Wall clock time and date at job start Tue Mar 31 2020 16:26:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.47147 * 2 1 4 4 C 1.53001 * 109.46779 * 240.00372 * 2 1 3 5 5 C 1.50708 * 109.47176 * 64.99765 * 4 2 1 6 6 O 1.21277 * 119.99454 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99859 * 179.97438 * 5 4 2 8 8 C 1.47485 * 127.02912 * 180.02562 * 7 5 4 9 9 C 1.54005 * 107.24392 * 154.61510 * 8 7 5 10 10 H 1.08993 * 110.32614 * 120.10270 * 9 8 7 11 11 C 1.53007 * 110.32382 * 242.21213 * 9 8 7 12 12 N 1.46501 * 109.47256 * 293.54693 * 11 9 8 13 13 C 1.36935 * 119.99918 * 180.02562 * 12 11 9 14 14 H 1.07998 * 119.99831 * 0.02562 * 13 12 11 15 15 C 1.38808 * 119.99628 * 179.97438 * 13 12 11 16 16 N 1.31612 * 120.00465 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 119.99563 * 180.02562 * 15 13 12 18 18 H 1.48497 * 109.47427 * 359.97438 * 17 15 13 19 19 H 1.48505 * 109.47323 * 120.00019 * 17 15 13 20 20 H 1.48502 * 109.47292 * 240.00046 * 17 15 13 21 21 C 1.54616 * 105.04550 * 1.20635 * 9 8 7 22 22 H 1.09002 * 110.74101 * 263.51575 * 21 9 8 23 23 C 1.52993 * 110.73834 * 140.36811 * 21 9 8 24 24 C 1.48377 * 127.17363 * 359.79658 * 7 5 4 25 25 C 1.52998 * 109.47274 * 120.00326 * 2 1 3 26 26 F 1.39899 * 109.46920 * 179.97438 * 25 2 1 27 27 F 1.39895 * 109.47243 * 300.00107 * 25 2 1 28 28 F 1.39901 * 109.47026 * 59.99937 * 25 2 1 29 29 H 1.09005 * 109.46731 * 299.99429 * 1 2 3 30 30 H 1.08993 * 109.47276 * 59.99394 * 1 2 3 31 31 H 1.08997 * 109.47147 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47115 * 305.00187 * 4 2 1 33 33 H 1.08999 * 109.47014 * 184.99775 * 4 2 1 34 34 H 1.09002 * 109.91598 * 35.15596 * 8 7 5 35 35 H 1.08999 * 109.91369 * 274.06677 * 8 7 5 36 36 H 1.09006 * 109.46814 * 53.54773 * 11 9 8 37 37 H 1.09000 * 109.46968 * 173.54218 * 11 9 8 38 38 H 0.97000 * 119.99484 * 359.97438 * 12 11 9 39 39 H 0.96998 * 120.00624 * 179.97438 * 16 15 13 40 40 H 1.09003 * 109.47557 * 60.00239 * 23 21 9 41 41 H 1.09005 * 109.47215 * 179.97438 * 23 21 9 42 42 H 1.09003 * 109.47318 * 300.00145 * 23 21 9 43 43 H 1.09005 * 110.51886 * 100.79140 * 24 7 5 44 44 H 1.09006 * 110.83140 * 337.82857 * 24 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.6412 0.0572 -2.4767 6 8 1.0116 1.0875 -2.3631 7 7 1.9851 -0.3912 -3.7002 8 6 1.6790 0.2419 -4.9966 9 6 2.7559 -0.2202 -5.9960 10 1 2.2959 -0.7494 -6.8304 11 6 3.5577 0.9792 -6.5055 12 7 2.6875 1.8435 -7.3069 13 6 3.1892 2.9857 -7.8714 14 1 4.2264 3.2492 -7.7262 15 6 2.3648 3.8043 -8.6310 16 7 1.1012 3.4824 -8.8092 17 14 3.0494 5.3622 -9.4017 18 1 4.4869 5.4960 -9.0541 19 1 2.9010 5.2909 -10.8776 20 1 2.3043 6.5385 -8.8856 21 6 3.6671 -1.1753 -5.1909 22 1 4.5439 -0.6475 -4.8158 23 6 4.0832 -2.3748 -6.0446 24 6 2.7529 -1.6195 -4.0218 25 6 2.0401 -0.7213 1.2492 26 9 3.4391 -0.7218 1.2488 27 9 1.5738 -0.0619 2.3915 28 9 1.5737 -2.0403 1.2491 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6053 -1.7197 -1.2953 33 1 3.1263 -0.7994 -1.2057 34 1 1.7072 1.3269 -4.8958 35 1 0.6939 -0.0734 -5.3404 36 1 3.9478 1.5422 -5.6575 37 1 4.3863 0.6275 -7.1202 38 1 1.7562 1.6061 -7.4381 39 1 0.5250 4.0546 -9.3397 40 1 4.6277 -2.0252 -6.9218 41 1 4.7242 -3.0332 -5.4582 42 1 3.1946 -2.9205 -6.3622 43 1 2.0817 -2.4172 -4.3402 44 1 3.3494 -1.9387 -3.1671 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106619933.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:44 Heat of formation + Delta-G solvation = -212.077023 kcal Electronic energy + Delta-G solvation = -28099.428991 eV Core-core repulsion = 23635.574218 eV Total energy + Delta-G solvation = -4463.854773 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.12608 -48.61511 -48.57499 -41.31361 -39.37273 -36.47332 -36.03944 -34.19934 -33.06988 -30.95920 -29.26020 -27.38607 -27.17697 -26.71929 -25.01050 -22.82954 -22.25431 -20.98030 -20.35740 -19.55202 -19.33281 -19.11260 -18.66748 -17.46145 -17.28059 -16.71556 -16.49894 -16.21206 -15.55999 -15.51134 -15.36722 -15.20918 -15.02741 -15.00883 -14.77389 -14.72545 -14.56766 -14.32577 -14.09274 -13.97073 -13.62033 -13.32305 -13.23513 -13.03832 -12.87600 -12.78391 -12.53131 -12.40665 -12.36232 -12.28494 -12.11092 -11.96058 -11.82859 -11.47799 -11.35921 -10.98912 -10.89432 -9.72801 -9.02275 -7.97404 -5.26269 1.44988 1.46439 1.55108 1.56164 1.59344 1.98553 2.53847 2.76638 2.96490 3.04768 3.35769 3.41755 3.55966 3.63303 3.75663 3.83135 3.89710 4.16603 4.21680 4.26533 4.45234 4.47198 4.49787 4.57035 4.59712 4.68286 4.76379 4.80465 4.89693 4.92119 4.95030 5.02275 5.11376 5.23354 5.24757 5.29004 5.40073 5.46851 5.58825 6.25060 6.54407 7.08759 7.31355 8.06917 8.29697 9.26243 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.016682 B = 0.002787 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.086792 B =10044.713729 C =10973.181682 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.118 4.118 3 H 0.113 0.887 4 C -0.128 4.128 5 C 0.528 3.472 6 O -0.581 6.581 7 N -0.619 5.619 8 C 0.116 3.884 9 C -0.094 4.094 10 H 0.088 0.912 11 C 0.163 3.837 12 N -0.745 5.745 13 C -0.246 4.246 14 H 0.074 0.926 15 C -0.075 4.075 16 N -0.968 5.968 17 Si 0.973 3.027 18 H -0.266 1.266 19 H -0.290 1.290 20 H -0.295 1.295 21 C -0.092 4.092 22 H 0.082 0.918 23 C -0.135 4.135 24 C 0.103 3.897 25 C 0.463 3.537 26 F -0.184 7.184 27 F -0.187 7.187 28 F -0.179 7.179 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.133 0.867 33 H 0.127 0.873 34 H 0.041 0.959 35 H 0.060 0.940 36 H 0.007 0.993 37 H 0.029 0.971 38 H 0.374 0.626 39 H 0.251 0.749 40 H 0.051 0.949 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.097 0.903 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.235 -18.433 19.209 26.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.138 4.138 3 H 0.131 0.869 4 C -0.167 4.167 5 C 0.318 3.682 6 O -0.462 6.462 7 N -0.352 5.352 8 C -0.007 4.007 9 C -0.113 4.113 10 H 0.106 0.894 11 C 0.037 3.963 12 N -0.388 5.388 13 C -0.378 4.378 14 H 0.092 0.908 15 C -0.268 4.268 16 N -0.619 5.619 17 Si 0.802 3.198 18 H -0.190 1.190 19 H -0.217 1.217 20 H -0.223 1.223 21 C -0.112 4.112 22 H 0.101 0.899 23 C -0.192 4.192 24 C -0.019 4.019 25 C 0.409 3.591 26 F -0.166 7.166 27 F -0.168 7.168 28 F -0.161 7.161 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.097 0.903 32 H 0.151 0.849 33 H 0.145 0.855 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.025 0.975 37 H 0.046 0.954 38 H 0.206 0.794 39 H 0.060 0.940 40 H 0.070 0.930 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.115 0.885 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.042 -17.770 19.370 26.595 hybrid contribution -0.278 1.348 -0.628 1.513 sum 3.764 -16.422 18.743 25.202 Atomic orbital electron populations 1.21946 0.91068 1.03965 1.04334 1.22127 1.00293 1.01521 0.89844 0.86866 1.21694 1.05254 1.00859 0.88882 1.20558 0.78725 0.84990 0.83933 1.90716 1.42388 1.26680 1.86400 1.48966 1.55277 1.26270 1.04645 1.21883 0.98241 0.97489 0.83082 1.22268 0.95718 0.96065 0.97247 0.89356 1.20828 0.92927 0.89962 0.92579 1.42591 1.10460 1.25182 1.60558 1.19646 0.95140 0.99437 1.23541 0.90830 1.25570 0.96200 1.02644 1.02363 1.69812 1.05913 1.40403 1.45764 0.85086 0.77881 0.79242 0.77631 1.19036 1.21669 1.22263 1.22276 0.97347 0.96387 0.95152 0.89920 1.21708 1.02163 0.96066 0.99314 1.23015 0.93978 0.85968 0.98895 1.20454 0.75227 0.77600 0.85851 1.93185 1.30184 1.96429 1.96790 1.93173 1.88536 1.80925 1.54186 1.93175 1.88409 1.37703 1.96801 0.90951 0.90751 0.90338 0.84875 0.85477 0.94028 0.92175 0.97473 0.95350 0.79402 0.93986 0.93017 0.89907 0.91590 0.88488 0.86667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 8.69 71.98 0.63 -2.19 16 2 C -0.12 -2.02 2.01 -10.79 -0.02 -2.04 16 3 H 0.11 2.21 7.95 -2.39 -0.02 2.19 16 4 C -0.13 -1.95 3.88 29.85 0.12 -1.83 16 5 C 0.53 13.54 7.61 87.66 0.67 14.21 16 6 O -0.58 -20.59 14.30 -3.02 -0.04 -20.64 16 7 N -0.62 -15.25 3.30 -808.76 -2.67 -17.92 16 8 C 0.12 3.79 6.30 86.53 0.55 4.33 16 9 C -0.09 -2.73 2.64 -9.90 -0.03 -2.76 16 10 H 0.09 2.58 7.85 -2.39 -0.02 2.56 16 11 C 0.16 6.43 5.35 86.38 0.46 6.89 16 12 N -0.75 -38.33 5.33 -343.44 -1.83 -40.16 16 13 C -0.25 -14.02 9.99 84.03 0.84 -13.19 16 14 H 0.07 4.05 7.83 -2.91 -0.02 4.03 16 15 C -0.08 -4.43 5.50 84.86 0.47 -3.96 16 16 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 17 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.29 -13.83 7.11 99.48 0.71 -13.13 16 20 H -0.30 -14.38 7.11 99.48 0.71 -13.68 16 21 C -0.09 -1.75 3.20 -9.59 -0.03 -1.78 16 22 H 0.08 1.64 7.87 -2.39 -0.02 1.62 16 23 C -0.13 -1.93 9.17 71.98 0.66 -1.27 16 24 C 0.10 1.53 6.40 86.67 0.55 2.09 16 25 C 0.46 7.44 2.69 71.98 0.19 7.63 16 26 F -0.18 -3.07 16.71 44.97 0.75 -2.32 16 27 F -0.19 -3.44 16.80 44.97 0.76 -2.68 16 28 F -0.18 -2.74 16.37 44.97 0.74 -2.01 16 29 H 0.07 1.21 7.80 -2.38 -0.02 1.19 16 30 H 0.07 1.79 5.95 -2.39 -0.01 1.77 16 31 H 0.08 1.15 7.80 -2.39 -0.02 1.13 16 32 H 0.13 1.33 7.94 -2.39 -0.02 1.31 16 33 H 0.13 1.42 7.44 -2.39 -0.02 1.40 16 34 H 0.04 1.76 7.48 -2.39 -0.02 1.75 16 35 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.01 0.31 8.14 -2.38 -0.02 0.29 16 37 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.37 20.41 7.51 -92.71 -0.70 19.71 16 39 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 40 H 0.05 0.89 8.14 -2.39 -0.02 0.88 16 41 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 42 H 0.07 0.86 8.11 -2.39 -0.02 0.84 16 43 H 0.10 1.12 8.03 -2.38 -0.02 1.11 16 44 H 0.12 0.95 7.27 -2.38 -0.02 0.94 16 Total: -1.00 -73.24 366.04 5.37 -67.87 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: 0.32 Total: 22.69 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: 5.05 Total: 6.13 kcal Atomic # 7 Polarization: -113.91 SS G_CDS: -4.22 Total: -118.13 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.04 Total: -20.64 kcal Atomic # 9 Polarization: -9.25 SS G_CDS: 2.24 Total: -7.01 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Total: -73.24 5.37 -67.87 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106619933.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.209 kcal (2) G-P(sol) polarization free energy of solvation -73.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -217.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds