 1.19742 0.79697 0.85330 0.82922 1.90729 1.40229 1.24329 1.85655 1.48859 1.55150 1.25339 1.05778 1.22192 0.97839 1.00232 0.80811 1.22392 0.95637 0.97136 0.97050 0.89490 1.20695 0.92860 0.89176 0.93756 1.42370 1.10227 1.24981 1.60114 1.19246 0.94980 0.98600 1.24275 0.91183 1.24737 0.95786 0.99294 1.01091 1.69658 1.04671 1.39168 1.44566 0.86125 0.77954 0.83369 0.78786 1.20573 1.21871 1.21838 1.22277 0.98058 0.96657 0.94999 0.89708 1.21731 1.01453 0.96734 0.99832 1.22728 0.93954 0.87323 0.98183 1.20648 0.75373 0.77664 0.86349 1.93183 1.30141 1.96422 1.96814 1.93180 1.88455 1.80739 1.53896 1.93166 1.88455 1.38020 1.96840 0.91340 0.88177 0.91834 0.87703 0.87734 0.89027 0.91697 0.96314 0.96029 0.78254 0.93539 0.91703 0.92649 0.92388 0.90644 0.90391 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 8.69 37.16 0.32 -1.17 16 2 C -0.12 -1.10 2.01 -90.62 -0.18 -1.29 16 3 H 0.12 1.23 7.95 -51.93 -0.41 0.81 16 4 C -0.14 -1.25 3.88 -27.88 -0.11 -1.36 16 5 C 0.53 7.06 7.61 -10.98 -0.08 6.97 16 6 O -0.53 -9.06 14.30 5.56 0.08 -8.98 16 7 N -0.62 -7.97 3.30 -169.56 -0.56 -8.53 16 8 C 0.11 1.75 6.30 -2.98 -0.02 1.73 16 9 C -0.10 -1.51 2.64 -89.24 -0.24 -1.75 16 10 H 0.09 1.29 7.85 -51.93 -0.41 0.88 16 11 C 0.16 3.15 5.35 -4.04 -0.02 3.13 16 12 N -0.73 -18.25 5.33 -59.90 -0.32 -18.57 16 13 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 14 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 15 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 16 N -0.93 -28.23 13.06 55.49 0.72 -27.50 16 17 Si 0.91 22.55 29.55 -169.99 -5.02 17.53 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 19 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 20 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 21 C -0.10 -1.08 3.20 -88.77 -0.28 -1.37 16 22 H 0.08 0.95 7.87 -51.93 -0.41 0.54 16 23 C -0.14 -1.25 9.17 37.15 0.34 -0.91 16 24 C 0.10 0.94 6.40 -2.00 -0.01 0.93 16 25 C 0.45 4.16 2.69 37.16 0.10 4.26 16 26 F -0.18 -1.77 16.71 2.25 0.04 -1.74 16 27 F -0.18 -1.81 16.80 2.25 0.04 -1.77 16 28 F -0.18 -1.68 16.37 2.25 0.04 -1.65 16 29 H 0.07 0.59 7.80 -51.93 -0.41 0.19 16 30 H 0.10 1.17 5.95 -51.93 -0.31 0.86 16 31 H 0.06 0.52 7.80 -51.93 -0.41 0.12 16 32 H 0.10 0.75 7.94 -51.93 -0.41 0.34 16 33 H 0.10 0.80 7.44 -51.93 -0.39 0.41 16 34 H 0.09 1.81 7.48 -51.93 -0.39 1.42 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.38 10.01 7.51 -40.82 -0.31 9.70 16 39 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.06 0.49 8.11 -51.93 -0.42 0.07 16 43 H 0.08 0.62 8.03 -51.93 -0.42 0.20 16 44 H 0.08 0.55 7.27 -51.93 -0.38 0.17 16 LS Contribution 366.04 15.07 5.52 5.52 Total: -1.00 -32.25 366.04 -6.62 -38.87 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.72 Total: 4.96 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -0.43 Total: 1.85 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.15 Total: -54.59 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.08 Total: -8.98 kcal Atomic # 9 Polarization: -5.27 SS G_CDS: 0.11 Total: -5.16 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.25 -6.62 -38.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106619933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.225 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds