Wall clock time and date at job start Tue Mar 31 2020 15:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.70146 * 2 1 4 4 C 1.53191 * 109.58758 * 239.64264 * 2 1 3 5 5 C 1.53045 * 109.34050 * 185.59781 * 4 2 1 6 6 C 1.53039 * 109.53823 * 61.34459 * 5 4 2 7 7 H 1.09000 * 109.49828 * 58.58957 * 6 5 4 8 8 N 1.46497 * 109.49467 * 178.68838 * 6 5 4 9 9 C 1.34778 * 119.99810 * 205.00303 * 8 6 5 10 10 O 1.21284 * 120.00216 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00183 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.47161 * 300.00146 * 11 9 8 13 13 C 1.53007 * 109.46970 * 59.99914 * 11 9 8 14 14 C 1.53002 * 109.47391 * 179.97438 * 11 9 8 15 15 F 1.39907 * 109.46462 * 59.99910 * 14 11 9 16 16 F 1.39898 * 109.47119 * 179.97438 * 14 11 9 17 17 F 1.39897 * 109.47362 * 300.00447 * 14 11 9 18 18 C 1.53192 * 109.31284 * 298.63571 * 6 5 4 19 19 N 1.46924 * 108.77382 * 54.63918 * 18 6 5 20 20 C 1.36934 * 120.63374 * 126.39250 * 19 18 6 21 21 H 1.07998 * 120.00219 * 209.01389 * 20 19 18 22 22 C 1.38816 * 120.00181 * 29.01056 * 20 19 18 23 23 N 1.31623 * 119.99748 * 15.02280 * 22 20 19 24 24 Si 1.86801 * 120.00255 * 195.02855 * 22 20 19 25 25 H 1.48496 * 109.47323 * 89.99826 * 24 22 20 26 26 H 1.48501 * 109.46818 * 209.99924 * 24 22 20 27 27 H 1.48500 * 109.46759 * 329.99662 * 24 22 20 28 28 H 1.08994 * 109.47297 * 180.35590 * 1 2 3 29 29 H 1.08991 * 109.47066 * 300.36294 * 1 2 3 30 30 H 1.09005 * 109.46476 * 60.35601 * 1 2 3 31 31 H 1.08997 * 109.49855 * 65.62530 * 4 2 1 32 32 H 1.09002 * 109.49467 * 305.56287 * 4 2 1 33 33 H 1.08994 * 109.45759 * 181.37075 * 5 4 2 34 34 H 1.09004 * 109.45710 * 301.32611 * 5 4 2 35 35 H 0.96995 * 120.00545 * 24.99519 * 8 6 5 36 36 H 1.08997 * 109.47304 * 59.99485 * 12 11 9 37 37 H 1.08999 * 109.46800 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.46539 * 299.99475 * 12 11 9 39 39 H 1.08996 * 109.46986 * 59.99789 * 13 11 9 40 40 H 1.08995 * 109.47124 * 180.02562 * 13 11 9 41 41 H 1.08997 * 109.46876 * 300.00136 * 13 11 9 42 42 H 1.09001 * 109.58853 * 174.42295 * 18 6 5 43 43 H 1.08997 * 109.58604 * 294.70658 * 18 6 5 44 44 H 0.96998 * 119.99441 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8488 -1.1705 6 6 3.9569 -1.6664 0.0632 7 1 3.4978 -2.6534 0.0053 8 7 5.4141 -1.8067 0.1169 9 6 5.9672 -2.8496 0.7670 10 8 5.2586 -3.6719 1.3081 11 6 7.4663 -2.9943 0.8218 12 6 8.0199 -3.1094 -0.5999 13 6 8.0723 -1.7679 1.5073 14 6 7.8288 -4.2520 1.6142 15 9 7.2746 -5.3735 0.9878 16 9 9.2204 -4.3865 1.6645 17 9 7.3227 -4.1462 2.9141 18 6 3.4657 -0.9471 1.3234 19 7 2.0233 -0.6991 1.1945 20 6 1.1545 -1.1120 2.1691 21 1 0.1366 -1.3661 1.9128 22 6 1.5821 -1.2041 3.4865 23 7 2.7057 -0.6264 3.8556 24 14 0.5630 -2.1480 4.7355 25 1 0.9965 -3.5681 4.7564 26 1 0.7544 -1.5522 6.0822 27 1 -0.8720 -2.0739 4.3608 28 1 -0.3633 -1.0276 0.0064 29 1 -0.3633 0.5194 0.8866 30 1 -0.3632 0.5083 -0.8932 31 1 1.7661 -0.1669 -2.1368 32 1 1.6025 -1.7251 -1.2915 33 1 3.9373 -1.3459 -2.0672 34 1 4.0067 0.1464 -1.1000 35 1 5.9809 -1.1490 -0.3156 36 1 7.7616 -2.2132 -1.1640 37 1 9.1040 -3.2144 -0.5602 38 1 7.5882 -3.9831 -1.0882 39 1 7.6779 -1.6859 2.5201 40 1 9.1565 -1.8723 1.5465 41 1 7.8140 -0.8717 0.9432 42 1 3.6524 -1.5718 2.1969 43 1 3.9933 0.0004 1.4324 44 1 3.0046 -0.6910 4.7761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132445990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:50 Heat of formation + Delta-G solvation = -179.321001 kcal Electronic energy + Delta-G solvation = -29855.284613 eV Core-core repulsion = 25392.850248 eV Total energy + Delta-G solvation = -4462.434365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 11.08 seconds Orbital eigenvalues (eV) -49.99613 -47.51213 -47.35767 -39.97736 -37.80183 -35.35920 -34.49021 -32.81742 -30.60979 -29.82816 -27.73134 -26.20648 -26.11596 -25.05137 -23.03028 -22.21500 -20.68181 -19.87811 -19.31490 -18.49672 -18.19793 -17.52081 -16.43499 -16.23696 -15.53391 -15.12491 -14.82402 -14.50432 -14.12528 -13.96292 -13.83294 -13.80713 -13.70452 -13.58777 -13.55262 -13.41235 -13.37050 -13.01416 -12.70699 -12.51563 -12.42544 -12.39590 -11.90418 -11.63040 -11.44738 -11.31616 -11.13891 -10.88270 -10.71117 -10.55746 -10.40708 -10.26882 -9.96244 -9.80475 -9.48792 -9.43356 -8.63202 -8.41228 -6.62227 -5.73490 -3.18094 2.63525 2.76269 3.20690 3.44618 3.50698 3.52563 3.71148 4.04316 4.17642 4.54025 4.62002 4.70390 4.79408 5.19316 5.29258 5.31659 5.34886 5.37673 5.41650 5.48487 5.55242 5.63377 5.72600 5.89127 5.93697 6.06397 6.24430 6.27089 6.36803 6.42746 6.45777 6.60161 6.69633 6.84182 7.02590 7.11063 7.28192 7.72142 7.73762 7.87605 8.41349 8.51035 9.25104 9.89182 10.43684 11.34564 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.004739 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.412803 B = 5906.403538 C = 7234.005459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.709 5.709 9 C 0.523 3.477 10 O -0.511 6.511 11 C -0.133 4.133 12 C -0.145 4.145 13 C -0.147 4.147 14 C 0.474 3.526 15 F -0.174 7.174 16 F -0.185 7.185 17 F -0.168 7.168 18 C 0.168 3.832 19 N -0.583 5.583 20 C -0.254 4.254 21 H 0.071 0.929 22 C 0.007 3.993 23 N -0.900 5.900 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.279 1.279 28 H 0.053 0.947 29 H 0.061 0.939 30 H 0.038 0.962 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.393 0.607 36 H 0.082 0.918 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.017 0.983 44 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.150 -0.716 -11.288 16.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.102 0.898 8 N -0.360 5.360 9 C 0.305 3.695 10 O -0.385 6.385 11 C -0.138 4.138 12 C -0.202 4.202 13 C -0.205 4.205 14 C 0.420 3.580 15 F -0.155 7.155 16 F -0.166 7.166 17 F -0.149 7.149 18 C 0.041 3.959 19 N -0.306 5.306 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.544 5.544 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.204 1.204 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.102 0.898 42 H 0.114 0.886 43 H 0.035 0.965 44 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 11.651 -1.331 -10.686 15.866 hybrid contribution 0.016 -0.349 0.659 0.745 sum 11.667 -1.679 -10.028 15.476 Atomic orbital electron populations 1.21797 0.95962 1.01459 1.00168 1.20492 0.93101 0.93537 0.87030 0.95747 1.22051 0.94201 1.01385 0.98971 1.21677 0.97521 0.99592 0.96591 1.22086 0.77113 1.01136 0.98541 0.89830 1.45910 1.08822 1.26048 1.55179 1.19530 0.87745 0.82559 0.79642 1.90854 1.62362 1.41637 1.43669 1.22130 0.97366 0.95039 0.99218 1.21916 1.02291 1.04461 0.91578 1.21935 1.01657 0.94641 1.02219 1.19781 0.73880 0.85375 0.78997 1.93192 1.85283 1.54932 1.82087 1.93143 1.30543 1.96425 1.96519 1.93235 1.86943 1.96091 1.38652 1.21086 0.83617 0.96912 0.94317 1.44017 1.02605 1.64735 1.19271 1.19148 0.94697 1.38350 0.86114 0.91157 1.25069 0.97738 0.99389 0.97033 1.69985 1.23268 1.44272 1.16905 0.86325 0.79713 0.80120 0.80824 1.21294 1.21806 1.20441 0.92765 0.92006 0.94347 0.92637 0.92044 0.93046 0.92243 0.77376 0.89878 0.90205 0.90724 0.90176 0.90287 0.89785 0.88586 0.96498 0.93717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.94 37.16 0.30 -2.22 16 2 C 0.16 3.30 3.50 -67.59 -0.24 3.06 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.13 -2.07 5.37 -26.61 -0.14 -2.21 16 5 C -0.12 -1.76 5.36 -26.69 -0.14 -1.90 16 6 C 0.12 2.16 2.60 -67.81 -0.18 1.98 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.41 16 8 N -0.71 -10.69 4.87 -53.69 -0.26 -10.95 16 9 C 0.52 8.77 6.22 -10.98 -0.07 8.70 16 10 O -0.51 -11.28 14.50 5.55 0.08 -11.20 16 11 C -0.13 -1.67 0.44 -155.65 -0.07 -1.73 16 12 C -0.15 -1.28 8.13 37.16 0.30 -0.98 16 13 C -0.15 -1.53 8.13 37.16 0.30 -1.22 16 14 C 0.47 7.00 1.95 37.16 0.07 7.07 16 15 F -0.17 -2.82 15.88 2.25 0.04 -2.78 16 16 F -0.18 -2.34 16.28 2.25 0.04 -2.30 16 17 F -0.17 -2.96 15.88 2.25 0.04 -2.93 16 18 C 0.17 3.95 4.87 -3.71 -0.02 3.93 16 19 N -0.58 -14.26 2.99 -164.77 -0.49 -14.76 16 20 C -0.25 -6.90 8.61 -15.06 -0.13 -7.03 16 21 H 0.07 1.87 6.20 -52.49 -0.33 1.54 16 22 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 23 N -0.90 -26.51 11.14 55.49 0.62 -25.89 16 24 Si 0.90 22.54 29.58 -169.99 -5.03 17.51 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.05 1.02 7.40 -51.93 -0.38 0.64 16 29 H 0.06 1.24 7.66 -51.93 -0.40 0.84 16 30 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.39 4.40 7.44 -40.82 -0.30 4.10 16 36 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 37 H 0.08 0.57 7.80 -51.93 -0.41 0.16 16 38 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 39 H 0.08 1.00 7.80 -51.93 -0.41 0.60 16 40 H 0.08 0.65 7.80 -51.93 -0.41 0.24 16 41 H 0.08 0.70 7.56 -51.93 -0.39 0.31 16 42 H 0.10 2.71 6.06 -51.93 -0.31 2.39 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 354.47 15.07 5.34 5.34 Total: -1.00 -32.71 354.47 -6.35 -39.06 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -6.62 Total: 1.34 kcal Atomic # 6 Polarization: 7.65 SS G_CDS: -0.10 Total: 7.56 kcal Atomic # 7 Polarization: -51.46 SS G_CDS: -0.14 Total: -51.60 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 9 Polarization: -8.12 SS G_CDS: 0.11 Total: -8.01 kcal Atomic # 14 Polarization: 22.54 SS G_CDS: -5.03 Total: 17.51 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.71 -6.35 -39.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132445990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.262 kcal (2) G-P(sol) polarization free energy of solvation -32.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.059 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.08 seconds