Wall clock time and date at job start Tue Mar 31 2020 15:54:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08999 * 109.58544 * 2 1 4 4 C 1.53190 * 109.70038 * 239.64139 * 2 1 3 5 5 C 1.53111 * 109.32903 * 185.50693 * 4 2 1 6 6 C 1.53038 * 109.49951 * 61.34922 * 5 4 2 7 7 H 1.08999 * 109.49562 * 178.68568 * 6 5 4 8 8 N 1.46500 * 109.50185 * 58.61456 * 6 5 4 9 9 C 1.34771 * 120.00151 * 155.06177 * 8 6 5 10 10 O 1.21281 * 119.99964 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00189 * 180.02562 * 9 8 6 12 12 C 1.53005 * 109.47368 * 180.02562 * 11 9 8 13 13 C 1.53003 * 109.47089 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.46655 * 179.97438 * 13 12 11 15 15 F 1.39903 * 109.47113 * 60.00639 * 14 13 12 16 16 F 1.39899 * 109.46911 * 180.02562 * 14 13 12 17 17 F 1.39895 * 109.47524 * 300.00332 * 14 13 12 18 18 C 1.53200 * 109.33917 * 298.64875 * 6 5 4 19 19 N 1.46928 * 109.58184 * 120.28675 * 2 1 3 20 20 C 1.36930 * 120.63227 * 353.50976 * 19 2 1 21 21 H 1.08006 * 120.00147 * 41.24980 * 20 19 2 22 22 C 1.38815 * 120.00257 * 221.23935 * 20 19 2 23 23 N 1.31619 * 120.00303 * 214.83815 * 22 20 19 24 24 Si 1.86797 * 119.99670 * 34.83758 * 22 20 19 25 25 H 1.48505 * 109.47355 * 84.62446 * 24 22 20 26 26 H 1.48501 * 109.47392 * 204.62714 * 24 22 20 27 27 H 1.48501 * 109.47274 * 324.62739 * 24 22 20 28 28 H 1.09000 * 109.47193 * 299.71933 * 1 2 3 29 29 H 1.09007 * 109.46991 * 59.71357 * 1 2 3 30 30 H 1.08998 * 109.47470 * 179.71527 * 1 2 3 31 31 H 1.08996 * 109.50479 * 305.46224 * 4 2 1 32 32 H 1.09010 * 109.49401 * 65.53152 * 4 2 1 33 33 H 1.08999 * 109.45069 * 301.35348 * 5 4 2 34 34 H 1.08996 * 109.50105 * 181.36875 * 5 4 2 35 35 H 0.96999 * 119.99817 * 335.07267 * 8 6 5 36 36 H 1.09001 * 109.47188 * 60.00102 * 11 9 8 37 37 H 1.09004 * 109.47303 * 300.00042 * 11 9 8 38 38 H 1.09001 * 109.47063 * 59.99805 * 12 11 9 39 39 H 1.09004 * 109.46763 * 300.00152 * 12 11 9 40 40 H 1.09002 * 109.46437 * 60.00330 * 13 12 11 41 41 H 1.08994 * 109.47157 * 300.00020 * 13 12 11 42 42 H 1.08993 * 109.58534 * 174.43929 * 18 6 5 43 43 H 1.08994 * 109.58761 * 294.72691 * 18 6 5 44 44 H 0.96993 * 119.99804 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0464 -0.7289 -1.2445 5 6 3.5712 -0.8447 -1.1678 6 6 3.9601 -1.6609 0.0670 7 1 5.0445 -1.7631 0.1088 8 7 3.3464 -2.9889 -0.0114 9 6 3.9031 -4.0281 0.6416 10 8 4.9119 -3.8639 1.2944 11 6 3.2722 -5.3942 0.5605 12 6 4.0951 -6.3859 1.3854 13 6 3.4541 -7.7728 1.3035 14 6 4.2773 -8.7645 2.1279 15 9 4.3129 -8.3453 3.4622 16 9 3.6916 -10.0327 2.0526 17 9 5.5805 -8.8224 1.6225 18 6 3.4653 -0.9426 1.3264 19 7 2.0225 -0.6981 1.1954 20 6 1.1533 -1.1125 2.1690 21 1 0.2066 -1.5546 1.8952 22 6 1.4890 -0.9647 3.5078 23 7 1.1082 -1.8687 4.3854 24 14 2.4812 0.5171 4.0637 25 1 1.5673 1.6625 4.3053 26 1 3.2033 0.1869 5.3186 27 1 3.4618 0.8802 3.0093 28 1 -0.3633 0.5095 0.8925 29 1 -0.3633 0.5183 -0.8875 30 1 -0.3634 -1.0276 -0.0051 31 1 1.6079 -1.7257 -1.2906 32 1 1.7684 -0.1675 -2.1365 33 1 4.0078 0.1516 -1.0969 34 1 3.9440 -1.3414 -2.0635 35 1 2.5395 -3.1201 -0.5334 36 1 3.2448 -5.7207 -0.4792 37 1 2.2567 -5.3494 0.9541 38 1 4.1221 -6.0593 2.4250 39 1 5.1107 -6.4308 0.9921 40 1 3.4268 -8.0995 0.2640 41 1 2.4386 -7.7275 1.6970 42 1 3.6523 -1.5667 2.2002 43 1 3.9903 0.0063 1.4360 44 1 1.3425 -1.7651 5.3209 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132322494.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:22 Heat of formation + Delta-G solvation = -189.826546 kcal Electronic energy + Delta-G solvation = -28647.821854 eV Core-core repulsion = 24184.931934 eV Total energy + Delta-G solvation = -4462.889920 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -50.13812 -47.65954 -47.58997 -39.65473 -37.84481 -34.98614 -34.13357 -32.69571 -31.04101 -30.71225 -29.30844 -26.40366 -24.97322 -24.32766 -22.46961 -21.97169 -20.62321 -20.18703 -18.91090 -18.59500 -18.34289 -17.68001 -16.59057 -16.36021 -15.80262 -15.41545 -15.05269 -14.55234 -14.53313 -14.32994 -14.07537 -13.96479 -13.77995 -13.77326 -13.68361 -13.52334 -13.29841 -13.05736 -12.77705 -12.53339 -12.22327 -12.06005 -11.81656 -11.71237 -11.43919 -11.38194 -11.22924 -10.93464 -10.85381 -10.63425 -10.47794 -10.27045 -9.92671 -9.81345 -9.51595 -9.33020 -8.55679 -8.25999 -6.67982 -6.08040 -3.37790 2.70981 3.13878 3.42448 3.53247 3.55712 3.59161 3.80630 3.99439 4.02709 4.59673 4.80272 4.85198 4.90638 5.02797 5.18413 5.26624 5.29279 5.32842 5.36257 5.43995 5.44530 5.67605 5.83081 5.97137 6.03290 6.03522 6.17444 6.21127 6.26438 6.32032 6.34223 6.47540 6.51540 6.57376 6.92880 6.99420 7.06858 7.11973 8.01470 8.06079 8.41254 8.74986 9.00583 9.73440 10.22216 11.07363 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014419 B = 0.003581 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.418703 B = 7817.649025 C = 8722.050125 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.161 3.839 3 H 0.025 0.975 4 C -0.129 4.129 5 C -0.119 4.119 6 C 0.126 3.874 7 H 0.077 0.923 8 N -0.701 5.701 9 C 0.516 3.484 10 O -0.551 6.551 11 C -0.136 4.136 12 C -0.108 4.108 13 C -0.166 4.166 14 C 0.451 3.549 15 F -0.181 7.181 16 F -0.189 7.189 17 F -0.185 7.185 18 C 0.134 3.866 19 N -0.590 5.590 20 C -0.274 4.274 21 H 0.075 0.925 22 C 0.053 3.947 23 N -0.878 5.878 24 Si 0.842 3.158 25 H -0.289 1.289 26 H -0.298 1.298 27 H -0.262 1.262 28 H 0.062 0.938 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.397 0.603 36 H 0.089 0.911 37 H 0.100 0.900 38 H 0.087 0.913 39 H 0.081 0.919 40 H 0.107 0.893 41 H 0.112 0.888 42 H 0.072 0.928 43 H 0.030 0.970 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.071 -8.905 -12.264 15.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.056 3.944 3 H 0.043 0.957 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.019 3.981 7 H 0.095 0.905 8 N -0.352 5.352 9 C 0.302 3.698 10 O -0.429 6.429 11 C -0.176 4.176 12 C -0.146 4.146 13 C -0.204 4.204 14 C 0.397 3.603 15 F -0.162 7.162 16 F -0.171 7.171 17 F -0.167 7.167 18 C 0.007 3.993 19 N -0.315 5.315 20 C -0.402 4.402 21 H 0.092 0.908 22 C -0.150 4.150 23 N -0.516 5.516 24 Si 0.669 3.331 25 H -0.217 1.217 26 H -0.224 1.224 27 H -0.187 1.187 28 H 0.081 0.919 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.106 0.894 39 H 0.099 0.901 40 H 0.126 0.874 41 H 0.130 0.870 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 3.779 -8.871 -11.587 15.074 hybrid contribution 0.190 0.695 0.471 0.861 sum 3.968 -8.176 -11.116 14.358 Atomic orbital electron populations 1.21748 0.95450 1.01603 1.00197 1.20590 0.93494 0.93368 0.86985 0.95720 1.22045 0.94921 1.00927 0.98971 1.21697 0.97155 1.00053 0.96766 1.21511 0.97028 0.82305 0.97214 0.90500 1.45807 1.29657 1.08339 1.51400 1.20336 0.84338 0.86200 0.78878 1.90675 1.25799 1.85396 1.41008 1.21543 1.01502 0.92761 1.01770 1.21314 0.99657 0.90435 1.03211 1.22927 1.00930 0.95011 1.01566 1.20639 0.79072 0.81126 0.79416 1.93214 1.96457 1.89805 1.36727 1.93174 1.84003 1.43646 1.96263 1.93177 1.39904 1.96533 1.87057 1.21682 0.85266 0.96635 0.95711 1.44306 1.01982 1.65221 1.19968 1.18475 1.02219 1.35257 0.84240 0.90798 1.25571 0.96622 0.96800 0.96010 1.70059 1.47029 1.31270 1.03261 0.87388 0.80678 0.86873 0.78178 1.21656 1.22437 1.18666 0.91868 0.94455 0.92686 0.92334 0.92657 0.91190 0.92632 0.76816 0.89267 0.88128 0.89417 0.90058 0.87416 0.86965 0.90923 0.95251 0.92758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.27 8.08 37.16 0.30 -1.97 16 2 C 0.16 2.91 3.49 -67.60 -0.24 2.67 16 3 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -1.84 5.21 -26.58 -0.14 -1.98 16 5 C -0.12 -1.65 5.59 -26.65 -0.15 -1.80 16 6 C 0.13 2.15 2.81 -67.81 -0.19 1.96 16 7 H 0.08 1.35 7.58 -51.93 -0.39 0.95 16 8 N -0.70 -11.17 4.92 -53.69 -0.26 -11.44 16 9 C 0.52 8.67 7.80 -10.99 -0.09 8.59 16 10 O -0.55 -11.40 15.65 5.56 0.09 -11.31 16 11 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 12 C -0.11 -1.31 4.26 -26.73 -0.11 -1.43 16 13 C -0.17 -1.51 5.26 -26.73 -0.14 -1.65 16 14 C 0.45 5.02 3.16 37.16 0.12 5.14 16 15 F -0.18 -2.39 16.80 2.25 0.04 -2.36 16 16 F -0.19 -2.10 17.32 2.25 0.04 -2.06 16 17 F -0.19 -2.22 16.80 2.25 0.04 -2.18 16 18 C 0.13 2.86 4.19 -3.70 -0.02 2.84 16 19 N -0.59 -12.90 2.38 -164.77 -0.39 -13.30 16 20 C -0.27 -7.08 8.42 -15.06 -0.13 -7.20 16 21 H 0.07 2.04 6.83 -52.48 -0.36 1.68 16 22 C 0.05 1.48 4.82 -17.43 -0.08 1.39 16 23 N -0.88 -25.92 13.97 55.49 0.78 -25.14 16 24 Si 0.84 21.51 27.40 -169.99 -4.66 16.86 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 27 H -0.26 -6.45 5.24 56.52 0.30 -6.15 16 28 H 0.06 1.22 7.68 -51.93 -0.40 0.82 16 29 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.97 7.42 -51.93 -0.39 0.58 16 31 H 0.06 0.82 6.40 -51.93 -0.33 0.49 16 32 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.40 5.56 6.77 -40.82 -0.28 5.28 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 38 H 0.09 1.30 7.76 -51.93 -0.40 0.89 16 39 H 0.08 1.02 7.76 -51.93 -0.40 0.62 16 40 H 0.11 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.83 7.02 -51.93 -0.36 1.46 16 43 H 0.03 0.64 6.70 -51.93 -0.35 0.30 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -31.45 356.98 -6.69 -38.13 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: -6.71 Total: 2.66 kcal Atomic # 6 Polarization: 5.77 SS G_CDS: -1.02 Total: 4.75 kcal Atomic # 7 Polarization: -49.99 SS G_CDS: 0.12 Total: -49.87 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.09 Total: -11.31 kcal Atomic # 9 Polarization: -6.71 SS G_CDS: 0.11 Total: -6.60 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.66 Total: 16.86 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -31.45 -6.69 -38.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132322494.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -151.692 kcal (2) G-P(sol) polarization free energy of solvation -31.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -183.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds