Wall clock time and date at job start Tue Mar 31 2020 15:54:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.70125 * 2 1 4 4 C 1.53187 * 109.58642 * 120.35658 * 2 1 3 5 5 C 1.53040 * 109.31397 * 174.42079 * 4 2 1 6 6 C 1.53044 * 109.53862 * 298.63565 * 5 4 2 7 7 H 1.08997 * 109.49310 * 301.38013 * 6 5 4 8 8 N 1.46502 * 109.49641 * 181.31436 * 6 5 4 9 9 C 1.34783 * 119.99537 * 154.72583 * 8 6 5 10 10 O 1.21277 * 120.00119 * 359.97438 * 9 8 6 11 11 C 1.50693 * 119.99707 * 180.02562 * 9 8 6 12 12 C 1.53002 * 109.46969 * 179.97438 * 11 9 8 13 13 C 1.53006 * 109.46976 * 179.97438 * 12 11 9 14 14 C 1.53002 * 109.46976 * 180.02562 * 13 12 11 15 15 F 1.39895 * 109.47251 * 59.99647 * 14 13 12 16 16 F 1.39896 * 109.46924 * 180.02562 * 14 13 12 17 17 F 1.39906 * 109.46972 * 300.00108 * 14 13 12 18 18 C 1.53188 * 109.31272 * 61.36374 * 6 5 4 19 19 N 1.46926 * 108.77489 * 305.36572 * 18 6 5 20 20 C 1.36936 * 120.63312 * 233.58595 * 19 18 6 21 21 H 1.08000 * 120.00221 * 150.18452 * 20 19 18 22 22 C 1.38812 * 119.99986 * 330.18638 * 20 19 18 23 23 N 1.31623 * 119.99887 * 344.48150 * 22 20 19 24 24 Si 1.86797 * 120.00248 * 164.48453 * 22 20 19 25 25 H 1.48504 * 109.47325 * 89.99710 * 24 22 20 26 26 H 1.48499 * 109.47490 * 210.00023 * 24 22 20 27 27 H 1.48506 * 109.46995 * 330.00018 * 24 22 20 28 28 H 1.09003 * 109.47117 * 299.64380 * 1 2 3 29 29 H 1.09008 * 109.47275 * 59.64076 * 1 2 3 30 30 H 1.08997 * 109.47090 * 179.64554 * 1 2 3 31 31 H 1.09002 * 109.50087 * 54.46915 * 4 2 1 32 32 H 1.09003 * 109.49725 * 294.37237 * 4 2 1 33 33 H 1.08995 * 109.46226 * 178.61706 * 5 4 2 34 34 H 1.09007 * 109.45067 * 58.65054 * 5 4 2 35 35 H 0.96989 * 120.00258 * 334.99633 * 8 6 5 36 36 H 1.09007 * 109.46942 * 299.99629 * 11 9 8 37 37 H 1.08998 * 109.47544 * 59.99851 * 11 9 8 38 38 H 1.08995 * 109.47350 * 299.99508 * 12 11 9 39 39 H 1.08995 * 109.47210 * 60.00104 * 12 11 9 40 40 H 1.09000 * 109.47351 * 300.00149 * 13 12 11 41 41 H 1.08995 * 109.46829 * 60.00162 * 13 12 11 42 42 H 1.09004 * 109.59005 * 65.14958 * 18 6 5 43 43 H 1.09002 * 109.59128 * 185.57846 * 18 6 5 44 44 H 0.97000 * 120.00086 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0435 -0.7294 1.2454 5 6 3.5675 -0.8480 1.1701 6 6 3.9569 -1.6658 -0.0636 7 1 3.4987 -2.6530 -0.0050 8 7 5.4142 -1.8054 -0.1176 9 6 5.9675 -2.8512 -0.7631 10 8 5.2589 -3.6770 -1.2987 11 6 7.4665 -2.9952 -0.8181 12 6 7.8292 -4.2572 -1.6035 13 6 9.3512 -4.4030 -1.6600 14 6 9.7138 -5.6647 -2.4459 15 9 9.2062 -5.5664 -3.7458 16 9 11.1055 -5.7983 -2.4970 17 9 9.1613 -6.7833 -1.8128 18 6 3.4651 -0.9470 -1.3238 19 7 2.0226 -0.6996 -1.1945 20 6 1.1537 -1.1127 -2.1690 21 1 0.1396 -1.3795 -1.9105 22 6 1.5763 -1.1884 -3.4890 23 7 2.6871 -0.5875 -3.8599 24 14 0.5686 -2.1430 -4.7391 25 1 -0.4251 -1.2372 -5.3695 26 1 1.4688 -2.6940 -5.7837 27 1 -0.1391 -3.2567 -4.0578 28 1 -0.3633 0.5083 0.8932 29 1 -0.3634 0.5194 -0.8868 30 1 -0.3633 -1.0276 -0.0064 31 1 1.6029 -1.7253 1.2913 32 1 1.7660 -0.1668 2.1368 33 1 3.9378 -1.3449 2.0667 34 1 4.0060 0.1474 1.0992 35 1 5.9808 -1.1473 0.3145 36 1 7.8973 -2.1236 -1.3112 37 1 7.8617 -3.0719 0.1948 38 1 7.3985 -5.1285 -1.1102 39 1 7.4340 -4.1809 -2.6164 40 1 9.7816 -3.5317 -2.1535 41 1 9.7467 -4.4792 -0.6472 42 1 3.9903 0.0020 -1.4317 43 1 3.6518 -1.5717 -2.1973 44 1 2.9823 -0.6402 -4.7824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132322495.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:28 Heat of formation + Delta-G solvation = -193.689780 kcal Electronic energy + Delta-G solvation = -28038.350168 eV Core-core repulsion = 23575.292726 eV Total energy + Delta-G solvation = -4463.057442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 4.39 seconds Orbital eigenvalues (eV) -50.24296 -47.76356 -47.69689 -39.57184 -37.70082 -35.15558 -34.31974 -32.80242 -30.99560 -29.92012 -29.38430 -26.10302 -25.11382 -24.22059 -22.31169 -21.96426 -20.62292 -19.96083 -19.21806 -18.70132 -18.44345 -17.71451 -16.44717 -16.41612 -15.91444 -15.58365 -14.94969 -14.65216 -14.62337 -14.16646 -13.99594 -13.90727 -13.87382 -13.81717 -13.77002 -13.46557 -13.36854 -12.93733 -12.80473 -12.38142 -12.26955 -12.02364 -11.80027 -11.56431 -11.41927 -11.11727 -11.01831 -10.88661 -10.67796 -10.51497 -10.39350 -10.25357 -9.96161 -9.75525 -9.44608 -9.32854 -8.52046 -8.40368 -6.59006 -5.73118 -3.17572 2.59412 3.02400 3.41256 3.45063 3.50923 3.53032 3.67741 3.87163 3.90245 4.54856 4.66153 4.70882 4.85689 5.13937 5.17227 5.21674 5.35032 5.37579 5.43381 5.53667 5.58923 5.69451 5.84502 5.97511 6.06981 6.10457 6.27384 6.31142 6.39480 6.45931 6.51100 6.62952 6.75072 6.96046 7.05062 7.13305 7.32796 7.73954 7.86896 7.93876 8.51695 8.65721 9.26179 9.90373 10.45861 11.35203 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.003133 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.535628 B = 8933.833263 C =10401.831193 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.081 0.919 8 N -0.722 5.722 9 C 0.507 3.493 10 O -0.532 6.532 11 C -0.136 4.136 12 C -0.111 4.111 13 C -0.166 4.166 14 C 0.451 3.549 15 F -0.181 7.181 16 F -0.189 7.189 17 F -0.184 7.184 18 C 0.170 3.830 19 N -0.584 5.584 20 C -0.253 4.253 21 H 0.069 0.931 22 C 0.007 3.993 23 N -0.901 5.901 24 Si 0.900 3.100 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.279 1.279 28 H 0.037 0.963 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.050 0.950 34 H 0.058 0.942 35 H 0.392 0.608 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.110 0.890 41 H 0.109 0.891 42 H 0.016 0.984 43 H 0.092 0.908 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.338 -3.260 9.859 17.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.042 0.958 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.010 3.990 7 H 0.099 0.901 8 N -0.372 5.372 9 C 0.292 3.708 10 O -0.408 6.408 11 C -0.176 4.176 12 C -0.149 4.149 13 C -0.204 4.204 14 C 0.397 3.603 15 F -0.163 7.163 16 F -0.171 7.171 17 F -0.165 7.165 18 C 0.043 3.957 19 N -0.307 5.307 20 C -0.383 4.383 21 H 0.087 0.913 22 C -0.192 4.192 23 N -0.545 5.545 24 Si 0.729 3.271 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.204 1.204 28 H 0.056 0.944 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.225 0.775 36 H 0.114 0.886 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.106 0.894 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.034 0.966 43 H 0.111 0.889 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 13.867 -3.887 9.263 17.123 hybrid contribution 0.046 -0.269 -0.632 0.688 sum 13.913 -4.155 8.631 16.892 Atomic orbital electron populations 1.21800 0.96002 1.01439 1.00147 1.20489 0.93075 0.93518 0.87086 0.95804 1.22048 0.94352 1.01316 0.98909 1.21674 0.97392 0.99599 0.96715 1.21981 0.77989 1.00822 0.98183 0.90085 1.46089 1.08583 1.26585 1.55980 1.20423 0.90118 0.81584 0.78665 1.90761 1.63570 1.41964 1.44489 1.21575 0.94034 0.99659 1.02336 1.21346 0.91128 0.99014 1.03442 1.22922 1.00676 0.94494 1.02299 1.20623 0.74100 0.86740 0.78816 1.93209 1.87004 1.96317 1.39739 1.93177 1.30802 1.96576 1.96503 1.93192 1.85400 1.56050 1.81864 1.21053 0.83565 0.96782 0.94343 1.44023 1.02652 1.64773 1.19256 1.19119 0.95057 1.38126 0.85994 0.91298 1.25075 0.97782 0.99274 0.97040 1.70001 1.24087 1.43718 1.16658 0.86346 0.79356 0.80045 0.81318 1.21475 1.21568 1.20402 0.94364 0.92016 0.92772 0.92093 0.92724 0.93171 0.92339 0.77535 0.88633 0.88977 0.89741 0.89433 0.87150 0.87300 0.96594 0.88947 0.93757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.55 7.95 37.16 0.30 -2.26 16 2 C 0.16 3.35 3.50 -67.60 -0.24 3.12 16 3 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.12 5.37 -26.61 -0.14 -2.27 16 5 C -0.12 -1.81 5.35 -26.69 -0.14 -1.95 16 6 C 0.12 2.18 2.61 -67.81 -0.18 2.01 16 7 H 0.08 1.77 7.57 -51.93 -0.39 1.38 16 8 N -0.72 -10.89 5.08 -53.69 -0.27 -11.16 16 9 C 0.51 8.04 7.80 -10.99 -0.09 7.95 16 10 O -0.53 -11.27 15.64 5.56 0.09 -11.19 16 11 C -0.14 -1.35 5.70 -27.89 -0.16 -1.51 16 12 C -0.11 -1.18 4.26 -26.73 -0.11 -1.30 16 13 C -0.17 -1.23 5.26 -26.73 -0.14 -1.37 16 14 C 0.45 4.48 3.16 37.16 0.12 4.60 16 15 F -0.18 -2.16 16.80 2.25 0.04 -2.13 16 16 F -0.19 -1.88 17.32 2.25 0.04 -1.84 16 17 F -0.18 -2.07 16.80 2.25 0.04 -2.03 16 18 C 0.17 4.05 4.86 -3.71 -0.02 4.03 16 19 N -0.58 -14.47 2.99 -164.77 -0.49 -14.96 16 20 C -0.25 -6.95 8.58 -15.06 -0.13 -7.08 16 21 H 0.07 1.84 6.23 -52.49 -0.33 1.51 16 22 C 0.01 0.21 4.94 -17.43 -0.09 0.12 16 23 N -0.90 -26.63 11.23 55.49 0.62 -26.00 16 24 Si 0.90 22.48 29.58 -169.99 -5.03 17.45 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 1.25 7.67 -51.92 -0.40 0.85 16 30 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 31 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.39 4.41 8.60 -40.82 -0.35 4.06 16 36 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 38 H 0.08 1.00 7.76 -51.93 -0.40 0.59 16 39 H 0.09 1.13 7.76 -51.93 -0.40 0.73 16 40 H 0.11 0.64 8.14 -51.93 -0.42 0.21 16 41 H 0.11 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.09 2.62 6.15 -51.93 -0.32 2.30 16 44 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -33.24 363.09 -7.28 -40.52 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -6.76 Total: 1.77 kcal Atomic # 6 Polarization: 5.11 SS G_CDS: -1.02 Total: 4.09 kcal Atomic # 7 Polarization: -51.98 SS G_CDS: -0.14 Total: -52.12 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 9 Polarization: -6.11 SS G_CDS: 0.11 Total: -6.00 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.03 Total: 17.45 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.24 -7.28 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132322495.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.166 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -186.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.39 seconds