Wall clock time and date at job start Tue Mar 31 2020 15:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.70146 * 2 1 4 4 C 1.53191 * 109.58758 * 239.64264 * 2 1 3 5 5 C 1.53045 * 109.34050 * 185.59781 * 4 2 1 6 6 C 1.53039 * 109.53823 * 61.34459 * 5 4 2 7 7 H 1.09000 * 109.49828 * 58.58957 * 6 5 4 8 8 N 1.46497 * 109.49467 * 178.68838 * 6 5 4 9 9 C 1.34778 * 119.99810 * 205.00303 * 8 6 5 10 10 O 1.21284 * 120.00216 * 359.97438 * 9 8 6 11 11 C 1.50702 * 120.00183 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.47161 * 300.00146 * 11 9 8 13 13 C 1.53007 * 109.46970 * 59.99914 * 11 9 8 14 14 C 1.53002 * 109.47391 * 179.97438 * 11 9 8 15 15 F 1.39907 * 109.46462 * 59.99910 * 14 11 9 16 16 F 1.39898 * 109.47119 * 179.97438 * 14 11 9 17 17 F 1.39897 * 109.47362 * 300.00447 * 14 11 9 18 18 C 1.53192 * 109.31284 * 298.63571 * 6 5 4 19 19 N 1.46924 * 108.77382 * 54.63918 * 18 6 5 20 20 C 1.36934 * 120.63374 * 126.39250 * 19 18 6 21 21 H 1.07998 * 120.00219 * 209.01389 * 20 19 18 22 22 C 1.38816 * 120.00181 * 29.01056 * 20 19 18 23 23 N 1.31623 * 119.99748 * 15.02280 * 22 20 19 24 24 Si 1.86801 * 120.00255 * 195.02855 * 22 20 19 25 25 H 1.48496 * 109.47323 * 89.99826 * 24 22 20 26 26 H 1.48501 * 109.46818 * 209.99924 * 24 22 20 27 27 H 1.48500 * 109.46759 * 329.99662 * 24 22 20 28 28 H 1.08994 * 109.47297 * 180.35590 * 1 2 3 29 29 H 1.08991 * 109.47066 * 300.36294 * 1 2 3 30 30 H 1.09005 * 109.46476 * 60.35601 * 1 2 3 31 31 H 1.08997 * 109.49855 * 65.62530 * 4 2 1 32 32 H 1.09002 * 109.49467 * 305.56287 * 4 2 1 33 33 H 1.08994 * 109.45759 * 181.37075 * 5 4 2 34 34 H 1.09004 * 109.45710 * 301.32611 * 5 4 2 35 35 H 0.96995 * 120.00545 * 24.99519 * 8 6 5 36 36 H 1.08997 * 109.47304 * 59.99485 * 12 11 9 37 37 H 1.08999 * 109.46800 * 180.02562 * 12 11 9 38 38 H 1.08999 * 109.46539 * 299.99475 * 12 11 9 39 39 H 1.08996 * 109.46986 * 59.99789 * 13 11 9 40 40 H 1.08995 * 109.47124 * 180.02562 * 13 11 9 41 41 H 1.08997 * 109.46876 * 300.00136 * 13 11 9 42 42 H 1.09001 * 109.58853 * 174.42295 * 18 6 5 43 43 H 1.08997 * 109.58604 * 294.70658 * 18 6 5 44 44 H 0.96998 * 119.99441 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0436 -0.7294 -1.2454 5 6 3.5675 -0.8488 -1.1705 6 6 3.9569 -1.6664 0.0632 7 1 3.4978 -2.6534 0.0053 8 7 5.4141 -1.8067 0.1169 9 6 5.9672 -2.8496 0.7670 10 8 5.2586 -3.6719 1.3081 11 6 7.4663 -2.9943 0.8218 12 6 8.0199 -3.1094 -0.5999 13 6 8.0723 -1.7679 1.5073 14 6 7.8288 -4.2520 1.6142 15 9 7.2746 -5.3735 0.9878 16 9 9.2204 -4.3865 1.6645 17 9 7.3227 -4.1462 2.9141 18 6 3.4657 -0.9471 1.3234 19 7 2.0233 -0.6991 1.1945 20 6 1.1545 -1.1120 2.1691 21 1 0.1366 -1.3661 1.9128 22 6 1.5821 -1.2041 3.4865 23 7 2.7057 -0.6264 3.8556 24 14 0.5630 -2.1480 4.7355 25 1 0.9965 -3.5681 4.7564 26 1 0.7544 -1.5522 6.0822 27 1 -0.8720 -2.0739 4.3608 28 1 -0.3633 -1.0276 0.0064 29 1 -0.3633 0.5194 0.8866 30 1 -0.3632 0.5083 -0.8932 31 1 1.7661 -0.1669 -2.1368 32 1 1.6025 -1.7251 -1.2915 33 1 3.9373 -1.3459 -2.0672 34 1 4.0067 0.1464 -1.1000 35 1 5.9809 -1.1490 -0.3156 36 1 7.7616 -2.2132 -1.1640 37 1 9.1040 -3.2144 -0.5602 38 1 7.5882 -3.9831 -1.0882 39 1 7.6779 -1.6859 2.5201 40 1 9.1565 -1.8723 1.5465 41 1 7.8140 -0.8717 0.9432 42 1 3.6524 -1.5718 2.1969 43 1 3.9933 0.0004 1.4324 44 1 3.0046 -0.6910 4.7761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132445990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:54:44 