Wall clock time and date at job start Tue Mar 31 2020 16:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.44554 * 2 1 4 4 C 1.53035 * 109.46137 * 240.02874 * 2 1 3 5 5 C 1.53195 * 109.31200 * 178.61273 * 4 2 1 6 6 N 1.46931 * 108.77110 * 54.63842 * 5 4 2 7 7 C 1.34776 * 120.62930 * 126.37290 * 6 5 4 8 8 O 1.21275 * 120.00127 * 180.02562 * 7 6 5 9 9 C 1.50700 * 119.99953 * 0.02562 * 7 6 5 10 10 C 1.53004 * 109.47371 * 180.02562 * 9 7 6 11 11 C 1.52993 * 109.47287 * 180.02562 * 10 9 7 12 12 F 1.39897 * 109.47116 * 60.00425 * 11 10 9 13 13 F 1.39905 * 109.46809 * 180.02562 * 11 10 9 14 14 F 1.39901 * 109.47188 * 299.99818 * 11 10 9 15 15 C 1.46919 * 118.74092 * 306.38691 * 6 5 4 16 16 C 1.53045 * 109.45681 * 119.96178 * 2 1 3 17 17 H 1.09000 * 109.52739 * 61.42112 * 16 2 1 18 18 C 1.53000 * 109.49689 * 301.33571 * 16 2 1 19 19 N 1.46499 * 109.46840 * 175.16149 * 18 16 2 20 20 C 1.36936 * 120.00002 * 180.02562 * 19 18 16 21 21 H 1.08004 * 120.00140 * 0.02562 * 20 19 18 22 22 C 1.38811 * 120.00367 * 180.02562 * 20 19 18 23 23 N 1.31619 * 119.99972 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00444 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.46864 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47259 * 119.99588 * 24 22 20 27 27 H 1.48495 * 109.47205 * 239.99955 * 24 22 20 28 28 H 1.09002 * 109.47420 * 300.03954 * 1 2 3 29 29 H 1.09003 * 109.46607 * 60.03869 * 1 2 3 30 30 H 1.08998 * 109.47276 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.49551 * 58.66578 * 4 2 1 32 32 H 1.08993 * 109.49844 * 298.56651 * 4 2 1 33 33 H 1.08998 * 109.59148 * 294.85230 * 5 4 2 34 34 H 1.08995 * 109.70304 * 174.49327 * 5 4 2 35 35 H 1.09003 * 109.47752 * 300.00572 * 9 7 6 36 36 H 1.09004 * 109.46783 * 60.00627 * 9 7 6 37 37 H 1.09003 * 109.46994 * 300.00846 * 10 9 7 38 38 H 1.09009 * 109.46806 * 59.99998 * 10 9 7 39 39 H 1.08999 * 109.58985 * 293.82483 * 15 6 5 40 40 H 1.09000 * 109.70846 * 173.46818 * 15 6 5 41 41 H 1.09002 * 109.47398 * 295.16475 * 18 16 2 42 42 H 1.09001 * 109.47194 * 55.16655 * 18 16 2 43 43 H 0.97000 * 120.00420 * 0.02562 * 19 18 16 44 44 H 0.96996 * 120.00586 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8929 1.0278 0.0000 4 6 2.0399 -0.7208 -1.2500 5 6 3.5714 -0.6886 -1.2641 6 7 4.0678 -1.2488 0.0003 7 6 4.9615 -2.2577 0.0003 8 8 5.3632 -2.7118 1.0506 9 6 5.4614 -2.8216 -1.3047 10 6 6.4582 -3.9481 -1.0251 11 6 6.9663 -4.5201 -2.3500 12 9 7.5982 -3.5095 -3.0825 13 9 7.8773 -5.5506 -2.0943 14 9 5.8875 -5.0237 -3.0848 15 6 3.5714 -0.6885 1.2644 16 6 2.0398 -0.7207 1.2502 17 1 1.6978 -1.7556 1.2391 18 6 1.5027 -0.0187 2.4990 19 7 1.8948 -0.7748 3.6909 20 6 1.5239 -0.3350 4.9336 21 1 0.9418 0.5692 5.0349 22 6 1.8959 -1.0511 6.0630 23 7 2.6048 -2.1532 5.9396 24 14 1.3892 -0.4515 7.7581 25 1 0.6030 0.8013 7.6254 26 1 0.5601 -1.4887 8.4227 27 1 2.6023 -0.1899 8.5736 28 1 -0.3634 0.5144 0.8896 29 1 -0.3633 0.5133 -0.8904 30 1 -0.3634 -1.0276 0.0005 31 1 1.6573 -0.2208 -2.1398 32 1 1.6979 -1.7556 -1.2381 33 1 3.9144 0.3409 -1.3672 34 1 3.9438 -1.2831 -2.0983 35 1 4.6208 -3.2144 -1.8767 36 1 5.9533 -2.0342 -1.8759 37 1 7.2989 -3.5557 -0.4529 38 1 5.9660 -4.7354 -0.4540 39 1 3.9143 0.3410 1.3675 40 1 3.9416 -1.2823 2.1002 41 1 1.9155 0.9886 2.5556 42 1 0.4154 0.0367 2.4454 43 1 2.4173 -1.5870 3.6000 44 1 2.8644 -2.6538 6.7287 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132741075.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:12:46 Heat of formation + Delta-G solvation = -219.097531 kcal Electronic energy + Delta-G solvation = -28140.046503 eV Core-core repulsion = 23675.887298 eV Total energy + Delta-G solvation = -4464.159205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 4.89 seconds Orbital eigenvalues (eV) -51.09053 -48.59704 -48.55688 -41.40450 -39.28868 -36.62125 -35.13373 -34.75236 -33.49506 -31.49471 -29.56096 -28.30219 -26.84571 -24.99563 -24.41615 -23.34629 -22.56838 -21.14663 -20.12985 -19.54582 -19.30620 -19.08908 -18.69960 -17.39832 -16.99476 -16.88805 -16.74613 -15.68681 -15.59961 -15.53254 -15.43508 -15.26443 -15.02839 -15.00482 -14.81440 -14.71481 -14.68682 -14.32924 -14.18652 -14.05879 -13.84066 -13.45742 -13.05621 -12.97544 -12.77706 -12.75655 -12.62562 -12.56620 -12.40344 -12.13176 -11.96157 -11.90413 -11.76383 -11.31664 -11.16469 -10.97563 -10.78718 -9.63918 -8.99864 -7.95091 -5.25133 1.45033 1.46763 1.56823 1.57187 1.66252 2.03583 2.54930 2.82043 2.99895 3.09784 3.38127 3.52355 3.68051 3.81572 3.85633 3.90945 3.97162 4.08492 4.23196 4.28903 4.36692 4.49178 4.60006 4.61008 4.64397 4.76621 4.80021 4.81687 4.87653 4.97939 4.99485 5.10224 5.15475 5.25998 5.30268 5.45810 5.48708 5.55439 5.60234 6.25921 6.42370 7.14281 7.31410 8.08456 8.30119 9.28564 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.014134 B = 0.003043 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1980.550364 B = 9198.667958 C =10773.043517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.079 4.079 3 H 0.083 0.917 4 C -0.124 4.124 5 C 0.097 3.903 6 N -0.607 5.607 7 C 0.506 3.494 8 O -0.589 6.589 9 C -0.132 4.132 10 C -0.151 4.151 11 C 0.463 3.537 12 F -0.182 7.182 13 F -0.191 7.191 14 F -0.184 7.184 15 C 0.126 3.874 16 C -0.088 4.088 17 H 0.050 0.950 18 C 0.156 3.844 19 N -0.748 5.748 20 C -0.244 4.244 21 H 0.078 0.922 22 C -0.079 4.079 23 N -0.972 5.972 24 Si 0.975 3.025 25 H -0.262 1.262 26 H -0.293 1.293 27 H -0.294 1.294 28 H 0.047 0.953 29 H 0.079 0.921 30 H 0.045 0.955 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.089 0.911 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.114 0.886 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.050 0.950 41 H 0.022 0.978 42 H 0.032 0.968 43 H 0.370 0.630 44 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.030 1.894 -26.038 26.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.162 4.162 5 C -0.024 4.024 6 N -0.339 5.339 7 C 0.295 3.705 8 O -0.470 6.470 9 C -0.172 4.172 10 C -0.190 4.190 11 C 0.409 3.591 12 F -0.164 7.164 13 F -0.172 7.172 14 F -0.165 7.165 15 C 0.003 3.997 16 C -0.107 4.107 17 H 0.068 0.932 18 C 0.030 3.970 19 N -0.391 5.391 20 C -0.376 4.376 21 H 0.096 0.904 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.804 3.196 25 H -0.187 1.187 26 H -0.220 1.220 27 H -0.222 1.222 28 H 0.066 0.934 29 H 0.098 0.902 30 H 0.064 0.936 31 H 0.129 0.871 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.132 0.868 38 H 0.128 0.872 39 H 0.087 0.913 40 H 0.069 0.931 41 H 0.040 0.960 42 H 0.050 0.950 43 H 0.202 0.798 44 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 4.151 1.796 -25.439 25.838 hybrid contribution 0.136 -0.503 1.512 1.599 sum 4.287 1.293 -23.927 24.343 Atomic orbital electron populations 1.21859 0.94510 1.01641 1.02295 1.21096 0.96301 0.99657 0.92782 0.89894 1.21988 0.94572 1.01360 0.98237 1.22196 0.94805 1.00992 0.84361 1.48255 1.42520 1.34903 1.08229 1.21089 0.78673 0.79152 0.91584 1.90780 1.59371 1.61056 1.35790 1.21667 1.01103 0.99254 0.95141 1.22579 1.02906 1.01196 0.92298 1.20432 0.75306 0.75859 0.87492 1.93186 1.83088 1.60114 1.80008 1.93188 1.68747 1.61066 1.94208 1.93188 1.55338 1.88095 1.79923 1.21361 0.93954 0.98290 0.86070 1.21559 0.94026 0.99488 0.95672 0.93153 1.20929 0.97105 0.93873 0.85131 1.42685 1.65044 1.29319 1.02012 1.19697 1.26618 1.06234 0.85030 0.90362 1.25634 1.01601 0.97997 1.01862 1.69866 1.44321 1.19022 1.29036 0.85046 0.77088 0.77690 0.79777 1.18652 1.22045 1.22166 0.93437 0.90232 0.93579 0.87070 0.92078 0.89232 0.86483 0.85148 0.84690 0.86771 0.87183 0.91278 0.93098 0.95999 0.95015 0.79819 0.94143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.81 71.98 0.63 -2.29 16 2 C -0.08 -1.64 2.23 -10.77 -0.02 -1.66 16 3 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 4 C -0.12 -1.71 5.36 30.67 0.16 -1.55 16 5 C 0.10 1.29 6.34 86.36 0.55 1.84 16 6 N -0.61 -14.83 2.97 -818.92 -2.43 -17.26 16 7 C 0.51 13.49 7.70 87.66 0.67 14.16 16 8 O -0.59 -22.82 15.40 -3.01 -0.05 -22.87 16 9 C -0.13 -1.98 3.80 29.85 0.11 -1.87 16 10 C -0.15 -2.57 4.55 30.59 0.14 -2.43 16 11 C 0.46 7.39 3.16 71.98 0.23 7.62 16 12 F -0.18 -2.84 16.80 44.97 0.76 -2.08 16 13 F -0.19 -3.64 17.32 44.97 0.78 -2.86 16 14 F -0.18 -2.98 16.80 44.97 0.76 -2.23 16 15 C 0.13 4.19 5.51 86.37 0.48 4.66 16 16 C -0.09 -2.77 1.92 -10.71 -0.02 -2.79 16 17 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 18 C 0.16 6.22 5.41 86.38 0.47 6.69 16 19 N -0.75 -39.65 5.38 -343.45 -1.85 -41.50 16 20 C -0.24 -14.08 9.99 84.03 0.84 -13.24 16 21 H 0.08 4.29 7.83 -2.91 -0.02 4.26 16 22 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 23 N -0.97 -62.69 13.06 21.65 0.28 -62.41 16 24 Si 0.98 47.60 29.55 68.60 2.03 49.63 16 25 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 26 H -0.29 -14.27 7.11 99.48 0.71 -13.56 16 27 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 28 H 0.05 1.12 6.30 -2.39 -0.02 1.10 16 29 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.11 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.12 0.78 5.93 -2.39 -0.01 0.77 16 35 H 0.13 1.35 7.35 -2.39 -0.02 1.33 16 36 H 0.14 1.25 7.60 -2.39 -0.02 1.23 16 37 H 0.11 2.06 8.10 -2.39 -0.02 2.04 16 38 H 0.11 2.11 8.10 -2.38 -0.02 2.09 16 39 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 40 H 0.05 2.25 6.21 -2.39 -0.01 2.24 16 41 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.03 1.25 6.15 -2.39 -0.01 1.24 16 43 H 0.37 21.54 6.89 -92.71 -0.64 20.90 16 44 H 0.25 15.60 8.31 -92.71 -0.77 14.83 16 Total: -1.00 -77.24 360.92 5.36 -71.88 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.38 Total: 24.80 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: 4.71 Total: 4.90 kcal Atomic # 7 Polarization: -117.17 SS G_CDS: -4.00 Total: -121.17 kcal Atomic # 8 Polarization: -22.82 SS G_CDS: -0.05 Total: -22.87 kcal Atomic # 9 Polarization: -9.46 SS G_CDS: 2.29 Total: -7.17 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -77.24 5.36 -71.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741075.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.216 kcal (2) G-P(sol) polarization free energy of solvation -77.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.89 seconds