Wall clock time and date at job start Tue Mar 31 2020 15:54:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.58310 * 2 1 4 4 C 1.53189 * 109.58826 * 120.27619 * 2 1 3 5 5 C 1.53033 * 109.31690 * 174.42485 * 4 2 1 6 6 C 1.53039 * 109.54087 * 298.64016 * 5 4 2 7 7 H 1.09001 * 109.50575 * 181.31382 * 6 5 4 8 8 N 1.46504 * 109.49590 * 301.41315 * 6 5 4 9 9 C 1.34780 * 120.00007 * 204.99971 * 8 6 5 10 10 O 1.21276 * 120.00138 * 359.97438 * 9 8 6 11 11 C 1.50696 * 119.99719 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.46933 * 179.97438 * 11 9 8 13 13 C 1.53003 * 109.47190 * 180.02562 * 12 11 9 14 14 C 1.53001 * 109.47190 * 179.97438 * 13 12 11 15 15 F 1.39907 * 109.47231 * 59.99816 * 14 13 12 16 16 F 1.39900 * 109.47067 * 179.97438 * 14 13 12 17 17 F 1.39894 * 109.47062 * 300.00086 * 14 13 12 18 18 C 1.53199 * 109.31479 * 61.35861 * 6 5 4 19 19 N 1.46920 * 109.58920 * 239.71310 * 2 1 3 20 20 C 1.36937 * 120.63511 * 6.60099 * 19 2 1 21 21 H 1.07998 * 119.99392 * 330.22743 * 20 19 2 22 22 C 1.38804 * 120.00464 * 150.22504 * 20 19 2 23 23 N 1.31626 * 120.00007 * 344.61315 * 22 20 19 24 24 Si 1.86797 * 120.00220 * 164.61293 * 22 20 19 25 25 H 1.48500 * 109.47235 * 90.00333 * 24 22 20 26 26 H 1.48503 * 109.47204 * 209.99982 * 24 22 20 27 27 H 1.48495 * 109.47002 * 329.99838 * 24 22 20 28 28 H 1.08998 * 109.47220 * 300.00274 * 1 2 3 29 29 H 1.09005 * 109.46603 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47050 * 60.00567 * 1 2 3 31 31 H 1.08997 * 109.50089 * 294.37953 * 4 2 1 32 32 H 1.09003 * 109.49608 * 54.44164 * 4 2 1 33 33 H 1.09006 * 109.45969 * 58.65385 * 5 4 2 34 34 H 1.09002 * 109.46823 * 178.62885 * 5 4 2 35 35 H 0.96998 * 120.00022 * 24.99551 * 8 6 5 36 36 H 1.08999 * 109.47369 * 299.99580 * 11 9 8 37 37 H 1.08992 * 109.47554 * 59.99712 * 11 9 8 38 38 H 1.09005 * 109.47212 * 299.99971 * 12 11 9 39 39 H 1.09002 * 109.47229 * 60.00117 * 12 11 9 40 40 H 1.08999 * 109.47241 * 299.99691 * 13 12 11 41 41 H 1.08992 * 109.46923 * 59.99829 * 13 12 11 42 42 H 1.08994 * 109.58126 * 65.15458 * 18 6 5 43 43 H 1.08994 * 109.58734 * 185.58099 * 18 6 5 44 44 H 0.96998 * 120.00060 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0270 0.0000 4 6 2.0436 -0.7276 1.2464 5 6 3.5674 -0.8463 1.1714 6 6 3.9570 -1.6656 -0.0611 7 1 5.0413 -1.7695 -0.1012 8 7 3.3406 -2.9923 0.0188 9 6 3.8973 -4.0342 -0.6301 10 8 4.9081 -3.8734 -1.2806 11 6 3.2636 -5.3989 -0.5474 12 6 4.0868 -6.3940 -1.3676 13 6 3.4431 -7.7796 -1.2842 14 6 4.2660 -8.7746 -2.1049 15 9 5.5682 -8.8340 -1.5967 16 9 3.6777 -10.0415 -2.0281 17 9 4.3051 -8.3582 -3.4399 18 6 3.4651 -0.9486 -1.3224 19 7 2.0226 -0.6981 -1.1952 20 6 1.1538 -1.1106 -2.1701 21 1 0.1396 -1.3771 -1.9118 22 6 1.5766 -1.1860 -3.4900 23 7 2.6891 -0.5876 -3.8599 24 14 0.5670 -2.1369 -4.7413 25 1 -0.4242 -1.2280 -5.3712 26 1 1.4662 -2.6891 -5.7862 27 1 -0.1436 -3.2495 -4.0614 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 -0.8900 31 1 1.7660 -0.1640 2.1370 32 1 1.6026 -1.7233 1.2939 33 1 4.0061 0.1490 1.0992 34 1 3.9378 -1.3421 2.0687 35 1 2.5320 -3.1208 0.5388 36 1 3.2327 -5.7228 0.4929 37 1 2.2493 -5.3532 -0.9438 38 1 4.1173 -6.0700 -2.4080 39 1 5.1013 -6.4399 -0.9715 40 1 3.4123 -8.1039 -0.2440 41 1 2.4289 -7.7333 -1.6805 42 1 3.9903 0.0002 -1.4316 43 1 3.6519 -1.5745 -2.1950 44 1 2.9844 -0.6400 -4.7824 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132322496.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:34 Heat of formation + Delta-G solvation = -211.945487 kcal Electronic energy + Delta-G solvation = -28719.035833 eV Core-core repulsion = 24255.186764 eV Total energy + Delta-G solvation = -4463.849069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -51.06956 -48.57836 -48.56110 -40.96529 -39.20513 -36.02965 -35.60149 -34.46522 -32.36015 -31.73127 -30.30628 -27.82725 -26.77342 -25.40273 -23.86942 -22.94771 -22.06458 -21.43393 -20.32151 -19.52528 -19.27088 -18.71640 -18.17383 -17.61357 -17.06997 -16.85546 -16.36157 -15.81756 -15.59196 -15.48261 -15.43993 -15.08332 -14.98262 -14.88152 -14.72989 -14.71824 -14.54827 -14.37543 -14.08135 -13.72732 -13.49164 -13.05182 -12.90779 -12.86646 -12.78703 -12.59430 -12.48706 -12.42201 -12.34026 -12.09791 -12.05149 -11.81478 -11.54795 -11.18713 -11.02211 -10.72413 -10.49488 -9.84890 -8.54395 -7.80149 -5.25974 1.42657 1.44905 1.52702 1.82469 1.87230 2.45291 2.52556 2.91975 3.09291 3.13232 3.36265 3.65843 3.80211 3.98079 4.06475 4.07476 4.13746 4.21151 4.38789 4.50313 4.54309 4.58586 4.68201 4.73220 4.78756 4.86418 4.99491 5.05587 5.07566 5.14061 5.15497 5.23053 5.30583 5.36154 5.59982 5.64394 5.73820 5.76586 5.82560 6.46457 6.81427 7.20893 7.52257 7.95393 8.46981 9.25330 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.012857 B = 0.003876 C = 0.003315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2177.351371 B = 7221.926396 C = 8443.841700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.153 3.847 3 H 0.007 0.993 4 C -0.117 4.117 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.059 0.941 8 N -0.693 5.693 9 C 0.499 3.501 10 O -0.600 6.600 11 C -0.125 4.125 12 C -0.108 4.108 13 C -0.153 4.153 14 C 0.446 3.554 15 F -0.193 7.193 16 F -0.187 7.187 17 F -0.199 7.199 18 C 0.173 3.827 19 N -0.594 5.594 20 C -0.234 4.234 21 H 0.080 0.920 22 C -0.056 4.056 23 N -0.940 5.940 24 Si 0.949 3.051 25 H -0.287 1.287 26 H -0.308 1.308 27 H -0.259 1.259 28 H 0.074 0.926 29 H 0.055 0.945 30 H 0.032 0.968 31 H 0.088 0.912 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.409 0.591 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.049 0.951 39 H 0.071 0.929 40 H 0.145 0.855 41 H 0.129 0.871 42 H -0.012 1.012 43 H 0.045 0.955 44 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.441 -12.968 14.576 19.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.047 3.953 3 H 0.025 0.975 4 C -0.156 4.156 5 C -0.148 4.148 6 C 0.021 3.979 7 H 0.077 0.923 8 N -0.344 5.344 9 C 0.287 3.713 10 O -0.481 6.481 11 C -0.165 4.165 12 C -0.146 4.146 13 C -0.191 4.191 14 C 0.392 3.608 15 F -0.174 7.174 16 F -0.169 7.169 17 F -0.181 7.181 18 C 0.046 3.954 19 N -0.318 5.318 20 C -0.365 4.365 21 H 0.097 0.903 22 C -0.251 4.251 23 N -0.587 5.587 24 Si 0.778 3.222 25 H -0.214 1.214 26 H -0.236 1.236 27 H -0.183 1.183 28 H 0.093 0.907 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.246 0.754 36 H 0.155 0.845 37 H 0.129 0.871 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.163 0.837 41 H 0.148 0.852 42 H 0.006 0.994 43 H 0.063 0.937 44 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -1.687 -12.852 13.974 19.060 hybrid contribution -0.033 -0.093 -1.778 1.780 sum -1.720 -12.945 12.196 17.868 Atomic orbital electron populations 1.21721 0.94567 1.01555 1.00679 1.20777 0.94258 0.93024 0.87218 0.97501 1.21936 0.94549 1.01308 0.97799 1.21649 0.97405 0.99631 0.96101 1.21391 0.96103 0.83159 0.97236 0.92252 1.45761 1.29685 1.07653 1.51273 1.21363 0.84039 0.88042 0.77887 1.90676 1.28125 1.86375 1.42963 1.21590 1.00784 0.89341 1.04747 1.21227 0.99958 0.92456 1.00979 1.22929 1.00574 0.92059 1.03498 1.21036 0.79131 0.81744 0.78846 1.93169 1.40748 1.96593 1.86912 1.93176 1.83758 1.43760 1.96181 1.93176 1.96535 1.90102 1.38251 1.20822 0.84241 0.94951 0.95370 1.44263 1.02189 1.65531 1.19818 1.19422 0.95382 1.35493 0.86195 0.90287 1.25784 0.98884 1.01320 0.99101 1.70182 1.26065 1.46352 1.16106 0.85540 0.77851 0.79371 0.79393 1.21412 1.23598 1.18323 0.90709 0.92546 0.94871 0.89345 0.91214 0.91559 0.89484 0.75352 0.84474 0.87097 0.93162 0.91000 0.83702 0.85249 0.99371 0.93689 0.95015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.95 71.98 0.57 -3.52 16 2 C 0.15 5.53 3.49 44.97 0.16 5.69 16 3 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 4 C -0.12 -3.05 5.21 30.67 0.16 -2.89 16 5 C -0.11 -3.01 5.59 30.62 0.17 -2.84 16 6 C 0.13 4.68 2.81 45.07 0.13 4.80 16 7 H 0.06 2.35 7.58 -2.39 -0.02 2.33 16 8 N -0.69 -21.76 4.92 -442.15 -2.18 -23.94 16 9 C 0.50 16.76 7.80 87.66 0.68 17.45 16 10 O -0.60 -26.67 15.64 -3.02 -0.05 -26.71 16 11 C -0.13 -2.63 5.70 29.85 0.17 -2.46 16 12 C -0.11 -2.46 4.26 30.60 0.13 -2.33 16 13 C -0.15 -2.25 5.26 30.60 0.16 -2.09 16 14 C 0.45 9.15 3.16 71.98 0.23 9.38 16 15 F -0.19 -4.43 16.80 44.97 0.76 -3.68 16 16 F -0.19 -3.72 17.32 44.97 0.78 -2.94 16 17 F -0.20 -5.18 16.80 44.97 0.76 -4.43 16 18 C 0.17 8.45 4.88 86.36 0.42 8.87 16 19 N -0.59 -27.58 2.91 -675.16 -1.97 -29.55 16 20 C -0.23 -12.05 8.57 84.03 0.72 -11.33 16 21 H 0.08 3.83 6.23 -2.91 -0.02 3.81 16 22 C -0.06 -3.15 4.94 84.86 0.42 -2.73 16 23 N -0.94 -57.93 11.24 21.65 0.24 -57.69 16 24 Si 0.95 45.29 29.58 68.60 2.03 47.31 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 26 H -0.31 -15.54 7.11 99.48 0.71 -14.83 16 27 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.06 1.75 7.43 -2.38 -0.02 1.73 16 30 H 0.03 1.22 7.64 -2.39 -0.02 1.20 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.07 1.65 6.40 -2.39 -0.02 1.64 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.41 10.26 6.77 -92.71 -0.63 9.64 16 36 H 0.14 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.11 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.50 7.76 -2.38 -0.02 1.48 16 39 H 0.07 1.78 7.76 -2.39 -0.02 1.77 16 40 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 41 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 42 H -0.01 -0.63 8.14 -2.39 -0.02 -0.65 16 43 H 0.04 2.65 6.16 -2.39 -0.01 2.63 16 44 H 0.24 14.79 8.31 -92.71 -0.77 14.02 16 Total: -1.00 -75.27 359.60 4.88 -70.39 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: 0.39 Total: 15.24 kcal Atomic # 6 Polarization: 11.87 SS G_CDS: 4.12 Total: 15.99 kcal Atomic # 7 Polarization: -107.27 SS G_CDS: -3.90 Total: -111.17 kcal Atomic # 8 Polarization: -26.67 SS G_CDS: -0.05 Total: -26.71 kcal Atomic # 9 Polarization: -13.33 SS G_CDS: 2.29 Total: -11.04 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.31 kcal Total: -75.27 4.88 -70.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132322496.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.559 kcal (2) G-P(sol) polarization free energy of solvation -75.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -216.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds