Wall clock time and date at job start Tue Mar 31 2020 15:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58310 * 2 1 4 4 C 1.53189 * 109.58826 * 120.27619 * 2 1 3 5 5 C 1.53033 * 109.31690 * 174.42485 * 4 2 1 6 6 C 1.53039 * 109.54087 * 298.64016 * 5 4 2 7 7 H 1.09001 * 109.50575 * 181.31382 * 6 5 4 8 8 N 1.46504 * 109.49590 * 301.41315 * 6 5 4 9 9 C 1.34780 * 120.00007 * 204.99971 * 8 6 5 10 10 O 1.21276 * 120.00138 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99719 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.46933 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47190 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47190 * 179.97438 * 13 12 11 15 15 F 1.39907 * 109.47231 * 59.99816 * 14 13 12 16 16 F 1.39900 * 109.47067 * 179.97438 * 14 13 12 17 17 F 1.39894 * 109.47062 * 300.00086 * 14 13 12 18 18 C 1.53199 * 109.31479 * 61.35861 * 6 5 4 19 19 N 1.46920 * 109.58920 * 239.71310 * 2 1 3 20 20 C 1.36937 * 120.63511 * 6.60099 * 19 2 1 21 21 H 1.07998 * 119.99392 * 330.22743 * 20 19 2 22 22 C 1.38804 * 120.00464 * 150.22504 * 20 19 2 23 23 N 1.31626 * 120.00007 * 344.61315 * 22 20 19 24 24 Si 1.86797 * 120.00220 * 164.61293 * 22 20 19 25 25 H 1.48500 * 109.47235 * 90.00333 * 24 22 20 26 26 H 1.48503 * 109.47204 * 209.99982 * 24 22 20 27 27 H 1.48495 * 109.47002 * 329.99838 * 24 22 20 28 28 H 1.08998 * 109.47220 * 300.00274 * 1 2 3 29 29 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47050 * 60.00567 * 1 2 3 31 31 H 1.08997 * 109.50089 * 294.37953 * 4 2 1 32 32 H 1.09003 * 109.49608 * 54.44164 * 4 2 1 33 33 H 1.09006 * 109.45969 * 58.65385 * 5 4 2 34 34 H 1.09002 * 109.46823 * 178.62885 * 5 4 2 35 35 H 0.96998 * 120.00022 * 24.99551 * 8 6 5 36 36 H 1.08999 * 109.47369 * 299.99580 * 11 9 8 37 37 H 1.08992 * 109.47554 * 59.99712 * 11 9 8 38 38 H 1.09005 * 109.47212 * 299.99971 * 12 11 9 39 39 H 1.09002 * 109.47229 * 60.00117 * 12 11 9 40 40 H 1.08999 * 109.47241 * 299.99691 * 13 12 11 41 41 H 1.08992 * 109.46923 * 59.99829 * 13 12 11 42 42 H 1.08994 * 109.58126 * 65.15458 * 18 6 5 43 43 H 1.08994 * 109.58734 * 185.58099 * 18 6 5 44 44 H 0.96998 * 120.00060 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7276 1.2464 5 6 3.5674 -0.8463 1.1714 6 6 3.9570 -1.6656 -0.0611 7 1 5.0413 -1.7695 -0.1012 8 7 3.3406 -2.9923 0.0188 9 6 3.8973 -4.0342 -0.6301 10 8 4.9081 -3.8734 -1.2806 11 6 3.2636 -5.3989 -0.5474 12 6 4.0868 -6.3940 -1.3676 13 6 3.4431 -7.7796 -1.2842 14 6 4.2660 -8.7746 -2.1049 15 9 5.5682 -8.8340 -1.5967 16 9 3.6777 -10.0415 -2.0281 17 9 4.3051 -8.3582 -3.4399 18 6 3.4651 -0.9486 -1.3224 19 7 2.0226 -0.6981 -1.1952 20 6 1.1538 -1.1106 -2.1701 21 1 0.1396 -1.3771 -1.9118 22 6 1.5766 -1.1860 -3.4900 23 7 2.6891 -0.5876 -3.8599 24 14 0.5670 -2.1369 -4.7413 25 1 -0.4242 -1.2280 -5.3712 26 1 1.4662 -2.6891 -5.7862 27 1 -0.1436 -3.2495 -4.0614 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 1.7660 -0.1640 2.1370 32 1 1.6026 -1.7233 1.2939 33 1 4.0061 0.1490 1.0992 34 1 3.9378 -1.3421 2.0687 35 1 2.5320 -3.1208 0.5388 36 1 3.2327 -5.7228 0.4929 37 1 2.2493 -5.3532 -0.9438 38 1 4.1173 -6.0700 -2.4080 39 1 5.1013 -6.4399 -0.9715 40 1 3.4123 -8.1039 -0.2440 41 1 2.4289 -7.7333 -1.6805 42 1 3.9903 0.0002 -1.4316 43 1 3.6519 -1.5745 -2.1950 44 1 2.9844 -0.6400 -4.7824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132322496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:36 Heat of formation + Delta-G solvation = -192.207873 kcal Electronic energy + Delta-G solvation = -28718.179945 eV Core-core repulsion = 24255.186764 eV Total energy + Delta-G solvation = -4462.993182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.18124 -47.70130 -47.63543 -39.54585 -37.69907 -35.00011 -34.05632 -32.73334 -30.97964 -29.94340 -29.27395 -26.24638 -25.06491 -24.34135 -22.20307 -21.99384 -20.59725 -20.14441 -18.73197 -18.63872 -18.37819 -17.70053 -16.56322 -16.18325 -15.81627 -15.42350 -14.85493 -14.59270 -14.52422 -14.12361 -14.06487 -13.90850 -13.84286 -13.80884 -13.71847 -13.43817 -13.15429 -12.99354 -12.78418 -12.45173 -12.22678 -11.90193 -11.75048 -11.47625 -11.23375 -11.17174 -10.97364 -10.88911 -10.87671 -10.71010 -10.40572 -10.34107 -9.97315 -9.55815 -9.47098 -9.26783 -8.45620 -8.34365 -6.59233 -5.75518 -3.20099 2.66578 3.18943 3.36674 3.42967 3.45977 3.58892 3.78311 3.94616 4.01738 4.49187 4.78424 4.80646 4.98858 5.25016 5.30139 5.30474 5.34741 5.36073 5.47485 5.49921 5.58608 5.65993 5.97816 6.00171 6.10114 6.14531 6.17638 6.31555 6.33585 6.43213 6.51792 6.59476 6.69473 6.90632 7.03857 7.11714 7.40055 7.69003 7.83008 8.12283 8.49052 8.82140 9.23187 9.87756 10.44588 11.32608 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003876 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.351371 B = 7221.926396 C = 8443.841700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.165 3.835 3 H 0.024 0.976 4 C -0.130 4.130 5 C -0.118 4.118 6 C 0.118 3.882 7 H 0.074 0.926 8 N -0.701 5.701 9 C 0.512 3.488 10 O -0.547 6.547 11 C -0.137 4.137 12 C -0.109 4.109 13 C -0.166 4.166 14 C 0.451 3.549 15 F -0.184 7.184 16 F -0.189 7.189 17 F -0.181 7.181 18 C 0.163 3.837 19 N -0.583 5.583 20 C -0.252 4.252 21 H 0.067 0.933 22 C 0.007 3.993 23 N -0.898 5.898 24 Si 0.895 3.105 25 H -0.288 1.288 26 H -0.290 1.290 27 H -0.281 1.281 28 H 0.036 0.964 29 H 0.051 0.949 30 H 0.060 0.940 31 H 0.052 0.948 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.050 0.950 35 H 0.394 0.606 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.083 0.917 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.024 0.976 43 H 0.095 0.905 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 -11.373 10.914 15.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.058 3.942 3 H 0.041 0.959 4 C -0.169 4.169 5 C -0.156 4.156 6 C 0.012 3.988 7 H 0.092 0.908 8 N -0.351 5.351 9 C 0.297 3.703 10 O -0.425 6.425 11 C -0.177 4.177 12 C -0.147 4.147 13 C -0.205 4.205 14 C 0.397 3.603 15 F -0.166 7.166 16 F -0.171 7.171 17 F -0.163 7.163 18 C 0.036 3.964 19 N -0.306 5.306 20 C -0.382 4.382 21 H 0.084 0.916 22 C -0.192 4.192 23 N -0.542 5.542 24 Si 0.725 3.275 25 H -0.215 1.215 26 H -0.216 1.216 27 H -0.206 1.206 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.069 0.931 35 H 0.229 0.771 36 H 0.108 0.892 37 H 0.115 0.885 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.042 0.958 43 H 0.113 0.887 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.789 -11.244 10.246 15.233 hybrid contribution -0.808 -0.662 -0.666 1.239 sum -0.019 -11.907 9.580 15.282 Atomic orbital electron populations 1.21792 0.96156 1.01164 1.00159 1.20453 0.92854 0.93648 0.87216 0.95876 1.22056 0.95164 1.00630 0.99055 1.21685 0.96980 1.00145 0.96826 1.21756 0.96922 0.82014 0.98106 0.90760 1.45848 1.29298 1.08616 1.51368 1.20300 0.84631 0.86080 0.79255 1.90691 1.25568 1.85338 1.40924 1.21557 1.01203 0.93084 1.01855 1.21325 0.99837 0.90372 1.03166 1.22933 1.00794 0.95042 1.01695 1.20638 0.79131 0.81173 0.79320 1.93185 1.39921 1.96525 1.86940 1.93175 1.83898 1.43761 1.96247 1.93207 1.96461 1.89898 1.36706 1.21160 0.83753 0.96992 0.94461 1.44034 1.02738 1.64882 1.18940 1.19036 0.94937 1.38176 0.86004 0.91561 1.25070 0.97692 0.99457 0.96994 1.69988 1.23792 1.43636 1.16738 0.86431 0.79432 0.80005 0.81658 1.21488 1.21580 1.20622 0.94473 0.92998 0.92061 0.92934 0.92689 0.91216 0.93109 0.77108 0.89209 0.88501 0.89528 0.89878 0.87327 0.87123 0.95830 0.88730 0.93645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.37 7.95 37.16 0.30 -2.07 16 2 C 0.16 3.16 3.49 -67.61 -0.24 2.92 16 3 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 4 C -0.13 -1.97 5.21 -26.62 -0.14 -2.11 16 5 C -0.12 -1.80 5.59 -26.69 -0.15 -1.95 16 6 C 0.12 2.17 2.81 -67.81 -0.19 1.98 16 7 H 0.07 1.43 7.58 -51.93 -0.39 1.03 16 8 N -0.70 -11.63 4.92 -53.68 -0.26 -11.90 16 9 C 0.51 8.79 7.80 -10.99 -0.09 8.70 16 10 O -0.55 -11.70 15.64 5.56 0.09 -11.61 16 11 C -0.14 -1.64 5.70 -27.88 -0.16 -1.80 16 12 C -0.11 -1.31 4.26 -26.73 -0.11 -1.42 16 13 C -0.17 -1.47 5.26 -26.73 -0.14 -1.61 16 14 C 0.45 4.93 3.16 37.16 0.12 5.04 16 15 F -0.18 -2.19 16.80 2.25 0.04 -2.15 16 16 F -0.19 -2.06 17.32 2.25 0.04 -2.02 16 17 F -0.18 -2.35 16.80 2.25 0.04 -2.31 16 18 C 0.16 3.81 4.88 -3.69 -0.02 3.79 16 19 N -0.58 -13.49 2.91 -164.75 -0.48 -13.97 16 20 C -0.25 -6.47 8.57 -15.06 -0.13 -6.60 16 21 H 0.07 1.66 6.23 -52.49 -0.33 1.33 16 22 C 0.01 0.19 4.94 -17.43 -0.09 0.11 16 23 N -0.90 -26.13 11.24 55.49 0.62 -25.50 16 24 Si 0.89 21.57 29.58 -169.99 -5.03 16.54 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 H -0.29 -7.20 7.11 56.52 0.40 -6.79 16 27 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 28 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.90 7.43 -51.93 -0.39 0.52 16 30 H 0.06 1.19 7.64 -51.93 -0.40 0.79 16 31 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.81 6.40 -51.93 -0.33 0.47 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.39 5.70 6.77 -40.82 -0.28 5.43 16 36 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.10 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.09 1.26 7.76 -51.93 -0.40 0.85 16 39 H 0.08 1.05 7.76 -51.93 -0.40 0.65 16 40 H 0.11 0.70 8.14 -51.93 -0.42 0.28 16 41 H 0.11 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.09 2.62 6.16 -51.93 -0.32 2.30 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 359.60 15.07 5.42 5.42 Total: -1.00 -31.30 359.60 -7.16 -38.46 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -6.60 Total: 4.07 kcal Atomic # 6 Polarization: 6.01 SS G_CDS: -1.03 Total: 4.98 kcal Atomic # 7 Polarization: -51.25 SS G_CDS: -0.12 Total: -51.37 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -6.60 SS G_CDS: 0.11 Total: -6.48 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -31.30 -7.16 -38.46 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132322496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.750 kcal (2) G-P(sol) polarization free energy of solvation -31.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds