Wall clock time and date at job start Tue Mar 31 2020 16:26:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08997 * 110.66156 * 2 1 4 4 C 1.54598 * 110.99093 * 236.84214 * 2 1 3 5 5 N 1.48121 * 103.42136 * 204.37251 * 4 2 1 6 6 C 1.34784 * 127.03066 * 219.28127 * 5 4 2 7 7 O 1.21279 * 119.99673 * 179.68375 * 6 5 4 8 8 C 1.50696 * 120.00109 * 359.69336 * 6 5 4 9 9 C 1.52997 * 109.47055 * 179.97438 * 8 6 5 10 10 C 1.53006 * 109.47127 * 179.97438 * 9 8 6 11 11 C 1.52997 * 109.47127 * 180.02562 * 10 9 8 12 12 F 1.39904 * 109.46820 * 60.00150 * 11 10 9 13 13 F 1.39895 * 109.47162 * 180.02562 * 11 10 9 14 14 F 1.39901 * 109.47234 * 300.00554 * 11 10 9 15 15 C 1.47482 * 105.93446 * 39.02739 * 5 4 2 16 16 C 1.54002 * 107.08089 * 334.77613 * 15 5 4 17 17 H 1.09005 * 110.32767 * 120.20315 * 16 15 5 18 18 C 1.52996 * 110.32576 * 242.31007 * 16 15 5 19 19 N 1.46502 * 109.47387 * 293.54924 * 18 16 15 20 20 C 1.36938 * 119.99913 * 180.02562 * 19 18 16 21 21 H 1.08002 * 120.00313 * 359.97438 * 20 19 18 22 22 C 1.38818 * 119.99656 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00136 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99610 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47549 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46889 * 120.00020 * 24 22 20 27 27 H 1.48494 * 109.46955 * 239.99435 * 24 22 20 28 28 H 1.08997 * 109.47160 * 296.80659 * 1 2 3 29 29 H 1.09000 * 109.47398 * 56.80949 * 1 2 3 30 30 H 1.09005 * 109.47091 * 176.80895 * 1 2 3 31 31 H 1.08997 * 110.61712 * 85.86206 * 4 2 1 32 32 H 1.09002 * 110.54610 * 322.85143 * 4 2 1 33 33 H 1.09001 * 109.47324 * 59.99162 * 8 6 5 34 34 H 1.09004 * 109.47043 * 299.99530 * 8 6 5 35 35 H 1.09001 * 109.46832 * 59.99966 * 9 8 6 36 36 H 1.08993 * 109.47194 * 299.99487 * 9 8 6 37 37 H 1.09001 * 109.46801 * 300.00272 * 10 9 8 38 38 H 1.09001 * 109.46998 * 59.99868 * 10 9 8 39 39 H 1.09000 * 109.91598 * 94.13596 * 15 5 4 40 40 H 1.09000 * 109.91063 * 215.41756 * 15 5 4 41 41 H 1.09000 * 109.47265 * 53.55108 * 18 16 15 42 42 H 1.09002 * 109.47386 * 173.54522 * 18 16 15 43 43 H 0.96996 * 119.99777 * 359.97438 * 19 18 16 44 44 H 0.96998 * 119.99585 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9145 1.0199 0.0000 4 6 2.0837 -0.7895 -1.2084 5 7 3.4322 -1.2056 -0.7583 6 6 4.5594 -1.2405 -1.4964 7 8 5.6027 -1.5999 -0.9933 8 6 4.5233 -0.8328 -2.9467 9 6 5.9242 -0.9627 -3.5480 10 6 5.8875 -0.5494 -5.0207 11 6 7.2882 -0.6798 -5.6221 12 9 7.7172 -2.0076 -5.5210 13 9 7.2548 -0.3014 -6.9685 14 9 8.1736 0.1505 -4.9265 15 6 3.2903 -1.5681 0.6642 16 6 2.0775 -0.7916 1.2101 17 1 1.3221 -1.4830 1.5835 18 6 2.5153 0.1659 2.3202 19 7 2.9826 -0.6058 3.4746 20 6 3.4266 0.0417 4.5965 21 1 3.4328 1.1212 4.6303 22 6 3.8698 -0.6895 5.6901 23 7 3.8627 -2.0051 5.6488 24 14 4.4763 0.1937 7.2204 25 1 4.3827 1.6614 7.0147 26 1 3.6382 -0.1973 8.3824 27 1 5.8893 -0.1811 7.4809 28 1 -0.3633 0.4634 0.9172 29 1 -0.3634 0.5626 -0.8600 30 1 -0.3633 -1.0261 -0.0572 31 1 2.1525 -0.1480 -2.0869 32 1 1.4612 -1.6602 -1.4142 33 1 4.1891 0.2017 -3.0252 34 1 3.8335 -1.4796 -3.4889 35 1 6.2587 -1.9971 -3.4695 36 1 6.6137 -0.3157 -3.0058 37 1 5.1980 -1.1967 -5.5626 38 1 5.5527 0.4850 -5.0995 39 1 3.1179 -2.6402 0.7588 40 1 4.1895 -1.2843 1.2110 41 1 3.3237 0.7996 1.9555 42 1 1.6713 0.7885 2.6169 43 1 2.9766 -1.5752 3.4444 44 1 4.1728 -2.5159 6.4128 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001106693142.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:26:38 Heat of formation + Delta-G solvation = -221.194910 kcal Electronic energy + Delta-G solvation = -27292.148978 eV Core-core repulsion = 22827.898824 eV Total energy + Delta-G solvation = -4464.250154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.04933 -48.55558 -48.55029 -41.21255 -39.23123 -36.45957 -35.92811 -34.16410 -33.06845 -31.25019 -30.11217 -27.36805 -27.13210 -25.51648 -24.67092 -22.79860 -22.31894 -20.97561 -20.25748 -19.50663 -19.25115 -19.19996 -18.49152 -17.67734 -17.29981 -16.77289 -16.60512 -16.13094 -15.61529 -15.47350 -15.41010 -15.23142 -15.01066 -14.95842 -14.84836 -14.70607 -14.68903 -14.10707 -13.96681 -13.75892 -13.59298 -13.24628 -13.14626 -13.03918 -12.91344 -12.78554 -12.71649 -12.49165 -12.37628 -12.11631 -11.96827 -11.84047 -11.81094 -11.46340 -11.35286 -10.99815 -10.88861 -9.70262 -9.03583 -7.98595 -5.27594 1.43764 1.45592 1.55291 1.64434 1.81083 2.04367 2.52902 2.91833 3.06554 3.14977 3.34819 3.45422 3.58144 3.76090 3.79928 3.97524 4.03118 4.19435 4.27476 4.29713 4.48793 4.49036 4.53857 4.58715 4.61258 4.68138 4.73369 4.80155 4.93152 4.96312 5.02394 5.04027 5.13734 5.22378 5.25114 5.30165 5.41423 5.45744 5.60466 6.23950 6.61906 7.17721 7.29921 8.05740 8.28214 9.25245 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014995 B = 0.002447 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1866.900401 B =11440.353424 C =12708.149470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.092 4.092 3 H 0.083 0.917 4 C 0.105 3.895 5 N -0.621 5.621 6 C 0.513 3.487 7 O -0.601 6.601 8 C -0.116 4.116 9 C -0.112 4.112 10 C -0.150 4.150 11 C 0.444 3.556 12 F -0.196 7.196 13 F -0.188 7.188 14 F -0.198 7.198 15 C 0.114 3.886 16 C -0.093 4.093 17 H 0.087 0.913 18 C 0.163 3.837 19 N -0.746 5.746 20 C -0.246 4.246 21 H 0.074 0.926 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 0.974 3.026 25 H -0.265 1.265 26 H -0.289 1.289 27 H -0.296 1.296 28 H 0.049 0.951 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.123 0.877 32 H 0.095 0.905 33 H 0.131 0.869 34 H 0.135 0.865 35 H 0.062 0.938 36 H 0.059 0.941 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.056 0.944 40 H 0.036 0.964 41 H 0.006 0.994 42 H 0.030 0.970 43 H 0.373 0.627 44 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.293 4.804 -29.113 30.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.112 4.112 3 H 0.101 0.899 4 C -0.016 4.016 5 N -0.354 5.354 6 C 0.304 3.696 7 O -0.482 6.482 8 C -0.155 4.155 9 C -0.151 4.151 10 C -0.188 4.188 11 C 0.390 3.610 12 F -0.178 7.178 13 F -0.170 7.170 14 F -0.179 7.179 15 C -0.010 4.010 16 C -0.113 4.113 17 H 0.105 0.895 18 C 0.037 3.963 19 N -0.389 5.389 20 C -0.377 4.377 21 H 0.092 0.908 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.189 1.189 26 H -0.216 1.216 27 H -0.223 1.223 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.083 0.917 31 H 0.141 0.859 32 H 0.113 0.887 33 H 0.149 0.851 34 H 0.153 0.847 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.157 0.843 39 H 0.074 0.926 40 H 0.055 0.945 41 H 0.024 0.976 42 H 0.048 0.952 43 H 0.205 0.795 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.597 4.778 -28.842 29.766 hybrid contribution 1.280 -0.398 1.620 2.103 sum -4.317 4.379 -27.223 27.909 Atomic orbital electron populations 1.21703 0.91735 1.02927 1.02823 1.22239 0.97607 0.99127 0.92247 0.89905 1.22902 0.80716 0.99921 0.98031 1.49018 1.10022 1.65561 1.10792 1.21389 0.81189 0.76774 0.90220 1.90737 1.32207 1.50403 1.74878 1.21615 0.98971 1.06478 0.88467 1.21276 0.97534 1.02796 0.93460 1.22920 0.89904 1.09376 0.96601 1.21130 0.90918 0.72886 0.76083 1.93173 1.91983 1.36760 1.95896 1.93179 1.96963 1.91200 1.35649 1.93175 1.72839 1.72600 1.79308 1.21870 0.98421 0.98489 0.82218 1.22270 0.95958 0.97478 0.95584 0.89517 1.20834 0.95513 0.93376 0.86582 1.42607 1.77256 1.05571 1.13423 1.19660 1.33577 0.91643 0.92860 0.90762 1.25603 1.03277 0.96264 1.01792 1.69825 1.54929 1.05631 1.31650 0.85065 0.77039 0.78198 0.79423 1.18945 1.21569 1.22318 0.93182 0.89640 0.91709 0.85929 0.88706 0.85080 0.84692 0.91870 0.92219 0.84071 0.84282 0.92574 0.94544 0.97587 0.95235 0.79489 0.93983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.17 71.98 0.66 -1.19 16 2 C -0.09 -1.72 3.19 -9.70 -0.03 -1.75 16 3 H 0.08 1.60 7.87 -2.39 -0.02 1.58 16 4 C 0.11 1.47 6.38 86.61 0.55 2.02 16 5 N -0.62 -15.62 3.29 -810.08 -2.67 -18.29 16 6 C 0.51 13.70 7.89 87.65 0.69 14.39 16 7 O -0.60 -23.69 16.32 -3.03 -0.05 -23.73 16 8 C -0.12 -1.42 4.63 29.85 0.14 -1.28 16 9 C -0.11 -1.73 4.26 30.60 0.13 -1.60 16 10 C -0.15 -1.17 5.26 30.60 0.16 -1.00 16 11 C 0.44 6.72 3.16 71.98 0.23 6.95 16 12 F -0.20 -3.78 16.80 44.97 0.76 -3.03 16 13 F -0.19 -2.86 17.32 44.97 0.78 -2.08 16 14 F -0.20 -3.91 16.80 44.97 0.76 -3.16 16 15 C 0.11 3.86 6.31 86.53 0.55 4.40 16 16 C -0.09 -2.79 2.64 -9.90 -0.03 -2.81 16 17 H 0.09 2.59 7.85 -2.38 -0.02 2.57 16 18 C 0.16 6.53 5.35 86.38 0.46 6.99 16 19 N -0.75 -39.05 5.33 -343.44 -1.83 -40.88 16 20 C -0.25 -14.19 9.99 84.03 0.84 -13.35 16 21 H 0.07 4.13 7.83 -2.91 -0.02 4.11 16 22 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 23 N -0.97 -61.28 13.06 21.65 0.28 -60.99 16 24 Si 0.97 47.59 29.55 68.60 2.03 49.62 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 27 H -0.30 -14.58 7.11 99.48 0.71 -13.87 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.82 8.11 -2.38 -0.02 0.80 16 31 H 0.12 0.71 7.23 -2.39 -0.02 0.69 16 32 H 0.09 1.02 8.02 -2.39 -0.02 1.00 16 33 H 0.13 0.77 7.90 -2.39 -0.02 0.75 16 34 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.06 1.25 7.76 -2.39 -0.02 1.23 16 36 H 0.06 1.24 7.76 -2.39 -0.02 1.22 16 37 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 39 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.04 1.62 7.48 -2.39 -0.02 1.60 16 41 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.37 20.79 7.51 -92.71 -0.70 20.10 16 44 H 0.25 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -82.26 372.29 5.18 -77.08 By element: Atomic # 1 Polarization: 17.50 SS G_CDS: 0.31 Total: 17.81 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: 4.82 Total: 7.66 kcal Atomic # 7 Polarization: -115.95 SS G_CDS: -4.22 Total: -120.16 kcal Atomic # 8 Polarization: -23.69 SS G_CDS: -0.05 Total: -23.73 kcal Atomic # 9 Polarization: -10.56 SS G_CDS: 2.29 Total: -8.27 kcal Atomic # 14 Polarization: 47.59 SS G_CDS: 2.03 Total: 49.62 kcal Total: -82.26 5.18 -77.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001106693142.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.115 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -226.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -221.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds