Wall clock time and date at job start Tue Mar 31 2020 16:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35898 * 117.00340 * 2 1 4 4 C 1.38792 * 120.02486 * 359.97390 * 3 2 1 5 5 C 1.38162 * 120.05603 * 179.77126 * 4 3 2 6 6 C 1.38204 * 120.10301 * 0.50873 * 5 4 3 7 7 C 1.50700 * 119.96834 * 179.76846 * 6 5 4 8 8 H 1.09001 * 109.47042 * 144.72623 * 7 6 5 9 9 C 1.52997 * 109.47132 * 264.72405 * 7 6 5 10 10 N 1.46504 * 109.47198 * 24.72222 * 7 6 5 11 11 C 1.34777 * 119.99854 * 154.99672 * 10 7 6 12 12 O 1.21593 * 119.99953 * 0.02562 * 11 10 7 13 13 N 1.34773 * 120.00097 * 180.27545 * 11 10 7 14 14 C 1.46500 * 120.00431 * 179.72742 * 13 11 10 15 15 C 1.52999 * 109.47528 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47004 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00495 * 359.97438 * 16 15 14 18 18 C 1.37880 * 119.99756 * 179.97438 * 16 15 14 19 19 N 1.31515 * 119.99887 * 179.97438 * 18 16 15 20 20 Si 1.86800 * 119.99895 * 0.02562 * 18 16 15 21 21 H 1.48500 * 109.47520 * 89.99933 * 20 18 16 22 22 H 1.48504 * 109.47004 * 209.99685 * 20 18 16 23 23 H 1.48494 * 109.47119 * 329.99385 * 20 18 16 24 24 C 1.38746 * 120.05546 * 359.48989 * 6 5 4 25 25 O 1.35901 * 120.02355 * 180.22998 * 24 6 5 26 26 C 1.42904 * 116.99616 * 180.02562 * 25 24 6 27 27 C 1.38609 * 120.03148 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47326 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.47063 * 300.00720 * 1 2 3 30 30 H 1.09000 * 109.47038 * 60.00207 * 1 2 3 31 31 H 1.08002 * 119.97731 * 0.04528 * 4 3 2 32 32 H 1.07994 * 119.94888 * 180.26032 * 5 4 3 33 33 H 1.09001 * 109.46979 * 60.00180 * 9 7 6 34 34 H 1.09000 * 109.47470 * 179.97438 * 9 7 6 35 35 H 1.08998 * 109.47338 * 300.00052 * 9 7 6 36 36 H 0.97000 * 120.00410 * 335.00397 * 10 7 6 37 37 H 0.97000 * 120.00112 * 359.73180 * 13 11 10 38 38 H 1.09009 * 109.46712 * 300.00517 * 14 13 11 39 39 H 1.08998 * 109.47207 * 59.99494 * 14 13 11 40 40 H 1.09003 * 109.46366 * 299.99640 * 15 14 13 41 41 H 1.08993 * 109.47533 * 59.99613 * 15 14 13 42 42 H 0.97000 * 119.99443 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46814 * 180.02562 * 26 25 24 44 44 H 1.09002 * 109.46982 * 300.00226 * 26 25 24 45 45 H 1.08995 * 109.47147 * 60.00346 * 26 25 24 46 46 H 1.08007 * 120.05437 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2906 2.3752 -0.0005 5 6 1.9173 3.6065 0.0042 6 6 3.2973 3.6821 -0.0011 7 6 3.9776 5.0267 -0.0011 8 1 4.8926 4.9710 0.5887 9 6 4.3205 5.4247 -1.4380 10 7 3.0808 6.0278 0.5821 11 6 3.5897 7.1398 1.1486 12 8 4.7930 7.3124 1.1753 13 7 2.7650 8.0581 1.6900 14 6 3.3184 9.2640 2.3111 15 6 2.1773 10.1328 2.8440 16 6 2.7466 11.3735 3.4823 17 1 3.8154 11.5269 3.5061 18 6 1.9029 12.3130 4.0361 19 7 2.3997 13.3956 4.5937 20 14 0.0543 12.0474 3.9957 21 1 -0.3672 11.3131 5.2157 22 1 -0.6338 13.3626 3.9472 23 1 -0.3059 11.2557 2.7922 24 6 4.0567 2.5209 -0.0005 25 8 5.4137 2.5959 -0.0010 26 6 6.1317 1.3604 -0.0009 27 6 3.4301 1.2840 -0.0005 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.2121 2.3188 -0.0002 32 1 1.3279 4.5114 0.0080 33 1 3.4055 5.4805 -2.0278 34 1 4.8122 6.3976 -1.4382 35 1 4.9877 4.6800 -1.8720 36 1 2.1208 5.8902 0.5605 37 1 1.8051 7.9205 1.6685 38 1 3.9738 8.9804 3.1347 39 1 3.8878 9.8255 1.5706 40 1 1.5217 10.4164 2.0206 41 1 1.6082 9.5711 3.5846 42 1 1.8061 14.0563 4.9836 43 1 7.2027 1.5626 -0.0008 44 1 5.8702 0.7883 0.8893 45 1 5.8697 0.7879 -0.8906 46 1 4.0197 0.3791 -0.0005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123735255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:31:29 Heat of formation + Delta-G solvation = -105.855397 kcal Electronic energy + Delta-G solvation = -26698.706309 eV Core-core repulsion = 22781.314392 eV Total energy + Delta-G solvation = -3917.391917 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.80711 -40.92572 -39.94757 -38.19724 -36.73995 -35.91691 -34.78828 -32.82777 -31.55300 -31.34916 -29.87198 -28.11600 -28.06503 -26.73665 -24.60740 -23.45286 -22.65444 -22.18696 -21.44335 -20.02374 -19.29059 -18.88751 -17.95251 -17.37741 -17.07249 -16.92241 -16.62707 -16.44355 -16.38632 -16.13683 -15.75466 -15.47159 -15.38771 -15.16184 -14.65935 -14.51559 -14.28578 -14.03275 -13.58951 -13.41048 -13.31290 -13.18023 -13.01192 -12.84241 -12.62452 -12.36740 -12.15453 -12.13827 -11.91790 -11.84108 -11.73665 -11.55893 -11.51101 -11.24884 -10.76668 -10.38232 -9.77641 -9.63590 -8.98986 -8.27741 -6.34944 0.26997 0.35559 1.40826 1.43890 1.55205 1.72784 2.17159 2.19216 2.39165 2.43922 2.64725 3.07272 3.34957 3.62651 3.73257 4.05998 4.16470 4.22816 4.29186 4.37080 4.38033 4.39854 4.42648 4.44456 4.48457 4.55996 4.58344 4.74435 4.75453 4.78328 4.78824 4.92480 5.03968 5.16817 5.24692 5.28422 5.30909 5.44521 5.47503 5.53044 5.63271 5.69630 6.05127 6.25623 6.26190 6.42998 6.72422 7.15965 7.29328 7.63033 8.89158 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.016674 B = 0.002404 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.808171 B =11645.275089 C =12893.923846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.332 6.332 3 C 0.157 3.843 4 C -0.237 4.237 5 C -0.037 4.037 6 C -0.171 4.171 7 C 0.220 3.780 8 H 0.068 0.932 9 C -0.147 4.147 10 N -0.727 5.727 11 C 0.699 3.301 12 O -0.638 6.638 13 N -0.731 5.731 14 C 0.165 3.835 15 C -0.011 4.011 16 C -0.539 4.539 17 H 0.028 0.972 18 C 0.002 3.998 19 N -0.952 5.952 20 Si 0.961 3.039 21 H -0.265 1.265 22 H -0.287 1.287 23 H -0.235 1.235 24 C 0.167 3.833 25 O -0.327 6.327 26 C 0.017 3.983 27 C -0.248 4.248 28 H 0.118 0.882 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.157 0.843 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.041 0.959 35 H 0.072 0.928 36 H 0.408 0.592 37 H 0.410 0.590 38 H 0.039 0.961 39 H 0.041 0.959 40 H 0.038 0.962 41 H 0.036 0.964 42 H 0.268 0.732 43 H 0.116 0.884 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.941 -33.093 -14.069 36.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.246 6.246 3 C 0.111 3.889 4 C -0.255 4.255 5 C -0.056 4.056 6 C -0.172 4.172 7 C 0.115 3.885 8 H 0.086 0.914 9 C -0.205 4.205 10 N -0.385 5.385 11 C 0.399 3.601 12 O -0.519 6.519 13 N -0.386 5.386 14 C 0.040 3.960 15 C -0.048 4.048 16 C -0.577 4.577 17 H 0.046 0.954 18 C -0.195 4.195 19 N -0.592 5.592 20 Si 0.784 3.216 21 H -0.190 1.190 22 H -0.213 1.213 23 H -0.158 1.158 24 C 0.121 3.879 25 O -0.240 6.240 26 C -0.077 4.077 27 C -0.267 4.267 28 H 0.136 0.864 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.174 0.826 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.246 0.754 38 H 0.057 0.943 39 H 0.059 0.941 40 H 0.057 0.943 41 H 0.054 0.946 42 H 0.076 0.924 43 H 0.134 0.866 44 H 0.082 0.918 45 H 0.088 0.912 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -5.676 -32.815 -13.959 36.110 hybrid contribution -1.050 0.330 0.402 1.172 sum -6.725 -32.485 -13.556 35.837 Atomic orbital electron populations 1.23389 0.76069 1.05679 1.02584 1.86040 1.23743 1.26624 1.88150 1.18851 0.91644 0.84964 0.93426 1.21366 1.01463 0.91205 1.11488 1.20720 0.92046 0.98478 0.94315 1.19146 0.93893 0.92098 1.12075 1.19153 0.91711 0.83110 0.94536 0.91435 1.22059 1.02254 1.01140 0.95090 1.45134 1.10644 1.19958 1.62810 1.16133 0.85010 0.80654 0.78301 1.90883 1.15376 1.79537 1.66138 1.45098 1.09952 1.21583 1.61996 1.20872 0.96472 0.83403 0.95248 1.19637 0.94868 0.93619 0.96722 1.21261 0.93920 1.04789 1.37753 0.95397 1.26110 1.05322 0.94187 0.93857 1.70085 1.37819 1.11437 1.39827 0.85505 0.77683 0.77997 0.80464 1.19031 1.21344 1.15779 1.18482 0.82892 0.92546 0.94014 1.86142 1.15085 1.34823 1.87996 1.23371 0.97424 0.84454 1.02443 1.20477 0.93294 0.97409 1.15537 0.86372 0.91567 0.91298 0.82585 0.83092 0.91001 0.93976 0.90947 0.75272 0.75365 0.94252 0.94089 0.94335 0.94572 0.92365 0.86598 0.91783 0.91158 0.83424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.11 9.81 113.37 1.11 1.23 16 2 O -0.33 -4.95 10.49 -92.40 -0.97 -5.91 16 3 C 0.16 2.61 6.68 22.49 0.15 2.76 16 4 C -0.24 -3.29 9.04 22.38 0.20 -3.08 16 5 C -0.04 -0.58 9.23 22.24 0.21 -0.37 16 6 C -0.17 -3.50 5.07 -19.75 -0.10 -3.60 16 7 C 0.22 5.51 2.51 44.24 0.11 5.62 16 8 H 0.07 2.16 7.12 -2.39 -0.02 2.14 16 9 C -0.15 -3.42 9.47 71.98 0.68 -2.74 16 10 N -0.73 -17.95 5.00 -461.40 -2.31 -20.26 16 11 C 0.70 24.13 8.53 179.06 1.53 25.66 16 12 O -0.64 -28.42 16.01 -4.01 -0.06 -28.49 16 13 N -0.73 -23.97 5.56 -478.53 -2.66 -26.63 16 14 C 0.16 6.97 5.61 86.38 0.48 7.45 16 15 C -0.01 -0.48 4.16 29.85 0.12 -0.35 16 16 C -0.54 -31.13 9.66 25.60 0.25 -30.88 16 17 H 0.03 1.81 7.99 -2.91 -0.02 1.79 16 18 C 0.00 0.12 5.47 84.66 0.46 0.58 16 19 N -0.95 -59.81 13.96 21.45 0.30 -59.52 16 20 Si 0.96 42.35 27.47 68.60 1.88 44.23 16 21 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 22 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 23 H -0.23 -9.11 6.54 99.48 0.65 -8.46 16 24 C 0.17 3.43 6.66 22.49 0.15 3.58 16 25 O -0.33 -6.78 9.63 -92.44 -0.89 -7.67 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 C -0.25 -4.41 8.97 22.46 0.20 -4.21 16 28 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 29 H 0.07 0.35 7.66 -2.39 -0.02 0.33 16 30 H 0.07 0.32 7.66 -2.39 -0.02 0.30 16 31 H 0.16 1.30 6.29 -2.91 -0.02 1.28 16 32 H 0.15 1.58 6.05 -2.91 -0.02 1.56 16 33 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.41 6.96 6.21 -92.71 -0.58 6.38 16 37 H 0.41 10.18 8.49 -92.71 -0.79 9.39 16 38 H 0.04 1.81 8.14 -2.38 -0.02 1.79 16 39 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 40 H 0.04 1.62 7.20 -2.39 -0.02 1.60 16 41 H 0.04 1.50 7.57 -2.39 -0.02 1.48 16 42 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 43 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 0.67 7.66 -2.39 -0.02 0.65 16 45 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 46 H 0.15 2.16 6.30 -2.91 -0.02 2.14 16 Total: -1.00 -80.09 378.71 1.56 -78.53 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -0.41 Total: 22.74 kcal Atomic # 6 Polarization: -3.71 SS G_CDS: 6.67 Total: 2.97 kcal Atomic # 7 Polarization: -101.74 SS G_CDS: -4.67 Total: -106.40 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.92 Total: -42.07 kcal Atomic # 14 Polarization: 42.35 SS G_CDS: 1.88 Total: 44.23 kcal Total: -80.09 1.56 -78.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123735255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.324 kcal (2) G-P(sol) polarization free energy of solvation -80.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds