Wall clock time and date at job start Tue Mar 31 2020 15:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08997 * 109.58146 * 2 1 4 4 C 1.53186 * 109.58440 * 120.43087 * 2 1 3 5 5 C 1.53038 * 109.31234 * 174.42261 * 4 2 1 6 6 C 1.53041 * 109.53948 * 298.63351 * 5 4 2 7 7 H 1.09001 * 109.52449 * 301.39884 * 6 5 4 8 8 N 1.46496 * 109.50125 * 181.31827 * 6 5 4 9 9 C 1.34774 * 120.00548 * 155.16443 * 8 6 5 10 10 O 1.21281 * 119.99572 * 359.97438 * 9 8 6 11 11 C 1.50694 * 120.00236 * 180.02562 * 9 8 6 12 12 C 1.53002 * 109.46905 * 299.99492 * 11 9 8 13 13 C 1.53000 * 109.47686 * 59.99440 * 11 9 8 14 14 C 1.52999 * 109.47110 * 180.02562 * 11 9 8 15 15 F 1.39895 * 109.47548 * 59.99240 * 14 11 9 16 16 F 1.39904 * 109.47173 * 179.97438 * 14 11 9 17 17 F 1.39903 * 109.47028 * 299.99125 * 14 11 9 18 18 C 1.53191 * 109.31130 * 61.36325 * 6 5 4 19 19 N 1.46927 * 109.58408 * 239.71772 * 2 1 3 20 20 C 1.36936 * 120.63633 * 6.62750 * 19 2 1 21 21 H 1.07999 * 119.99780 * 330.14527 * 20 19 2 22 22 C 1.38808 * 120.00164 * 150.14018 * 20 19 2 23 23 N 1.31615 * 120.00041 * 344.49705 * 22 20 19 24 24 Si 1.86800 * 120.00125 * 164.50484 * 22 20 19 25 25 H 1.48505 * 109.46776 * 359.97438 * 24 22 20 26 26 H 1.48498 * 109.47647 * 119.99840 * 24 22 20 27 27 H 1.48498 * 109.47023 * 240.00188 * 24 22 20 28 28 H 1.09001 * 109.46886 * 180.27898 * 1 2 3 29 29 H 1.08998 * 109.47045 * 300.28182 * 1 2 3 30 30 H 1.09003 * 109.46890 * 60.28383 * 1 2 3 31 31 H 1.08998 * 109.49767 * 294.37066 * 4 2 1 32 32 H 1.08999 * 109.50386 * 54.43688 * 4 2 1 33 33 H 1.09004 * 109.46153 * 178.61458 * 5 4 2 34 34 H 1.08998 * 109.46005 * 58.65531 * 5 4 2 35 35 H 0.97008 * 119.99981 * 335.15811 * 8 6 5 36 36 H 1.08998 * 109.47425 * 60.00014 * 12 11 9 37 37 H 1.09002 * 109.47318 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47058 * 299.99927 * 12 11 9 39 39 H 1.09002 * 109.46934 * 59.99672 * 13 11 9 40 40 H 1.08992 * 109.47212 * 180.02562 * 13 11 9 41 41 H 1.08998 * 109.46744 * 300.00047 * 13 11 9 42 42 H 1.09000 * 109.58581 * 65.15568 * 18 6 5 43 43 H 1.09002 * 109.58593 * 185.57818 * 18 6 5 44 44 H 0.96998 * 119.99972 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0436 -0.7310 1.2444 5 6 3.5675 -0.8495 1.1690 6 6 3.9570 -1.6656 -0.0656 7 1 3.4988 -2.6531 -0.0090 8 7 5.4142 -1.8053 -0.1198 9 6 5.9678 -2.8454 -0.7741 10 8 5.2594 -3.6661 -1.3177 11 6 7.4668 -2.9893 -0.8293 12 6 8.0724 -1.7600 -1.5100 13 6 8.0204 -3.1098 0.5919 14 6 7.8298 -4.2436 -1.6267 15 9 7.3237 -4.1329 -2.9261 16 9 9.2215 -4.3769 -1.6784 17 9 7.2761 -5.3679 -1.0048 18 6 3.4651 -0.9452 -1.3249 19 7 2.0226 -0.6980 -1.1954 20 6 1.1538 -1.1099 -2.1705 21 1 0.1398 -1.3774 -1.9123 22 6 1.5764 -1.1836 -3.4906 23 7 2.6871 -0.5821 -3.8606 24 14 0.5686 -2.1362 -4.7422 25 1 -0.6264 -2.7155 -4.0776 26 1 0.1364 -1.2215 -5.8292 27 1 1.3950 -3.2293 -5.3143 28 1 -0.3633 -1.0277 0.0050 29 1 -0.3633 0.5182 0.8874 30 1 -0.3633 0.5094 -0.8926 31 1 1.7661 -0.1696 2.1365 32 1 1.6026 -1.7268 1.2894 33 1 3.9378 -1.3476 2.0651 34 1 4.0061 0.1459 1.0995 35 1 5.9809 -1.1490 0.3152 36 1 7.8138 -0.8661 -0.9424 37 1 9.1566 -1.8643 -1.5503 38 1 7.6780 -1.6742 -2.5225 39 1 7.5890 -3.9854 1.0769 40 1 9.1047 -3.2133 0.5519 41 1 7.7619 -2.2158 1.1595 42 1 3.9904 0.0038 -1.4316 43 1 3.6519 -1.5689 -2.1992 44 1 2.9826 -0.6339 -4.7830 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132445991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:06 Heat of formation + Delta-G solvation = -179.749374 kcal Electronic energy + Delta-G solvation = -29850.757408 eV Core-core repulsion = 25388.304467 eV Total energy + Delta-G solvation = -4462.452941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.99915 -47.51469 -47.36090 -39.98373 -37.80339 -35.36419 -34.49296 -32.81335 -30.60830 -29.84247 -27.73423 -26.20882 -26.11646 -25.04846 -23.03431 -22.22141 -20.68333 -19.88154 -19.31809 -18.50036 -18.20087 -17.52480 -16.43435 -16.24081 -15.53498 -15.12777 -14.82576 -14.50581 -14.12853 -13.96433 -13.83657 -13.80929 -13.70917 -13.59075 -13.55551 -13.41401 -13.37148 -13.01872 -12.71408 -12.51969 -12.42992 -12.40019 -11.90192 -11.63353 -11.45055 -11.31947 -11.13428 -10.89463 -10.71426 -10.56051 -10.40804 -10.26089 -9.96679 -9.81295 -9.48234 -9.43875 -8.63431 -8.42124 -6.61185 -5.74217 -3.18928 2.63179 2.75735 3.20205 3.43478 3.51792 3.52713 3.70860 4.03991 4.17273 4.53827 4.61670 4.70029 4.79059 5.18974 5.28977 5.31471 5.34609 5.37420 5.41342 5.48275 5.55022 5.62998 5.72324 5.88771 5.93644 6.06210 6.24374 6.26849 6.37048 6.42740 6.45673 6.60133 6.69333 6.83750 7.02977 7.11346 7.27486 7.70493 7.72606 7.87910 8.40767 8.50924 9.24705 9.88821 10.43955 11.34049 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013968 B = 0.004737 C = 0.003869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2004.055246 B = 5909.385892 C = 7235.665227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.115 4.115 6 C 0.116 3.884 7 H 0.084 0.916 8 N -0.709 5.709 9 C 0.523 3.477 10 O -0.511 6.511 11 C -0.133 4.133 12 C -0.147 4.147 13 C -0.145 4.145 14 C 0.474 3.526 15 F -0.168 7.168 16 F -0.185 7.185 17 F -0.174 7.174 18 C 0.169 3.831 19 N -0.583 5.583 20 C -0.254 4.254 21 H 0.070 0.930 22 C 0.007 3.993 23 N -0.899 5.899 24 Si 0.899 3.101 25 H -0.277 1.277 26 H -0.291 1.291 27 H -0.288 1.288 28 H 0.053 0.947 29 H 0.037 0.963 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.393 0.607 36 H 0.083 0.917 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.082 0.918 42 H 0.017 0.983 43 H 0.093 0.907 44 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.204 -0.818 11.323 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.154 4.154 6 C 0.011 3.989 7 H 0.102 0.898 8 N -0.360 5.360 9 C 0.305 3.695 10 O -0.385 6.385 11 C -0.138 4.138 12 C -0.205 4.205 13 C -0.202 4.202 14 C 0.420 3.580 15 F -0.149 7.149 16 F -0.166 7.166 17 F -0.155 7.155 18 C 0.042 3.958 19 N -0.306 5.306 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.192 4.192 23 N -0.543 5.543 24 Si 0.729 3.271 25 H -0.202 1.202 26 H -0.218 1.218 27 H -0.215 1.215 28 H 0.072 0.928 29 H 0.056 0.944 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.226 0.774 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.035 0.965 43 H 0.112 0.888 44 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 11.705 -1.438 10.725 15.941 hybrid contribution 0.027 -0.340 -0.677 0.758 sum 11.732 -1.777 10.049 15.549 Atomic orbital electron populations 1.21803 0.95975 1.01396 1.00225 1.20493 0.93120 0.93531 0.87032 0.95743 1.22044 0.94186 1.01384 0.98967 1.21675 0.97530 0.99595 0.96566 1.22084 0.77107 1.01148 0.98529 0.89819 1.45916 1.08823 1.26301 1.54931 1.19528 0.87749 0.82534 0.79659 1.90853 1.62381 1.41638 1.43666 1.22126 0.97356 0.95079 0.99189 1.21936 1.01671 0.94596 1.02258 1.21916 1.02293 1.04458 0.91578 1.19781 0.73887 0.85314 0.79053 1.93234 1.86950 1.96043 1.38703 1.93145 1.30533 1.96432 1.96518 1.93191 1.85297 1.54710 1.82285 1.21064 0.83706 0.96827 0.94227 1.44018 1.02576 1.64824 1.19205 1.19160 0.95076 1.38159 0.85918 0.91197 1.25080 0.97794 0.99214 0.97075 1.69998 1.24059 1.43578 1.16666 0.86282 0.79648 0.79715 0.81480 1.20211 1.21784 1.21459 0.92810 0.94360 0.91961 0.92632 0.92032 0.93036 0.92232 0.77368 0.89776 0.90281 0.90185 0.90713 0.90200 0.89883 0.96451 0.88844 0.93770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.95 37.16 0.30 -2.23 16 2 C 0.16 3.29 3.50 -67.60 -0.24 3.06 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.06 5.37 -26.62 -0.14 -2.21 16 5 C -0.12 -1.75 5.35 -26.69 -0.14 -1.90 16 6 C 0.12 2.15 2.60 -67.81 -0.18 1.98 16 7 H 0.08 1.80 7.58 -51.93 -0.39 1.40 16 8 N -0.71 -10.66 4.87 -53.69 -0.26 -10.92 16 9 C 0.52 8.75 6.21 -10.99 -0.07 8.68 16 10 O -0.51 -11.25 14.50 5.56 0.08 -11.17 16 11 C -0.13 -1.66 0.44 -155.66 -0.07 -1.73 16 12 C -0.15 -1.52 8.13 37.16 0.30 -1.22 16 13 C -0.15 -1.27 8.13 37.16 0.30 -0.97 16 14 C 0.47 6.99 1.95 37.16 0.07 7.06 16 15 F -0.17 -2.96 15.88 2.25 0.04 -2.93 16 16 F -0.18 -2.34 16.28 2.25 0.04 -2.30 16 17 F -0.17 -2.81 15.88 2.25 0.04 -2.77 16 18 C 0.17 3.97 4.86 -3.71 -0.02 3.95 16 19 N -0.58 -14.26 2.99 -164.77 -0.49 -14.75 16 20 C -0.25 -6.90 8.57 -15.06 -0.13 -7.03 16 21 H 0.07 1.86 6.24 -52.49 -0.33 1.54 16 22 C 0.01 0.21 4.94 -17.43 -0.09 0.13 16 23 N -0.90 -26.47 11.23 55.49 0.62 -25.85 16 24 Si 0.90 22.52 29.58 -169.99 -5.03 17.49 16 25 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 28 H 0.05 1.02 7.44 -51.93 -0.39 0.63 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.06 1.25 7.63 -51.93 -0.40 0.85 16 31 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.39 4.38 7.44 -40.82 -0.30 4.08 16 36 H 0.08 0.70 7.56 -51.93 -0.39 0.31 16 37 H 0.08 0.65 7.80 -51.93 -0.41 0.24 16 38 H 0.08 1.00 7.80 -51.93 -0.41 0.59 16 39 H 0.07 0.71 7.80 -51.93 -0.41 0.31 16 40 H 0.08 0.57 7.80 -51.93 -0.41 0.16 16 41 H 0.08 0.55 7.56 -51.93 -0.39 0.16 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.09 2.63 6.15 -51.93 -0.32 2.31 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -32.73 354.63 -6.35 -39.08 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -6.63 Total: 1.19 kcal Atomic # 6 Polarization: 7.67 SS G_CDS: -0.10 Total: 7.57 kcal Atomic # 7 Polarization: -51.39 SS G_CDS: -0.13 Total: -51.52 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 9 Polarization: -8.11 SS G_CDS: 0.11 Total: -8.00 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.03 Total: 17.49 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.73 -6.35 -39.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132445991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.666 kcal (2) G-P(sol) polarization free energy of solvation -32.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds