Wall clock time and date at job start Tue Mar 31 2020 16:14:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.46300 * 2 1 4 4 C 1.53043 * 109.44748 * 119.96831 * 2 1 3 5 5 C 1.53191 * 109.31132 * 181.37889 * 4 2 1 6 6 N 1.46921 * 108.77411 * 305.35957 * 5 4 2 7 7 C 1.34778 * 120.63351 * 233.63167 * 6 5 4 8 8 O 1.21282 * 120.00258 * 179.97438 * 7 6 5 9 9 C 1.50698 * 119.99707 * 359.97438 * 7 6 5 10 10 C 1.53001 * 109.47063 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47143 * 180.02562 * 10 9 7 12 12 F 1.39892 * 109.47382 * 60.00081 * 11 10 9 13 13 F 1.39906 * 109.46755 * 180.02562 * 11 10 9 14 14 F 1.39897 * 109.47006 * 299.99993 * 11 10 9 15 15 C 1.46925 * 118.73795 * 53.61317 * 6 5 4 16 16 C 1.53046 * 109.46008 * 240.02476 * 2 1 3 17 17 H 1.08995 * 109.49919 * 298.61631 * 16 2 1 18 18 C 1.53006 * 109.49435 * 58.68107 * 16 2 1 19 19 N 1.46495 * 109.46960 * 185.00197 * 18 16 2 20 20 C 1.36936 * 119.99962 * 180.02562 * 19 18 16 21 21 H 1.07996 * 120.00154 * 359.97438 * 20 19 18 22 22 C 1.38815 * 120.00066 * 179.97438 * 20 19 18 23 23 N 1.31613 * 120.00067 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99963 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47150 * 89.99707 * 24 22 20 26 26 H 1.48494 * 109.47551 * 209.99975 * 24 22 20 27 27 H 1.48501 * 109.47141 * 330.00183 * 24 22 20 28 28 H 1.08992 * 109.47480 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47171 * 300.00294 * 1 2 3 30 30 H 1.09008 * 109.46811 * 59.99958 * 1 2 3 31 31 H 1.09004 * 109.49679 * 301.32867 * 4 2 1 32 32 H 1.08994 * 109.49744 * 61.42383 * 4 2 1 33 33 H 1.09002 * 109.58035 * 185.57574 * 5 4 2 34 34 H 1.09002 * 109.58818 * 65.15445 * 5 4 2 35 35 H 1.08996 * 109.47770 * 299.99990 * 9 7 6 36 36 H 1.09003 * 109.47015 * 60.00571 * 9 7 6 37 37 H 1.09005 * 109.47047 * 300.00358 * 10 9 7 38 38 H 1.08997 * 109.47010 * 60.00266 * 10 9 7 39 39 H 1.09003 * 109.59222 * 186.59958 * 15 6 5 40 40 H 1.09006 * 109.70276 * 66.24587 * 15 6 5 41 41 H 1.09001 * 109.46991 * 304.99842 * 18 16 2 42 42 H 1.09000 * 109.47170 * 64.99839 * 18 16 2 43 43 H 0.97002 * 120.00280 * 359.97438 * 19 18 16 44 44 H 0.96999 * 119.99848 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0396 -0.7209 1.2502 5 6 3.5711 -0.6890 1.2645 6 7 4.0675 -1.2494 0.0004 7 6 4.9609 -2.2586 0.0005 8 8 5.3627 -2.7129 -1.0497 9 6 5.4604 -2.8225 1.3057 10 6 6.4570 -3.9493 1.0263 11 6 6.9637 -4.5222 2.3514 12 9 5.8842 -5.0257 3.0850 13 9 7.8754 -5.5522 2.0958 14 9 7.5954 -3.5123 3.0849 15 6 3.5714 -0.6891 -1.2639 16 6 2.0399 -0.7210 -1.2500 17 1 1.6971 -1.7556 -1.2385 18 6 1.5031 -0.0189 -2.4990 19 7 1.8919 -0.7773 -3.6906 20 6 1.5215 -0.3373 -4.9333 21 1 0.9424 0.5685 -5.0350 22 6 1.8904 -1.0557 -6.0624 23 7 1.5340 -0.6330 -7.2568 24 14 2.8927 -2.6221 -5.8866 25 1 1.9769 -3.7833 -5.7513 26 1 3.7455 -2.8018 -7.0889 27 1 3.7526 -2.5268 -4.6796 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 1.6569 -0.2207 2.1399 32 1 1.6973 -1.7556 1.2384 33 1 3.9411 -1.2850 2.0988 34 1 3.9142 0.3405 1.3677 35 1 5.9523 -2.0354 1.8771 36 1 4.6195 -3.2152 1.8774 37 1 5.9646 -4.7364 0.4551 38 1 7.2979 -3.5571 0.4544 39 1 3.9416 -1.2851 -2.0981 40 1 3.9145 0.3401 -1.3695 41 1 0.4160 0.0393 -2.4442 42 1 1.9184 0.9872 -2.5571 43 1 2.4124 -1.5908 -3.5993 44 1 1.7921 -1.1348 -8.0458 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132741077.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:05 Heat of formation + Delta-G solvation = -216.561468 kcal Electronic energy + Delta-G solvation = -28279.994539 eV Core-core repulsion = 23815.945307 eV Total energy + Delta-G solvation = -4464.049233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 19.56 seconds Orbital eigenvalues (eV) -51.10373 -48.61159 -48.57086 -41.44610 -39.34135 -36.77546 -35.16548 -34.77512 -33.68795 -31.86728 -29.57815 -28.45325 -26.94453 -24.71540 -24.40424 -23.36982 -22.55877 -21.28598 -20.15168 -19.66292 -19.55589 -19.23537 -18.73124 -17.43047 -17.03536 -16.91955 -16.73633 -15.94502 -15.70825 -15.51716 -15.38832 -15.26074 -15.02938 -14.94514 -14.81969 -14.72763 -14.71394 -14.55873 -14.23750 -14.11198 -13.90439 -13.53386 -13.38568 -13.07162 -12.79485 -12.77682 -12.64321 -12.58474 -12.42287 -12.25265 -11.98758 -11.89696 -11.78613 -11.33715 -11.22377 -11.03772 -10.82412 -9.67845 -9.30952 -8.07574 -5.39254 1.32187 1.35306 1.41870 1.53166 1.64159 2.00703 2.42282 2.80616 2.98276 3.08336 3.24594 3.47555 3.54342 3.76389 3.81705 3.84444 3.95242 4.03924 4.07685 4.26482 4.33006 4.45327 4.56988 4.59035 4.62648 4.74306 4.77845 4.79784 4.84482 4.94634 4.98486 5.07812 5.13933 5.21790 5.26448 5.45013 5.52931 5.58291 5.72791 6.17584 6.38273 7.03774 7.09170 7.81463 7.97846 9.14141 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013027 B = 0.003482 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2148.799432 B = 8039.079739 C = 9753.073088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.079 4.079 3 H 0.082 0.918 4 C -0.123 4.123 5 C 0.097 3.903 6 N -0.607 5.607 7 C 0.508 3.492 8 O -0.590 6.590 9 C -0.134 4.134 10 C -0.151 4.151 11 C 0.462 3.538 12 F -0.184 7.184 13 F -0.191 7.191 14 F -0.183 7.183 15 C 0.121 3.879 16 C -0.093 4.093 17 H 0.060 0.940 18 C 0.158 3.842 19 N -0.761 5.761 20 C -0.231 4.231 21 H 0.063 0.937 22 C -0.056 4.056 23 N -0.980 5.980 24 Si 0.945 3.055 25 H -0.278 1.278 26 H -0.293 1.293 27 H -0.265 1.265 28 H 0.048 0.952 29 H 0.077 0.923 30 H 0.046 0.954 31 H 0.109 0.891 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.038 0.962 42 H 0.027 0.973 43 H 0.361 0.639 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.509 -3.154 30.370 31.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.098 4.098 3 H 0.101 0.899 4 C -0.161 4.161 5 C -0.024 4.024 6 N -0.339 5.339 7 C 0.298 3.702 8 O -0.471 6.471 9 C -0.173 4.173 10 C -0.189 4.189 11 C 0.408 3.592 12 F -0.166 7.166 13 F -0.173 7.173 14 F -0.165 7.165 15 C -0.002 4.002 16 C -0.112 4.112 17 H 0.078 0.922 18 C 0.032 3.968 19 N -0.407 5.407 20 C -0.362 4.362 21 H 0.081 0.919 22 C -0.248 4.248 23 N -0.631 5.631 24 Si 0.773 3.227 25 H -0.204 1.204 26 H -0.219 1.219 27 H -0.191 1.191 28 H 0.067 0.933 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.107 0.893 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.130 0.870 38 H 0.133 0.867 39 H 0.072 0.928 40 H 0.091 0.909 41 H 0.056 0.944 42 H 0.045 0.955 43 H 0.194 0.806 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 7.623 -3.243 29.742 30.875 hybrid contribution 0.551 -1.032 -0.955 1.510 sum 8.174 -4.275 28.788 30.229 Atomic orbital electron populations 1.21870 0.94549 1.01794 1.02252 1.21090 0.96255 0.99725 0.92777 0.89935 1.21989 0.94521 1.01471 0.98158 1.22199 0.94813 1.00995 0.84344 1.48251 1.42524 1.34827 1.08251 1.21049 0.78555 0.79084 0.91557 1.90757 1.59436 1.61203 1.35729 1.21676 1.01150 0.99263 0.95229 1.22582 1.02930 1.01194 0.92222 1.20470 0.75300 0.75865 0.87572 1.93187 1.55262 1.88106 1.79999 1.93189 1.68716 1.61140 1.94210 1.93188 1.83110 1.60183 1.79991 1.21449 0.93899 0.98726 0.86167 1.21633 0.94096 1.00000 0.95521 0.92180 1.20934 0.97647 0.93963 0.84285 1.42859 1.65957 1.29219 1.02660 1.19076 1.26690 1.06541 0.83851 0.91890 1.25352 1.02512 1.02106 0.94864 1.69849 1.53039 1.42392 0.97853 0.85563 0.79127 0.80885 0.77112 1.20407 1.21919 1.19082 0.93271 0.90394 0.93543 0.87228 0.91796 0.86461 0.89270 0.84764 0.85066 0.87035 0.86741 0.92795 0.90883 0.94417 0.95495 0.80572 0.93270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.82 71.98 0.63 -2.08 16 2 C -0.08 -1.46 2.23 -10.76 -0.02 -1.49 16 3 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 4 C -0.12 -1.43 5.36 30.67 0.16 -1.26 16 5 C 0.10 1.06 6.34 86.36 0.55 1.60 16 6 N -0.61 -12.87 2.97 -818.91 -2.43 -15.30 16 7 C 0.51 11.82 7.70 87.66 0.67 12.49 16 8 O -0.59 -20.32 15.40 -3.03 -0.05 -20.37 16 9 C -0.13 -1.66 3.80 29.85 0.11 -1.54 16 10 C -0.15 -2.18 4.55 30.59 0.14 -2.04 16 11 C 0.46 6.53 3.16 71.98 0.23 6.75 16 12 F -0.18 -2.66 16.80 44.97 0.76 -1.91 16 13 F -0.19 -3.33 17.32 44.97 0.78 -2.55 16 14 F -0.18 -2.58 16.80 44.97 0.76 -1.82 16 15 C 0.12 3.53 5.52 86.36 0.48 4.01 16 16 C -0.09 -2.60 1.92 -10.71 -0.02 -2.63 16 17 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 18 C 0.16 5.88 5.41 86.38 0.47 6.35 16 19 N -0.76 -37.01 5.18 -343.45 -1.78 -38.79 16 20 C -0.23 -13.55 10.47 84.03 0.88 -12.67 16 21 H 0.06 3.98 8.06 -2.91 -0.02 3.95 16 22 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 23 N -0.98 -64.39 13.97 21.65 0.30 -64.09 16 24 Si 0.94 48.85 27.73 68.60 1.90 50.75 16 25 H -0.28 -13.95 7.11 99.48 0.71 -13.25 16 26 H -0.29 -15.14 7.11 99.48 0.71 -14.44 16 27 H -0.27 -13.27 6.52 99.48 0.65 -12.62 16 28 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.05 1.04 6.29 -2.38 -0.01 1.03 16 31 H 0.11 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.12 0.52 5.93 -2.39 -0.01 0.51 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.13 0.95 7.60 -2.39 -0.02 0.93 16 36 H 0.13 1.02 7.35 -2.39 -0.02 1.00 16 37 H 0.11 1.80 8.10 -2.38 -0.02 1.79 16 38 H 0.11 1.78 8.10 -2.39 -0.02 1.76 16 39 H 0.05 2.08 6.22 -2.39 -0.01 2.06 16 40 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.04 1.42 6.14 -2.39 -0.01 1.40 16 42 H 0.03 1.01 8.14 -2.39 -0.02 1.00 16 43 H 0.36 17.58 4.76 -92.71 -0.44 17.13 16 44 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -77.98 357.81 5.50 -72.48 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.52 Total: 17.10 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: 4.75 Total: 4.50 kcal Atomic # 7 Polarization: -114.27 SS G_CDS: -3.91 Total: -118.18 kcal Atomic # 8 Polarization: -20.32 SS G_CDS: -0.05 Total: -20.37 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 2.29 Total: -6.28 kcal Atomic # 14 Polarization: 48.85 SS G_CDS: 1.90 Total: 50.75 kcal Total: -77.98 5.50 -72.48 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741077.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.083 kcal (2) G-P(sol) polarization free energy of solvation -77.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -216.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 19.56 seconds