Wall clock time and date at job start Tue Mar 31 2020 16:14:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34778 * 120.63351 * 233.63167 * 6 5 4 8 8 O 1.21282 * 120.00258 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99707 * 359.97438 * 7 6 5 10 10 C 1.53001 * 109.47063 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 F 1.39892 * 109.47382 * 60.00081 * 11 10 9 13 13 F 1.39906 * 109.46755 * 180.02562 * 11 10 9 14 14 F 1.39897 * 109.47006 * 299.99993 * 11 10 9 15 15 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08995 * 109.49919 * 298.61631 * 16 2 1 18 18 C 1.53006 * 109.49435 * 58.68107 * 16 2 1 19 19 N 1.46495 * 109.46960 * 185.00197 * 18 16 2 20 20 C 1.36936 * 119.99962 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00154 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31613 * 120.00067 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99963 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47150 * 89.99707 * 24 22 20 26 26 H 1.48494 * 109.47551 * 209.99975 * 24 22 20 27 27 H 1.48501 * 109.47141 * 330.00183 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 32 32 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 33 33 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 34 34 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 35 35 H 1.08996 * 109.47770 * 299.99990 * 9 7 6 36 36 H 1.09003 * 109.47015 * 60.00571 * 9 7 6 37 37 H 1.09005 * 109.47047 * 300.00358 * 10 9 7 38 38 H 1.08997 * 109.47010 * 60.00266 * 10 9 7 39 39 H 1.09003 * 109.59222 * 186.59958 * 15 6 5 40 40 H 1.09006 * 109.70276 * 66.24587 * 15 6 5 41 41 H 1.09001 * 109.46991 * 304.99842 * 18 16 2 42 42 H 1.09000 * 109.47170 * 64.99839 * 18 16 2 43 43 H 0.97002 * 120.00280 * 359.97438 * 19 18 16 44 44 H 0.96999 * 119.99848 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9609 -2.2586 0.0005 8 8 5.3627 -2.7129 -1.0497 9 6 5.4604 -2.8225 1.3057 10 6 6.4570 -3.9493 1.0263 11 6 6.9637 -4.5222 2.3514 12 9 5.8842 -5.0257 3.0850 13 9 7.8754 -5.5522 2.0958 14 9 7.5954 -3.5123 3.0849 15 6 3.5714 -0.6891 -1.2639 16 6 2.0399 -0.7210 -1.2500 17 1 1.6971 -1.7556 -1.2385 18 6 1.5031 -0.0189 -2.4990 19 7 1.8919 -0.7773 -3.6906 20 6 1.5215 -0.3373 -4.9333 21 1 0.9424 0.5685 -5.0350 22 6 1.8904 -1.0557 -6.0624 23 7 1.5340 -0.6330 -7.2568 24 14 2.8927 -2.6221 -5.8866 25 1 1.9769 -3.7833 -5.7513 26 1 3.7455 -2.8018 -7.0889 27 1 3.7526 -2.5268 -4.6796 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.6569 -0.2207 2.1399 32 1 1.6973 -1.7556 1.2384 33 1 3.9411 -1.2850 2.0988 34 1 3.9142 0.3405 1.3677 35 1 5.9523 -2.0354 1.8771 36 1 4.6195 -3.2152 1.8774 37 1 5.9646 -4.7364 0.4551 38 1 7.2979 -3.5571 0.4544 39 1 3.9416 -1.2851 -2.0981 40 1 3.9145 0.3401 -1.3695 41 1 0.4160 0.0393 -2.4442 42 1 1.9184 0.9872 -2.5571 43 1 2.4124 -1.5908 -3.5993 44 1 1.7921 -1.1348 -8.0458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132741077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:22 Heat of formation + Delta-G solvation = -194.418331 kcal Electronic energy + Delta-G solvation = -28279.034341 eV Core-core repulsion = 23815.945307 eV Total energy + Delta-G solvation = -4463.089034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 10.82 seconds Orbital eigenvalues (eV) -50.44553 -47.93168 -47.92913 -40.49575 -38.29258 -35.23094 -34.12637 -33.84810 -31.96293 -30.32750 -28.75580 -27.41104 -25.63584 -23.67408 -23.05286 -22.58715 -21.17727 -20.17336 -19.32751 -18.91232 -18.54940 -18.04420 -17.52073 -16.56785 -16.15255 -16.04275 -14.96304 -14.92771 -14.82144 -14.50791 -14.36139 -14.26955 -14.12927 -14.08619 -14.05495 -13.96574 -13.54769 -13.30974 -13.13196 -12.79665 -12.67730 -12.58173 -12.09851 -11.99131 -11.87554 -11.80853 -11.69506 -11.30320 -11.03060 -10.91087 -10.69976 -10.39476 -10.20702 -10.07779 -9.84639 -9.54616 -8.88677 -8.69674 -7.20462 -5.74572 -3.10147 2.34581 2.44687 2.82381 3.43199 3.46535 3.50048 3.51766 3.63451 3.71829 4.25146 4.42899 4.51675 4.56177 4.63518 4.70495 4.71827 4.90814 4.98729 5.12527 5.20978 5.23065 5.38000 5.46190 5.51216 5.56486 5.57988 5.66053 5.72305 5.80296 5.81385 5.97726 6.06569 6.21108 6.30290 6.32552 6.42743 6.68774 6.74298 7.26086 8.00751 8.01009 8.44401 9.23497 9.96322 10.15372 11.43697 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.003482 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.799432 B = 8039.079739 C = 9753.073088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 H 0.073 0.927 4 C -0.130 4.130 5 C 0.104 3.896 6 N -0.609 5.609 7 C 0.515 3.485 8 O -0.534 6.534 9 C -0.145 4.145 10 C -0.152 4.152 11 C 0.453 3.547 12 F -0.184 7.184 13 F -0.183 7.183 14 F -0.185 7.185 15 C 0.117 3.883 16 C -0.106 4.106 17 H 0.074 0.926 18 C 0.163 3.837 19 N -0.757 5.757 20 C -0.245 4.245 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.879 3.121 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.273 1.273 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.036 0.964 42 H 0.027 0.973 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.110 -2.975 26.334 27.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.103 4.103 3 H 0.092 0.908 4 C -0.168 4.168 5 C -0.019 4.019 6 N -0.342 5.342 7 C 0.303 3.697 8 O -0.410 6.410 9 C -0.185 4.185 10 C -0.191 4.191 11 C 0.399 3.601 12 F -0.166 7.166 13 F -0.164 7.164 14 F -0.166 7.166 15 C -0.005 4.005 16 C -0.126 4.126 17 H 0.092 0.908 18 C 0.035 3.965 19 N -0.403 5.403 20 C -0.375 4.375 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.709 3.291 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.198 1.198 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.116 0.884 40 H 0.089 0.911 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.194 0.806 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 7.243 -3.084 25.614 26.797 hybrid contribution 0.738 -1.199 0.254 1.431 sum 7.981 -4.283 25.868 27.408 Atomic orbital electron populations 1.21890 0.94729 1.02034 1.01968 1.21083 0.96171 0.99444 0.93609 0.90828 1.21997 0.94404 1.01729 0.98661 1.21812 0.95009 0.99487 0.85572 1.48161 1.42908 1.35104 1.08016 1.20230 0.79229 0.79634 0.90640 1.90780 1.57485 1.59451 1.33325 1.21650 1.00342 0.98824 0.97673 1.22637 1.02918 1.01159 0.92379 1.20598 0.75556 0.76156 0.87777 1.93186 1.55310 1.88077 1.79999 1.93203 1.68360 1.60684 1.94144 1.93183 1.83102 1.60310 1.80023 1.21771 0.93830 0.99386 0.85488 1.21779 0.94365 1.00837 0.95595 0.90804 1.20710 0.97440 0.94079 0.84266 1.42772 1.66131 1.28777 1.02595 1.19035 1.28570 1.07989 0.81884 0.89226 1.24649 1.00531 0.98654 0.95103 1.69699 1.50870 1.40629 0.97041 0.86616 0.80593 0.84596 0.77247 1.21142 1.21688 1.19838 0.92763 0.93061 0.91445 0.90589 0.91406 0.89932 0.90963 0.87598 0.87572 0.86295 0.86303 0.88351 0.91097 0.94604 0.95522 0.80562 0.93072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 8.82 37.16 0.33 -1.23 16 2 C -0.08 -0.89 2.23 -90.57 -0.20 -1.09 16 3 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 4 C -0.13 -1.05 5.36 -26.61 -0.14 -1.19 16 5 C 0.10 0.81 6.34 -3.71 -0.02 0.78 16 6 N -0.61 -7.13 2.97 -172.77 -0.51 -7.64 16 7 C 0.52 6.41 7.70 -10.99 -0.08 6.33 16 8 O -0.53 -9.11 15.40 5.56 0.09 -9.02 16 9 C -0.14 -1.14 3.80 -27.88 -0.11 -1.24 16 10 C -0.15 -1.24 4.55 -26.73 -0.12 -1.36 16 11 C 0.45 3.72 3.16 37.16 0.12 3.84 16 12 F -0.18 -1.59 16.80 2.25 0.04 -1.55 16 13 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 14 F -0.18 -1.56 16.80 2.25 0.04 -1.53 16 15 C 0.12 1.74 5.52 -3.71 -0.02 1.72 16 16 C -0.11 -1.53 1.92 -90.50 -0.17 -1.71 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 18 C 0.16 3.01 5.41 -4.04 -0.02 2.99 16 19 N -0.76 -18.06 5.18 -59.91 -0.31 -18.37 16 20 C -0.25 -7.00 10.47 -15.06 -0.16 -7.16 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.29 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.10 16 23 N -0.93 -29.79 13.97 55.49 0.78 -29.02 16 24 Si 0.88 22.98 27.73 -169.99 -4.71 18.26 16 25 H -0.28 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.67 7.11 56.52 0.40 -7.27 16 27 H -0.27 -6.91 6.52 56.52 0.37 -6.54 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.80 6.29 -51.92 -0.33 0.47 16 31 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.11 0.63 7.60 -51.93 -0.39 0.23 16 36 H 0.11 0.66 7.35 -51.93 -0.38 0.28 16 37 H 0.12 1.02 8.10 -51.93 -0.42 0.60 16 38 H 0.12 0.98 8.10 -51.93 -0.42 0.56 16 39 H 0.10 1.84 6.22 -51.93 -0.32 1.52 16 40 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.67 6.14 -51.93 -0.32 0.35 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.36 8.66 4.76 -40.82 -0.19 8.47 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.55 16 LS Contribution 357.81 15.07 5.39 5.39 Total: -1.00 -34.16 357.81 -6.36 -40.52 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.48 Total: 3.87 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: -0.70 Total: 0.77 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: -0.05 Total: -55.03 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: 0.09 Total: -9.02 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.11 Total: -4.76 kcal Atomic # 14 Polarization: 22.98 SS G_CDS: -4.71 Total: 18.26 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.16 -6.36 -40.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -153.896 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -194.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 10.82 seconds