Heat of formation + Delta-G solvation = -201.245923 kcal Electronic energy + Delta-G solvation = -29856.235349 eV Core-core repulsion = 25392.850248 eV Total energy + Delta-G solvation = -4463.385101 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -51.18587 -48.66080 -48.63484 -41.33678 -39.37342 -36.50014 -36.03352 -34.64029 -32.09330 -31.67365 -28.48399 -27.79654 -27.23095 -26.83241 -24.43364 -23.77271 -22.16122 -21.29938 -20.82327 -19.71768 -19.40654 -18.71477 -18.32659 -17.48012 -17.24339 -16.57842 -16.20260 -15.84962 -15.66046 -15.38814 -15.35496 -15.04580 -15.02623 -14.94836 -14.82278 -14.75782 -14.52808 -14.30250 -14.12258 -13.80957 -13.51396 -13.42876 -13.18548 -13.07351 -12.75337 -12.74035 -12.58344 -12.46805 -12.31804 -12.26086 -12.11094 -11.96316 -11.64678 -11.41068 -11.14018 -10.86813 -10.54310 -10.13637 -8.62075 -7.85631 -5.30849 1.38297 1.44082 1.45339 1.49101 1.51688 1.98275 2.49044 2.59231 2.95512 3.06922 3.31272 3.56036 3.64726 3.75528 3.77882 3.98362 4.11335 4.26940 4.40078 4.54758 4.57443 4.62457 4.64897 4.68073 4.72585 4.81196 4.90410 5.01930 5.04924 5.09059 5.11000 5.20275 5.30409 5.34421 5.44310 5.55591 5.62957 5.70914 5.81697 6.39224 6.48709 7.14650 7.19869 7.91139 8.38728 9.18871 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013980 B = 0.004739 C = 0.003870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.412803 B = 5906.403538 C = 7234.005459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.153 3.847 3 H 0.025 0.975 4 C -0.119 4.119 5 C -0.106 4.106 6 C 0.131 3.869 7 H 0.049 0.951 8 N -0.692 5.692 9 C 0.516 3.484 10 O -0.574 6.574 11 C -0.120 4.120 12 C -0.142 4.142 13 C -0.147 4.147 14 C 0.464 3.536 15 F -0.186 7.186 16 F -0.170 7.170 17 F -0.193 7.193 18 C 0.178 3.822 19 N -0.603 5.603 20 C -0.248 4.248 21 H 0.074 0.926 22 C -0.053 4.053 23 N -0.931 5.931 24 Si 0.951 3.049 25 H -0.300 1.300 26 H -0.294 1.294 27 H -0.261 1.261 28 H 0.043 0.957 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.097 0.903 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.078 0.922 35 H 0.417 0.583 36 H 0.113 0.887 37 H 0.104 0.896 38 H 0.065 0.935 39 H 0.049 0.951 40 H 0.108 0.892 41 H 0.110 0.890 42 H 0.041 0.959 43 H 0.002 0.998 44 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.195 0.537 -14.731 19.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.048 3.952 3 H 0.042 0.958 4 C -0.158 4.158 5 C -0.144 4.144 6 C 0.025 3.975 7 H 0.068 0.932 8 N -0.344 5.344 9 C 0.301 3.699 10 O -0.452 6.452 11 C -0.125 4.125 12 C -0.199 4.199 13 C -0.204 4.204 14 C 0.410 3.590 15 F -0.167 7.167 16 F -0.151 7.151 17 F -0.174 7.174 18 C 0.051 3.949 19 N -0.328 5.328 20 C -0.379 4.379 21 H 0.091 0.909 22 C -0.248 4.248 23 N -0.577 5.577 24 Si 0.781 3.219 25 H -0.228 1.228 26 H -0.220 1.220 27 H -0.185 1.185 28 H 0.063 0.937 29 H 0.056 0.944 30 H 0.098 0.902 31 H 0.115 0.885 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.096 0.904 35 H 0.255 0.745 36 H 0.132 0.868 37 H 0.123 0.877 38 H 0.084 0.916 39 H 0.068 0.932 40 H 0.127 0.873 41 H 0.129 0.871 42 H 0.059 0.941 43 H 0.020 0.980 44 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 12.710 -0.037 -14.191 19.051 hybrid contribution -0.308 -0.732 1.698 1.874 sum 12.402 -0.769 -12.494 17.621 Atomic orbital electron populations 1.21738 0.94965 1.01025 1.01036 1.20820 0.94152 0.93508 0.86697 0.95757 1.21959 0.94798 1.00778 0.98296 1.21651 0.96921 1.00138 0.95693 1.21577 0.78800 0.99212 0.97942 0.93223 1.45649 1.07774 1.26247 1.54685 1.20342 0.89609 0.81776 0.78191 1.90830 1.64358 1.43931 1.46086 1.22165 0.94024 0.94620 1.01688 1.22050 1.03596 1.05668 0.88603 1.22040 1.03198 0.94487 1.00668 1.20250 0.74387 0.86090 0.78288 1.93162 1.85626 1.55826 1.82132 1.93163 1.29120 1.96415 1.96410 1.93185 1.87438 1.96215 1.40581 1.20778 0.83710 0.95456 0.94924 1.44318 1.02604 1.65660 1.20175 1.19466 0.95154 1.36510 0.86728 0.90857 1.25739 0.99039 1.01113 0.98909 1.70134 1.24882 1.46299 1.16411 0.85487 0.79487 0.77986 0.78941 1.22777 1.22042 1.18503 0.93744 0.94432 0.90222 0.88472 0.93167 0.89264 0.90369 0.74530 0.86799 0.87691 0.91550 0.93162 0.87337 0.87147 0.94058 0.97959 0.94753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.59 7.94 71.98 0.57 -4.02 16 2 C 0.15 5.88 3.50 44.97 0.16 6.04 16 3 H 0.02 0.95 8.14 -2.38 -0.02 0.94 16 4 C -0.12 -3.48 5.37 30.67 0.16 -3.32 16 5 C -0.11 -2.83 5.36 30.62 0.16 -2.66 16 6 C 0.13 4.80 2.60 45.07 0.12 4.91 16 7 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 8 N -0.69 -19.95 4.87 -442.16 -2.15 -22.10 16 9 C 0.52 17.38 6.22 87.66 0.54 17.93 16 10 O -0.57 -26.70 14.50 -3.04 -0.04 -26.74 16 11 C -0.12 -2.85 0.44 -52.92 -0.02 -2.88 16 12 C -0.14 -1.99 8.13 71.98 0.59 -1.41 16 13 C -0.15 -2.74 8.13 71.98 0.58 -2.16 16 14 C 0.46 13.70 1.95 71.98 0.14 13.84 16 15 F -0.19 -6.15 15.88 44.97 0.71 -5.44 16 16 F -0.17 -4.06 16.28 44.97 0.73 -3.33 16 17 F -0.19 -7.16 15.88 44.97 0.71 -6.45 16 18 C 0.18 8.67 4.87 86.36 0.42 9.09 16 19 N -0.60 -30.01 2.99 -675.21 -2.02 -32.03 16 20 C -0.25 -13.87 8.61 84.03 0.72 -13.15 16 21 H 0.07 3.97 6.20 -2.91 -0.02 3.95 16 22 C -0.05 -3.10 4.96 84.86 0.42 -2.68 16 23 N -0.93 -57.69 11.14 21.65 0.24 -57.45 16 24 Si 0.95 48.18 29.58 68.60 2.03 50.21 16 25 H -0.30 -15.70 7.11 99.48 0.71 -14.99 16 26 H -0.29 -14.84 7.11 99.48 0.71 -14.13 16 27 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 28 H 0.04 1.63 7.40 -2.39 -0.02 1.61 16 29 H 0.04 1.47 7.66 -2.39 -0.02 1.45 16 30 H 0.08 2.13 8.14 -2.38 -0.02 2.11 16 31 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 32 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 34 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 35 H 0.42 7.88 7.44 -92.71 -0.69 7.19 16 36 H 0.11 0.91 7.56 -2.39 -0.02 0.89 16 37 H 0.10 1.01 7.80 -2.39 -0.02 0.99 16 38 H 0.07 1.09 7.80 -2.39 -0.02 1.07 16 39 H 0.05 1.26 7.80 -2.39 -0.02 1.24 16 40 H 0.11 1.41 7.80 -2.39 -0.02 1.39 16 41 H 0.11 1.46 7.56 -2.39 -0.02 1.44 16 42 H 0.04 2.47 6.06 -2.39 -0.01 2.45 16 43 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 44 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 Total: -1.00 -79.10 354.47 5.11 -73.98 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.33 Total: 9.79 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 4.57 Total: 19.54 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -3.93 Total: -111.57 kcal Atomic # 8 Polarization: -26.70 SS G_CDS: -0.04 Total: -26.74 kcal Atomic # 9 Polarization: -17.37 SS G_CDS: 2.16 Total: -15.21 kcal Atomic # 14 Polarization: 48.18 SS G_CDS: 2.03 Total: 50.21 kcal Total: -79.10 5.11 -73.98 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132445990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.262 kcal (2) G-P(sol) polarization free energy of solvation -79.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds