Wall clock time and date at job start Tue Mar 31 2020 15:55:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.58831 * 2 1 4 4 C 1.53193 * 109.58389 * 239.71080 * 2 1 3 5 5 C 1.53043 * 109.31532 * 185.57695 * 4 2 1 6 6 C 1.53041 * 109.53447 * 61.36478 * 5 4 2 7 7 H 1.09002 * 109.49492 * 178.65035 * 6 5 4 8 8 N 1.46508 * 109.49554 * 58.59121 * 6 5 4 9 9 C 1.34775 * 119.99921 * 154.99480 * 8 6 5 10 10 O 1.21280 * 119.99970 * 0.02562 * 9 8 6 11 11 C 1.50698 * 120.00014 * 179.97438 * 9 8 6 12 12 C 1.53000 * 109.46821 * 60.00094 * 11 9 8 13 13 C 1.53005 * 109.47204 * 300.00670 * 11 9 8 14 14 C 1.52993 * 109.47179 * 180.02562 * 11 9 8 15 15 F 1.39894 * 109.47078 * 60.00241 * 14 11 9 16 16 F 1.39893 * 109.47167 * 299.99890 * 14 11 9 17 17 F 1.39905 * 109.46784 * 180.02562 * 14 11 9 18 18 C 1.53190 * 109.31664 * 298.63632 * 6 5 4 19 19 N 1.46926 * 108.77223 * 54.63697 * 18 6 5 20 20 C 1.36936 * 120.63362 * 126.36933 * 19 18 6 21 21 H 1.07995 * 120.00462 * 209.02581 * 20 19 18 22 22 C 1.38820 * 119.99803 * 29.02586 * 20 19 18 23 23 N 1.31622 * 119.99617 * 15.02728 * 22 20 19 24 24 Si 1.86796 * 120.00021 * 195.02242 * 22 20 19 25 25 H 1.48504 * 109.47086 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.47169 * 120.00172 * 24 22 20 27 27 H 1.48500 * 109.47308 * 239.99776 * 24 22 20 28 28 H 1.08997 * 109.47019 * 180.28593 * 1 2 3 29 29 H 1.09008 * 109.46716 * 300.28597 * 1 2 3 30 30 H 1.09001 * 109.47281 * 60.28326 * 1 2 3 31 31 H 1.09007 * 109.49318 * 65.62948 * 4 2 1 32 32 H 1.08996 * 109.50389 * 305.53439 * 4 2 1 33 33 H 1.09007 * 109.45771 * 301.35284 * 5 4 2 34 34 H 1.08994 * 109.45316 * 181.38586 * 5 4 2 35 35 H 0.97003 * 119.99524 * 334.99849 * 8 6 5 36 36 H 1.08999 * 109.47194 * 180.02562 * 12 11 9 37 37 H 1.09004 * 109.47440 * 299.99986 * 12 11 9 38 38 H 1.08998 * 109.47471 * 60.00489 * 12 11 9 39 39 H 1.09003 * 109.46757 * 299.99580 * 13 11 9 40 40 H 1.09001 * 109.46975 * 59.99538 * 13 11 9 41 41 H 1.08993 * 109.46850 * 179.97438 * 13 11 9 42 42 H 1.08999 * 109.58839 * 174.41838 * 18 6 5 43 43 H 1.08992 * 109.58862 * 294.84817 * 18 6 5 44 44 H 0.97000 * 119.99724 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0269 0.0000 4 6 2.0435 -0.7280 -1.2463 5 6 3.5675 -0.8467 -1.1713 6 6 3.9569 -1.6659 0.0614 7 1 5.0411 -1.7703 0.1011 8 7 3.3404 -2.9926 -0.0185 9 6 3.8970 -4.0344 0.6305 10 8 4.9079 -3.8736 1.2811 11 6 3.2626 -5.3989 0.5489 12 6 3.2182 -5.8540 -0.9112 13 6 1.8392 -5.3338 1.1062 14 6 4.0860 -6.3940 1.3690 15 9 4.1261 -5.9776 2.7039 16 9 5.3876 -6.4537 0.8598 17 9 3.4973 -7.6609 1.2926 18 6 3.4651 -0.9486 1.3225 19 7 2.0226 -0.7011 1.1936 20 6 1.1537 -1.1162 2.1671 21 1 0.1360 -1.3704 1.9101 22 6 1.5809 -1.2101 3.4846 23 7 2.7039 -0.6322 3.8550 24 14 0.5619 -2.1566 4.7317 25 1 -0.6463 -2.7082 4.0673 26 1 1.3712 -3.2699 5.2895 27 1 0.1511 -1.2450 5.8295 28 1 -0.3633 -1.0276 0.0051 29 1 -0.3633 0.5183 0.8875 30 1 -0.3634 0.5094 -0.8925 31 1 1.7659 -0.1642 -2.1370 32 1 1.6029 -1.7238 -1.2935 33 1 4.0061 0.1486 -1.0992 34 1 3.9375 -1.3425 -2.0686 35 1 2.5317 -3.1210 -0.5386 36 1 2.7590 -6.8408 -0.9704 37 1 2.6314 -5.1450 -1.4952 38 1 4.2322 -5.9005 -1.3084 39 1 1.8708 -5.0095 2.1464 40 1 1.2524 -4.6247 0.5223 41 1 1.3803 -6.3206 1.0467 42 1 3.6518 -1.5745 2.1952 43 1 3.9904 0.0001 1.4316 44 1 3.0026 -0.6981 4.7755 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132445994.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:11 Heat of formation + Delta-G solvation = -197.140776 kcal Electronic energy + Delta-G solvation = -30769.444579 eV Core-core repulsion = 26306.237491 eV Total energy + Delta-G solvation = -4463.207088 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -51.17957 -48.65588 -48.62271 -41.34401 -39.33853 -36.44562 -35.78432 -34.46805 -32.01165 -31.66786 -28.47305 -27.86361 -27.21396 -26.77753 -24.46150 -23.80503 -22.13299 -21.37536 -20.37567 -19.76879 -19.39919 -18.70625 -18.20016 -17.45634 -17.07352 -16.48041 -16.12357 -15.85675 -15.65100 -15.38649 -15.36954 -15.03814 -14.97094 -14.81340 -14.76218 -14.74652 -14.48347 -14.33916 -14.01239 -13.82008 -13.55534 -13.40140 -13.17780 -12.98341 -12.85141 -12.62401 -12.52566 -12.43178 -12.38596 -12.28793 -12.07508 -12.02265 -11.54049 -11.19919 -11.02186 -10.86406 -10.50920 -9.98749 -8.55115 -7.79503 -5.24148 1.40449 1.44068 1.50012 1.51916 1.58105 2.10366 2.51890 2.60515 2.97508 3.13069 3.37608 3.65000 3.66723 3.67758 3.79914 4.05447 4.13328 4.22164 4.51985 4.55285 4.57553 4.65324 4.66363 4.69713 4.77947 4.85433 4.99762 5.05303 5.07776 5.11575 5.11981 5.16504 5.31239 5.36033 5.61383 5.64104 5.69012 5.76798 5.78382 6.46856 6.55307 7.21516 7.24429 7.96435 8.46872 9.25689 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.012305 B = 0.006364 C = 0.005059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2274.909963 B = 4398.685888 C = 5533.554453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.152 3.848 3 H 0.010 0.990 4 C -0.118 4.118 5 C -0.110 4.110 6 C 0.128 3.872 7 H 0.063 0.937 8 N -0.675 5.675 9 C 0.519 3.481 10 O -0.579 6.579 11 C -0.122 4.122 12 C -0.140 4.140 13 C -0.144 4.144 14 C 0.466 3.534 15 F -0.194 7.194 16 F -0.182 7.182 17 F -0.171 7.171 18 C 0.171 3.829 19 N -0.592 5.592 20 C -0.228 4.228 21 H 0.083 0.917 22 C -0.055 4.055 23 N -0.938 5.938 24 Si 0.939 3.061 25 H -0.251 1.251 26 H -0.307 1.307 27 H -0.300 1.300 28 H 0.056 0.944 29 H 0.032 0.968 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.411 0.589 36 H 0.103 0.897 37 H 0.109 0.891 38 H 0.071 0.929 39 H 0.041 0.959 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.047 0.953 43 H -0.007 1.007 44 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.393 -9.297 -16.345 19.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.047 3.953 3 H 0.028 0.972 4 C -0.157 4.157 5 C -0.148 4.148 6 C 0.022 3.978 7 H 0.081 0.919 8 N -0.326 5.326 9 C 0.304 3.696 10 O -0.459 6.459 11 C -0.127 4.127 12 C -0.197 4.197 13 C -0.201 4.201 14 C 0.412 3.588 15 F -0.176 7.176 16 F -0.164 7.164 17 F -0.152 7.152 18 C 0.044 3.956 19 N -0.316 5.316 20 C -0.358 4.358 21 H 0.100 0.900 22 C -0.250 4.250 23 N -0.585 5.585 24 Si 0.770 3.230 25 H -0.174 1.174 26 H -0.236 1.236 27 H -0.228 1.228 28 H 0.075 0.925 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.109 0.891 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.108 0.892 35 H 0.249 0.751 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.090 0.910 39 H 0.060 0.940 40 H 0.122 0.878 41 H 0.125 0.875 42 H 0.066 0.934 43 H 0.011 0.989 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -2.649 -9.162 -15.751 18.414 hybrid contribution 0.020 -0.243 1.963 1.978 sum -2.630 -9.405 -13.788 16.896 Atomic orbital electron populations 1.21728 0.94557 1.01604 1.00695 1.20791 0.94256 0.93119 0.87142 0.97236 1.21958 0.94464 1.01326 0.97950 1.21669 0.97507 0.99737 0.95859 1.21523 0.96282 0.82192 0.97807 0.91851 1.45512 1.29432 1.07273 1.50347 1.20134 0.84023 0.86483 0.78980 1.90762 1.27249 1.85591 1.42267 1.22136 0.98089 0.91122 1.01324 1.22028 1.04943 1.05095 0.87671 1.21972 0.90587 1.06138 1.01450 1.20195 0.78863 0.81207 0.78554 1.93183 1.96433 1.90223 1.37726 1.93153 1.39959 1.96498 1.86764 1.93159 1.83650 1.42275 1.96144 1.20842 0.84341 0.95205 0.95238 1.44261 1.02044 1.65308 1.19999 1.19466 0.95072 1.35097 0.86205 0.89998 1.25699 0.98717 1.01558 0.98984 1.70162 1.25261 1.47004 1.16091 0.85598 0.79181 0.78107 0.80142 1.17406 1.23564 1.22755 0.92482 0.94893 0.90707 0.89132 0.91254 0.91152 0.89241 0.75079 0.87836 0.87256 0.91033 0.93998 0.87769 0.87502 0.93429 0.98928 0.95153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 7.94 71.98 0.57 -3.36 16 2 C 0.15 5.28 3.50 44.97 0.16 5.44 16 3 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 4 C -0.12 -2.89 5.20 30.67 0.16 -2.73 16 5 C -0.11 -2.85 5.59 30.62 0.17 -2.68 16 6 C 0.13 4.56 2.81 45.07 0.13 4.69 16 7 H 0.06 2.44 7.58 -2.39 -0.02 2.42 16 8 N -0.67 -21.11 4.70 -442.15 -2.08 -23.19 16 9 C 0.52 18.51 6.22 87.66 0.54 19.05 16 10 O -0.58 -26.78 14.50 -3.03 -0.04 -26.82 16 11 C -0.12 -3.31 0.44 -52.93 -0.02 -3.33 16 12 C -0.14 -2.33 8.13 71.98 0.58 -1.74 16 13 C -0.14 -3.60 8.13 71.98 0.58 -3.02 16 14 C 0.47 14.83 1.95 71.98 0.14 14.97 16 15 F -0.19 -7.77 15.88 44.97 0.71 -7.06 16 16 F -0.18 -6.14 15.88 44.97 0.71 -5.43 16 17 F -0.17 -4.51 16.28 44.97 0.73 -3.78 16 18 C 0.17 8.15 4.89 86.36 0.42 8.57 16 19 N -0.59 -26.62 2.91 -675.24 -1.96 -28.58 16 20 C -0.23 -11.45 8.61 84.04 0.72 -10.73 16 21 H 0.08 3.87 6.20 -2.91 -0.02 3.85 16 22 C -0.05 -3.06 4.96 84.86 0.42 -2.64 16 23 N -0.94 -57.46 11.14 21.65 0.24 -57.22 16 24 Si 0.94 45.46 29.58 68.60 2.03 47.49 16 25 H -0.25 -10.86 7.11 99.48 0.71 -10.16 16 26 H -0.31 -15.72 7.11 99.48 0.71 -15.02 16 27 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 28 H 0.06 1.69 7.40 -2.39 -0.02 1.67 16 29 H 0.03 1.17 7.66 -2.38 -0.02 1.16 16 30 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.09 1.68 8.14 -2.38 -0.02 1.67 16 32 H 0.07 1.52 6.40 -2.39 -0.02 1.51 16 33 H 0.07 1.89 8.14 -2.38 -0.02 1.87 16 34 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.41 10.08 5.61 -92.71 -0.52 9.56 16 36 H 0.10 1.26 7.80 -2.39 -0.02 1.25 16 37 H 0.11 1.24 7.56 -2.38 -0.02 1.22 16 38 H 0.07 1.26 7.80 -2.39 -0.02 1.24 16 39 H 0.04 1.38 7.80 -2.39 -0.02 1.36 16 40 H 0.10 2.21 7.56 -2.39 -0.02 2.19 16 41 H 0.11 1.98 7.80 -2.39 -0.02 1.96 16 42 H 0.05 2.78 6.06 -2.39 -0.01 2.76 16 43 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 44 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -73.73 350.95 5.43 -68.30 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.50 Total: 13.79 kcal Atomic # 6 Polarization: 17.91 SS G_CDS: 4.59 Total: 22.50 kcal Atomic # 7 Polarization: -105.19 SS G_CDS: -3.80 Total: -108.99 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -0.04 Total: -26.82 kcal Atomic # 9 Polarization: -18.42 SS G_CDS: 2.16 Total: -16.26 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -73.73 5.43 -68.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132445994.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.845 kcal (2) G-P(sol) polarization free energy of solvation -73.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.296 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds