Wall clock time and date at job start Tue Mar 31 2020 16:26:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.66156 * 2 1 4 4 C 1.54598 * 110.99093 * 236.84214 * 2 1 3 5 5 N 1.48121 * 103.42136 * 204.37251 * 4 2 1 6 6 C 1.34784 * 127.03066 * 219.28127 * 5 4 2 7 7 O 1.21279 * 119.99673 * 179.68375 * 6 5 4 8 8 C 1.50696 * 120.00109 * 359.69336 * 6 5 4 9 9 C 1.52997 * 109.47055 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 F 1.39904 * 109.46820 * 60.00150 * 11 10 9 13 13 F 1.39895 * 109.47162 * 180.02562 * 11 10 9 14 14 F 1.39901 * 109.47234 * 300.00554 * 11 10 9 15 15 C 1.47482 * 105.93446 * 39.02739 * 5 4 2 16 16 C 1.54002 * 107.08089 * 334.77613 * 15 5 4 17 17 H 1.09005 * 110.32767 * 120.20315 * 16 15 5 18 18 C 1.52996 * 110.32576 * 242.31007 * 16 15 5 19 19 N 1.46502 * 109.47387 * 293.54924 * 18 16 15 20 20 C 1.36938 * 119.99913 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00313 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99656 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00136 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99610 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47549 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46889 * 120.00020 * 24 22 20 27 27 H 1.48494 * 109.46955 * 239.99435 * 24 22 20 28 28 H 1.08997 * 109.47160 * 296.80659 * 1 2 3 29 29 H 1.09000 * 109.47398 * 56.80949 * 1 2 3 30 30 H 1.09005 * 109.47091 * 176.80895 * 1 2 3 31 31 H 1.08997 * 110.61712 * 85.86206 * 4 2 1 32 32 H 1.09002 * 110.54610 * 322.85143 * 4 2 1 33 33 H 1.09001 * 109.47324 * 59.99162 * 8 6 5 34 34 H 1.09004 * 109.47043 * 299.99530 * 8 6 5 35 35 H 1.09001 * 109.46832 * 59.99966 * 9 8 6 36 36 H 1.08993 * 109.47194 * 299.99487 * 9 8 6 37 37 H 1.09001 * 109.46801 * 300.00272 * 10 9 8 38 38 H 1.09001 * 109.46998 * 59.99868 * 10 9 8 39 39 H 1.09000 * 109.91598 * 94.13596 * 15 5 4 40 40 H 1.09000 * 109.91063 * 215.41756 * 15 5 4 41 41 H 1.09000 * 109.47265 * 53.55108 * 18 16 15 42 42 H 1.09002 * 109.47386 * 173.54522 * 18 16 15 43 43 H 0.96996 * 119.99777 * 359.97438 * 19 18 16 44 44 H 0.96998 * 119.99585 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7895 -1.2084 5 7 3.4322 -1.2056 -0.7583 6 6 4.5594 -1.2405 -1.4964 7 8 5.6027 -1.5999 -0.9933 8 6 4.5233 -0.8328 -2.9467 9 6 5.9242 -0.9627 -3.5480 10 6 5.8875 -0.5494 -5.0207 11 6 7.2882 -0.6798 -5.6221 12 9 7.7172 -2.0076 -5.5210 13 9 7.2548 -0.3014 -6.9685 14 9 8.1736 0.1505 -4.9265 15 6 3.2903 -1.5681 0.6642 16 6 2.0775 -0.7916 1.2101 17 1 1.3221 -1.4830 1.5835 18 6 2.5153 0.1659 2.3202 19 7 2.9826 -0.6058 3.4746 20 6 3.4266 0.0417 4.5965 21 1 3.4328 1.1212 4.6303 22 6 3.8698 -0.6895 5.6901 23 7 3.8627 -2.0051 5.6488 24 14 4.4763 0.1937 7.2204 25 1 4.3827 1.6614 7.0147 26 1 3.6382 -0.1973 8.3824 27 1 5.8893 -0.1811 7.4809 28 1 -0.3633 0.4634 0.9172 29 1 -0.3634 0.5626 -0.8600 30 1 -0.3633 -1.0261 -0.0572 31 1 2.1525 -0.1480 -2.0869 32 1 1.4612 -1.6602 -1.4142 33 1 4.1891 0.2017 -3.0252 34 1 3.8335 -1.4796 -3.4889 35 1 6.2587 -1.9971 -3.4695 36 1 6.6137 -0.3157 -3.0058 37 1 5.1980 -1.1967 -5.5626 38 1 5.5527 0.4850 -5.0995 39 1 3.1179 -2.6402 0.7588 40 1 4.1895 -1.2843 1.2110 41 1 3.3237 0.7996 1.9555 42 1 1.6713 0.7885 2.6169 43 1 2.9766 -1.5752 3.4444 44 1 4.1728 -2.5159 6.4128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001106693142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:39 Heat of formation + Delta-G solvation = -198.553729 kcal Electronic energy + Delta-G solvation = -27291.167183 eV Core-core repulsion = 22827.898824 eV Total energy + Delta-G solvation = -4463.268359 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.37888 -47.89526 -47.83729 -40.14823 -38.10650 -35.25719 -34.64765 -32.87739 -31.45017 -30.26992 -28.83921 -26.45689 -25.80711 -24.33194 -23.18520 -22.03594 -21.16110 -19.85118 -19.25527 -18.84204 -18.56224 -17.82561 -17.18525 -16.61812 -16.37445 -15.81070 -15.17790 -14.79035 -14.78453 -14.58626 -14.28915 -14.20101 -14.02904 -14.00611 -13.89372 -13.56936 -13.41478 -13.03016 -12.99726 -12.84941 -12.66536 -12.42859 -12.13373 -11.94802 -11.81358 -11.70713 -11.46076 -11.23494 -11.09391 -10.88078 -10.63032 -10.51330 -10.31904 -9.96736 -9.78892 -9.65867 -8.87861 -8.58707 -6.91933 -5.75416 -3.04377 2.43852 2.66188 2.96252 3.44835 3.49501 3.50244 3.52649 3.68673 3.72459 4.28628 4.49118 4.52246 4.59881 4.65075 4.71408 4.80133 4.94725 4.98708 5.02502 5.16365 5.30861 5.35436 5.44886 5.49207 5.59417 5.62396 5.69310 5.75379 5.84382 5.97252 6.05811 6.13631 6.17225 6.26731 6.41482 6.46058 6.70949 6.85310 7.61077 7.71442 8.20816 8.43148 9.54525 10.11164 10.45616 11.47484 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.002447 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.900401 B =11440.353424 C =12708.149470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.103 3.897 5 N -0.621 5.621 6 C 0.526 3.474 7 O -0.535 6.535 8 C -0.131 4.131 9 C -0.112 4.112 10 C -0.166 4.166 11 C 0.452 3.548 12 F -0.183 7.183 13 F -0.188 7.188 14 F -0.182 7.182 15 C 0.110 3.890 16 C -0.103 4.103 17 H 0.086 0.914 18 C 0.163 3.837 19 N -0.733 5.733 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.291 1.291 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.057 0.943 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.096 0.904 34 H 0.095 0.905 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.064 0.936 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.022 0.978 43 H 0.384 0.616 44 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.813 3.176 -26.376 26.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.355 5.355 6 C 0.315 3.685 7 O -0.412 6.412 8 C -0.171 4.171 9 C -0.150 4.150 10 C -0.204 4.204 11 C 0.398 3.602 12 F -0.164 7.164 13 F -0.169 7.169 14 F -0.164 7.164 15 C -0.012 4.012 16 C -0.122 4.122 17 H 0.104 0.896 18 C 0.035 3.965 19 N -0.377 5.377 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.218 1.218 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.095 0.905 32 H 0.092 0.908 33 H 0.114 0.886 34 H 0.113 0.887 35 H 0.104 0.896 36 H 0.105 0.895 37 H 0.128 0.872 38 H 0.129 0.871 39 H 0.082 0.918 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.217 0.783 44 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.063 3.099 -26.057 26.418 hybrid contribution 0.479 0.094 0.800 0.937 sum -2.584 3.194 -25.257 25.589 Atomic orbital electron populations 1.21727 0.93827 1.02015 1.02146 1.22227 0.96039 0.99755 0.94037 0.89802 1.22578 0.83285 0.98547 0.97576 1.48866 1.08113 1.66093 1.12396 1.20145 0.82262 0.78133 0.88006 1.90764 1.29724 1.47521 1.73166 1.21548 0.98627 1.03800 0.93125 1.21362 0.97497 1.04646 0.91494 1.22910 0.91481 1.06933 0.99076 1.20592 0.89837 0.73739 0.76068 1.93200 1.91658 1.35722 1.95836 1.93184 1.96938 1.91264 1.35547 1.93205 1.71982 1.72207 1.78957 1.22181 1.00299 0.98732 0.79939 1.22387 0.96604 0.97976 0.95242 0.89561 1.20690 0.96113 0.92809 0.86862 1.42371 1.77176 1.05707 1.12435 1.19248 1.34635 0.91247 0.91939 0.91188 1.24746 1.02208 0.95477 0.98519 1.69666 1.53344 1.04144 1.30924 0.86121 0.78216 0.78567 0.83311 1.20579 1.21876 1.21833 0.91735 0.92697 0.92417 0.90479 0.90850 0.88593 0.88672 0.89579 0.89493 0.87174 0.87121 0.91816 0.89114 0.96340 0.96067 0.78253 0.93539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.23 9.17 37.15 0.34 -0.89 16 2 C -0.10 -1.09 3.19 -88.93 -0.28 -1.37 16 3 H 0.08 0.94 7.87 -51.93 -0.41 0.53 16 4 C 0.10 0.95 6.38 -2.31 -0.01 0.94 16 5 N -0.62 -8.20 3.29 -169.98 -0.56 -8.76 16 6 C 0.53 7.22 7.89 -10.98 -0.09 7.13 16 7 O -0.54 -9.97 16.32 5.56 0.09 -9.88 16 8 C -0.13 -1.05 4.63 -27.89 -0.13 -1.17 16 9 C -0.11 -0.95 4.26 -26.73 -0.11 -1.06 16 10 C -0.17 -0.92 5.26 -26.73 -0.14 -1.06 16 11 C 0.45 3.72 3.16 37.16 0.12 3.84 16 12 F -0.18 -1.79 16.80 2.25 0.04 -1.75 16 13 F -0.19 -1.60 17.32 2.25 0.04 -1.56 16 14 F -0.18 -1.82 16.80 2.25 0.04 -1.78 16 15 C 0.11 1.80 6.31 -2.98 -0.02 1.78 16 16 C -0.10 -1.54 2.64 -89.25 -0.24 -1.77 16 17 H 0.09 1.30 7.85 -51.93 -0.41 0.89 16 18 C 0.16 3.19 5.35 -4.04 -0.02 3.17 16 19 N -0.73 -18.46 5.33 -59.91 -0.32 -18.78 16 20 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 21 H 0.07 1.93 7.83 -52.49 -0.41 1.52 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.51 13.06 55.49 0.72 -27.78 16 24 Si 0.91 22.73 29.55 -169.99 -5.02 17.71 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.48 8.11 -51.93 -0.42 0.06 16 31 H 0.08 0.50 7.23 -51.93 -0.38 0.12 16 32 H 0.07 0.59 8.02 -51.93 -0.42 0.18 16 33 H 0.10 0.57 7.90 -51.93 -0.41 0.16 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.09 0.85 7.76 -51.93 -0.40 0.45 16 36 H 0.09 0.89 7.76 -51.93 -0.40 0.48 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.11 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.09 1.86 7.48 -51.93 -0.39 1.47 16 41 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 42 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.38 10.15 7.51 -40.82 -0.31 9.84 16 44 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 372.29 15.07 5.61 5.61 Total: -1.00 -34.38 372.29 -7.06 -41.44 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -6.87 Total: 3.41 kcal Atomic # 6 Polarization: 2.95 SS G_CDS: -0.83 Total: 2.11 kcal Atomic # 7 Polarization: -55.17 SS G_CDS: -0.15 Total: -55.32 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 9 Polarization: -5.20 SS G_CDS: 0.11 Total: -5.08 kcal Atomic # 14 Polarization: 22.73 SS G_CDS: -5.02 Total: 17.71 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.38 -7.06 -41.44 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106693142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.111 kcal (2) G-P(sol) polarization free energy of solvation -34.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds