Wall clock time and date at job start Tue Mar 31 2020 15:54:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09003 * 109.58323 * 2 1 4 4 C 1.53191 * 109.58096 * 239.71341 * 2 1 3 5 5 C 1.53045 * 109.30644 * 185.57697 * 4 2 1 6 6 C 1.53038 * 109.53834 * 61.36861 * 5 4 2 7 7 H 1.08994 * 109.50340 * 58.61561 * 6 5 4 8 8 N 1.46506 * 109.49487 * 178.68270 * 6 5 4 9 9 C 1.34778 * 119.99337 * 205.00010 * 8 6 5 10 10 O 1.21279 * 120.00617 * 359.97438 * 9 8 6 11 11 C 1.50706 * 119.99381 * 180.02562 * 9 8 6 12 12 C 1.53004 * 109.46523 * 179.97438 * 11 9 8 13 13 C 1.53005 * 109.46681 * 179.97438 * 12 11 9 14 14 C 1.53000 * 109.46874 * 180.02562 * 13 12 11 15 15 F 1.39895 * 109.47527 * 60.00168 * 14 13 12 16 16 F 1.39900 * 109.46934 * 179.97438 * 14 13 12 17 17 F 1.39901 * 109.47275 * 299.99583 * 14 13 12 18 18 C 1.53192 * 109.31215 * 298.63084 * 6 5 4 19 19 N 1.46922 * 109.58651 * 120.42567 * 2 1 3 20 20 C 1.36939 * 120.63155 * 353.41460 * 19 2 1 21 21 H 1.07996 * 120.00114 * 29.01124 * 20 19 2 22 22 C 1.38814 * 120.00042 * 209.01185 * 20 19 2 23 23 N 1.31622 * 119.99965 * 15.01701 * 22 20 19 24 24 Si 1.86801 * 120.00102 * 195.01304 * 22 20 19 25 25 H 1.48502 * 109.46829 * 90.00298 * 24 22 20 26 26 H 1.48491 * 109.47233 * 210.00037 * 24 22 20 27 27 H 1.48495 * 109.47019 * 330.00320 * 24 22 20 28 28 H 1.08992 * 109.46878 * 180.29226 * 1 2 3 29 29 H 1.09006 * 109.46521 * 300.28229 * 1 2 3 30 30 H 1.08995 * 109.47192 * 60.28344 * 1 2 3 31 31 H 1.08992 * 109.49598 * 65.63271 * 4 2 1 32 32 H 1.08993 * 109.50020 * 305.52316 * 4 2 1 33 33 H 1.09003 * 109.46352 * 301.34712 * 5 4 2 34 34 H 1.09000 * 109.46009 * 181.38727 * 5 4 2 35 35 H 0.96990 * 120.00566 * 24.99615 * 8 6 5 36 36 H 1.08995 * 109.46982 * 60.00255 * 11 9 8 37 37 H 1.08999 * 109.47063 * 299.99750 * 11 9 8 38 38 H 1.08999 * 109.47533 * 299.99813 * 12 11 9 39 39 H 1.09004 * 109.47152 * 60.00553 * 12 11 9 40 40 H 1.08999 * 109.47003 * 300.00160 * 13 12 11 41 41 H 1.08992 * 109.47131 * 60.00096 * 13 12 11 42 42 H 1.09000 * 109.59000 * 174.42497 * 18 6 5 43 43 H 1.08998 * 109.58600 * 294.84873 * 18 6 5 44 44 H 0.96997 * 119.99951 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7279 -1.2463 5 6 3.5675 -0.8466 -1.1712 6 6 3.9569 -1.6658 0.0614 7 1 3.4988 -2.6530 0.0018 8 7 5.4143 -1.8055 0.1152 9 6 5.9676 -2.8491 0.7641 10 8 5.2592 -3.6724 1.3038 11 6 7.4668 -2.9925 0.8199 12 6 7.8296 -4.2513 1.6104 13 6 9.3516 -4.3972 1.6666 14 6 9.7144 -5.6563 2.4565 15 9 9.1615 -6.7769 1.8276 16 9 11.1061 -5.7900 2.5073 17 9 9.2076 -5.5535 3.7564 18 6 3.4651 -0.9486 1.3225 19 7 2.0226 -0.7010 1.1936 20 6 1.1537 -1.1161 2.1672 21 1 0.1361 -1.3704 1.9101 22 6 1.5809 -1.2099 3.4846 23 7 2.7040 -0.6321 3.8551 24 14 0.5618 -2.1563 4.7318 25 1 0.9962 -3.5762 4.7506 26 1 0.7524 -1.5625 6.0794 27 1 -0.8731 -2.0825 4.3567 28 1 -0.3633 -1.0276 0.0052 29 1 -0.3632 0.5183 0.8875 30 1 -0.3633 0.5094 -0.8925 31 1 1.7660 -0.1642 -2.1369 32 1 1.6030 -1.7237 -1.2934 33 1 4.0062 0.1487 -1.0991 34 1 3.9378 -1.3423 -2.0685 35 1 5.9809 -1.1470 -0.3161 36 1 7.8972 -2.1194 1.3102 37 1 7.8621 -3.0724 -0.1927 38 1 7.4343 -4.1710 2.6230 39 1 7.3991 -5.1247 1.1204 40 1 9.7465 -4.4777 0.6538 41 1 9.7825 -3.5239 2.1562 42 1 3.6519 -1.5744 2.1952 43 1 3.9904 0.0002 1.4316 44 1 3.0026 -0.6980 4.7756 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132322493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:04 Heat of formation + Delta-G solvation = -215.586080 kcal Electronic energy + Delta-G solvation = -28047.401555 eV Core-core repulsion = 23583.394618 eV Total energy + Delta-G solvation = -4464.006937 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 24.35 seconds Orbital eigenvalues (eV) -51.06256 -48.56878 -48.56027 -40.92561 -39.26912 -36.17152 -35.71895 -34.64847 -32.38999 -31.74184 -30.37418 -27.73927 -26.82273 -25.27742 -23.97764 -22.88258 -22.04563 -21.33358 -20.77772 -19.51795 -19.26474 -18.63457 -18.33250 -17.55635 -17.28982 -16.84733 -16.54913 -15.82852 -15.58765 -15.47914 -15.39972 -15.09839 -14.99760 -14.93405 -14.76560 -14.71433 -14.66076 -14.38592 -14.13083 -13.70998 -13.44177 -13.12820 -13.00513 -12.81273 -12.73444 -12.70808 -12.56715 -12.36365 -12.27073 -12.09497 -11.96235 -11.81661 -11.64944 -11.39461 -11.12804 -10.72508 -10.54320 -9.99316 -8.62089 -7.85527 -5.31396 1.39273 1.44574 1.49656 1.78453 1.84756 2.31249 2.50439 2.92215 3.08527 3.13930 3.30958 3.65683 3.81189 3.98345 4.00868 4.05574 4.11430 4.26016 4.39078 4.41577 4.52677 4.58868 4.64921 4.72206 4.72970 4.84442 4.90849 5.01149 5.04595 5.08385 5.20099 5.23568 5.32983 5.38024 5.54204 5.56443 5.62932 5.70448 5.84448 6.41592 6.74107 7.16478 7.47210 7.90921 8.39029 9.19196 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014265 B = 0.003139 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1962.425683 B = 8919.182439 C =10390.814229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.023 0.977 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.130 3.870 7 H 0.045 0.955 8 N -0.710 5.710 9 C 0.495 3.505 10 O -0.596 6.596 11 C -0.121 4.121 12 C -0.112 4.112 13 C -0.151 4.151 14 C 0.444 3.556 15 F -0.195 7.195 16 F -0.188 7.188 17 F -0.199 7.199 18 C 0.179 3.821 19 N -0.605 5.605 20 C -0.250 4.250 21 H 0.074 0.926 22 C -0.052 4.052 23 N -0.933 5.933 24 Si 0.954 3.046 25 H -0.298 1.298 26 H -0.293 1.293 27 H -0.261 1.261 28 H 0.044 0.956 29 H 0.037 0.963 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.416 0.584 36 H 0.123 0.877 37 H 0.139 0.861 38 H 0.052 0.948 39 H 0.065 0.935 40 H 0.144 0.856 41 H 0.135 0.865 42 H 0.042 0.958 43 H -0.002 1.002 44 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.537 -2.084 -13.008 20.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.040 0.960 4 C -0.159 4.159 5 C -0.144 4.144 6 C 0.023 3.977 7 H 0.063 0.937 8 N -0.362 5.362 9 C 0.283 3.717 10 O -0.477 6.477 11 C -0.160 4.160 12 C -0.150 4.150 13 C -0.188 4.188 14 C 0.391 3.609 15 F -0.177 7.177 16 F -0.169 7.169 17 F -0.181 7.181 18 C 0.052 3.948 19 N -0.329 5.329 20 C -0.381 4.381 21 H 0.091 0.909 22 C -0.247 4.247 23 N -0.580 5.580 24 Si 0.783 3.217 25 H -0.226 1.226 26 H -0.220 1.220 27 H -0.186 1.186 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.114 0.886 32 H 0.068 0.932 33 H 0.093 0.907 34 H 0.104 0.896 35 H 0.253 0.747 36 H 0.141 0.859 37 H 0.157 0.843 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.162 0.838 41 H 0.153 0.847 42 H 0.060 0.940 43 H 0.016 0.984 44 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 15.071 -2.663 -12.468 19.740 hybrid contribution -0.365 -0.607 1.567 1.720 sum 14.706 -3.270 -10.900 18.595 Atomic orbital electron populations 1.21743 0.94920 1.01053 1.01043 1.20806 0.94200 0.93413 0.86786 0.95953 1.21956 0.94942 1.00717 0.98240 1.21633 0.96807 1.00023 0.95934 1.21451 0.80121 0.98710 0.97442 0.93658 1.45915 1.07269 1.27248 1.55749 1.21616 0.92633 0.80457 0.76947 1.90744 1.65673 1.44392 1.46853 1.21612 0.89049 1.00176 1.05182 1.21257 0.93474 0.98919 1.01349 1.22924 0.97994 0.93864 1.04052 1.21104 0.73999 0.87402 0.78437 1.93167 1.85595 1.56794 1.82109 1.93177 1.30635 1.96619 1.96472 1.93178 1.87316 1.96351 1.41206 1.20790 0.83568 0.95291 0.95146 1.44339 1.02709 1.65552 1.20287 1.19492 0.95202 1.36528 0.86839 0.90877 1.25752 0.99047 1.01076 0.98874 1.70146 1.25015 1.46364 1.16446 0.85454 0.79409 0.78023 0.78821 1.22563 1.21974 1.18576 0.93700 0.94395 0.90224 0.88637 0.93189 0.90725 0.89572 0.74743 0.85864 0.84303 0.92930 0.91591 0.83797 0.84681 0.93994 0.98358 0.94675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.68 7.95 71.99 0.57 -4.11 16 2 C 0.15 6.03 3.50 44.98 0.16 6.19 16 3 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 4 C -0.12 -3.63 5.37 30.67 0.16 -3.47 16 5 C -0.11 -2.98 5.35 30.62 0.16 -2.81 16 6 C 0.13 4.88 2.61 45.07 0.12 4.99 16 7 H 0.05 2.04 7.58 -2.39 -0.02 2.03 16 8 N -0.71 -20.54 5.08 -442.15 -2.25 -22.78 16 9 C 0.50 15.64 7.80 87.66 0.68 16.32 16 10 O -0.60 -26.80 15.64 -3.03 -0.05 -26.85 16 11 C -0.12 -2.08 5.70 29.85 0.17 -1.91 16 12 C -0.11 -2.29 4.26 30.60 0.13 -2.16 16 13 C -0.15 -1.84 5.26 30.60 0.16 -1.68 16 14 C 0.44 8.44 3.16 71.98 0.23 8.67 16 15 F -0.20 -4.37 16.80 44.97 0.76 -3.62 16 16 F -0.19 -3.45 17.32 44.97 0.78 -2.67 16 17 F -0.20 -4.86 16.80 44.97 0.76 -4.10 16 18 C 0.18 8.87 4.86 86.36 0.42 9.29 16 19 N -0.60 -30.62 2.99 -675.22 -2.02 -32.64 16 20 C -0.25 -14.12 8.61 84.03 0.72 -13.40 16 21 H 0.07 3.99 6.20 -2.91 -0.02 3.97 16 22 C -0.05 -3.09 4.96 84.86 0.42 -2.67 16 23 N -0.93 -58.03 11.14 21.65 0.24 -57.79 16 24 Si 0.95 48.05 29.58 68.60 2.03 50.08 16 25 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 26 H -0.29 -14.70 7.11 99.48 0.71 -13.99 16 27 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 28 H 0.04 1.67 7.40 -2.39 -0.02 1.65 16 29 H 0.04 1.51 7.66 -2.38 -0.02 1.49 16 30 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 31 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 32 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 33 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 34 H 0.09 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.42 8.02 8.60 -92.72 -0.80 7.22 16 36 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 37 H 0.14 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.05 1.44 7.76 -2.39 -0.02 1.42 16 39 H 0.07 1.58 7.76 -2.38 -0.02 1.56 16 40 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.14 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.04 2.53 6.06 -2.39 -0.01 2.51 16 43 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 44 H 0.24 14.92 8.31 -92.71 -0.77 14.14 16 Total: -1.00 -80.91 362.93 4.57 -76.33 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: 0.21 Total: 10.78 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 4.11 Total: 13.25 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -4.02 Total: -113.21 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.05 Total: -26.85 kcal Atomic # 9 Polarization: -12.68 SS G_CDS: 2.29 Total: -10.39 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 2.03 Total: 50.08 kcal Total: -80.91 4.57 -76.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132322493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -139.251 kcal (2) G-P(sol) polarization free energy of solvation -80.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 24.35 seconds