Wall clock time and date at job start Tue Mar 31 2020 16:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46084 * 2 1 4 4 C 1.53046 * 109.45877 * 119.97312 * 2 1 3 5 5 C 1.53183 * 109.31431 * 58.64073 * 4 2 1 6 6 N 1.46935 * 108.77653 * 54.63472 * 5 4 2 7 7 C 1.34775 * 120.63332 * 126.36807 * 6 5 4 8 8 O 1.21277 * 120.00161 * 180.02562 * 7 6 5 9 9 C 1.50704 * 119.99715 * 0.02562 * 7 6 5 10 10 C 1.53001 * 109.46813 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46830 * 180.02562 * 10 9 7 12 12 F 1.39895 * 109.47412 * 59.99756 * 11 10 9 13 13 F 1.39896 * 109.46693 * 180.02562 * 11 10 9 14 14 F 1.39901 * 109.47056 * 299.99846 * 11 10 9 15 15 C 1.46931 * 118.73608 * 306.39271 * 6 5 4 16 16 C 1.53046 * 109.44674 * 240.03255 * 2 1 3 17 17 H 1.09002 * 109.49271 * 181.39705 * 16 2 1 18 18 C 1.53002 * 109.49707 * 61.30660 * 16 2 1 19 19 N 1.46494 * 109.46991 * 174.99977 * 18 16 2 20 20 C 1.36943 * 119.99828 * 179.97438 * 19 18 16 21 21 H 1.07989 * 119.99919 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99607 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99757 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00529 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47570 * 89.99671 * 24 22 20 26 26 H 1.48500 * 109.47170 * 210.00127 * 24 22 20 27 27 H 1.48505 * 109.46799 * 329.99609 * 24 22 20 28 28 H 1.08994 * 109.46608 * 299.99850 * 1 2 3 29 29 H 1.08995 * 109.46659 * 60.00108 * 1 2 3 30 30 H 1.09002 * 109.46537 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.49048 * 178.59203 * 4 2 1 32 32 H 1.08988 * 109.49532 * 298.68684 * 4 2 1 33 33 H 1.09002 * 109.59073 * 174.41995 * 5 4 2 34 34 H 1.08994 * 109.58919 * 294.70656 * 5 4 2 35 35 H 1.08996 * 109.47150 * 299.99775 * 9 7 6 36 36 H 1.09005 * 109.46935 * 60.00332 * 9 7 6 37 37 H 1.09003 * 109.47357 * 299.99579 * 10 9 7 38 38 H 1.08992 * 109.47117 * 59.99812 * 10 9 7 39 39 H 1.08996 * 109.58268 * 173.39637 * 15 6 5 40 40 H 1.09003 * 109.58664 * 293.67445 * 15 6 5 41 41 H 1.08998 * 109.46766 * 294.99732 * 18 16 2 42 42 H 1.08993 * 109.47158 * 54.99376 * 18 16 2 43 43 H 0.96998 * 120.00225 * 359.97438 * 19 18 16 44 44 H 0.97000 * 120.00323 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 1.4994 -2.1542 1.2642 6 7 1.8621 -2.8090 -0.0001 7 6 2.5157 -3.9876 -0.0003 8 8 2.8099 -4.5178 -1.0506 9 6 2.8810 -4.6467 1.3048 10 6 3.6100 -5.9625 1.0251 11 6 3.9804 -6.6320 2.3501 12 9 2.8173 -6.8900 3.0833 13 9 4.6474 -7.8348 2.0943 14 9 4.8156 -5.7830 3.0841 15 6 1.4991 -2.1541 -1.2643 16 6 2.0396 -0.7209 -1.2502 17 1 3.1293 -0.7431 -1.2385 18 6 1.5566 0.0195 -2.4990 19 7 2.1418 -0.5998 -3.6907 20 6 1.8504 -0.1037 -4.9334 21 1 1.1888 0.7438 -5.0349 22 6 2.4053 -0.6902 -6.0625 23 7 2.1247 -0.2137 -7.2569 24 14 3.5490 -2.1566 -5.8870 25 1 2.7556 -3.4112 -5.9295 26 1 4.5314 -2.1542 -7.0006 27 1 4.2694 -2.0702 -4.5913 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1296 -0.7432 1.2380 32 1 1.6961 -0.1936 2.1397 33 1 1.9380 -2.7019 2.0983 34 1 0.4147 -2.1346 1.3700 35 1 3.5316 -3.9849 1.8765 36 1 1.9749 -4.8482 1.8762 37 1 2.9591 -6.6242 0.4536 38 1 4.5160 -5.7615 0.4534 39 1 1.9375 -2.7018 -2.0985 40 1 0.4142 -2.1367 -1.3685 41 1 0.4697 -0.0366 -2.5570 42 1 1.8641 1.0637 -2.4440 43 1 2.7357 -1.3613 -3.5996 44 1 2.5128 -0.6233 -8.0459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132741078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:07 Heat of formation + Delta-G solvation = -191.317081 kcal Electronic energy + Delta-G solvation = -28414.766554 eV Core-core repulsion = 23951.812000 eV Total energy + Delta-G solvation = -4462.954554 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 18.23 seconds Orbital eigenvalues (eV) -50.44497 -47.93366 -47.92615 -40.61529 -38.43169 -35.20191 -34.12794 -33.65294 -31.96195 -30.35077 -28.24317 -27.48216 -25.56073 -24.76984 -23.02173 -22.74051 -21.16931 -19.98574 -18.91641 -18.86484 -18.21491 -17.99927 -17.49440 -16.65627 -16.10352 -16.01759 -15.16014 -15.04203 -14.89754 -14.81194 -14.37347 -14.31145 -14.17399 -14.06981 -14.05536 -13.87651 -13.64600 -13.30276 -13.01822 -12.76697 -12.72121 -12.54087 -12.13138 -11.99399 -11.86283 -11.76294 -11.56401 -11.25230 -11.11510 -10.86564 -10.74106 -10.40306 -10.22424 -10.08277 -9.86509 -9.55172 -8.87382 -8.65693 -7.20996 -5.74777 -3.10427 2.34652 2.44695 2.82508 3.43560 3.46649 3.48425 3.51734 3.63580 3.71874 4.25273 4.43312 4.51987 4.56196 4.63172 4.70327 4.74623 4.90882 5.01257 5.11606 5.19553 5.22120 5.37952 5.39126 5.48440 5.55585 5.58491 5.61996 5.71904 5.75137 5.85064 5.93998 6.15472 6.18851 6.22752 6.36359 6.43270 6.64017 6.75040 7.26351 8.00715 8.00861 8.44225 9.23255 9.96099 10.15106 11.43495 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003512 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.870060 B = 7971.812085 C = 9679.399791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.076 0.924 4 C -0.130 4.130 5 C 0.103 3.897 6 N -0.608 5.608 7 C 0.515 3.485 8 O -0.534 6.534 9 C -0.145 4.145 10 C -0.152 4.152 11 C 0.453 3.547 12 F -0.185 7.185 13 F -0.183 7.183 14 F -0.184 7.184 15 C 0.117 3.883 16 C -0.106 4.106 17 H 0.073 0.927 18 C 0.165 3.835 19 N -0.757 5.757 20 C -0.245 4.245 21 H 0.090 0.910 22 C 0.006 3.994 23 N -0.934 5.934 24 Si 0.882 3.118 25 H -0.282 1.282 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.051 0.949 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.106 0.894 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.096 0.904 40 H 0.074 0.926 41 H 0.032 0.968 42 H 0.029 0.971 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.148 -8.091 26.319 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.104 4.104 3 H 0.094 0.906 4 C -0.168 4.168 5 C -0.020 4.020 6 N -0.341 5.341 7 C 0.303 3.697 8 O -0.411 6.411 9 C -0.185 4.185 10 C -0.191 4.191 11 C 0.399 3.601 12 F -0.166 7.166 13 F -0.164 7.164 14 F -0.166 7.166 15 C -0.004 4.004 16 C -0.126 4.126 17 H 0.091 0.909 18 C 0.037 3.963 19 N -0.403 5.403 20 C -0.375 4.375 21 H 0.108 0.892 22 C -0.189 4.189 23 N -0.582 5.582 24 Si 0.712 3.288 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.124 0.876 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.114 0.886 40 H 0.092 0.908 41 H 0.050 0.950 42 H 0.047 0.953 43 H 0.194 0.806 44 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.089 -8.251 25.598 26.895 hybrid contribution 0.931 -1.058 0.267 1.434 sum 0.842 -9.309 25.865 27.502 Atomic orbital electron populations 1.21999 0.95022 1.02009 1.02083 1.21068 0.96180 0.99511 0.93597 0.90554 1.21950 1.01191 0.94964 0.98682 1.21830 1.00749 0.93905 0.85520 1.48149 1.57063 1.20873 1.08003 1.20226 0.77796 0.81067 0.90635 1.90773 1.53671 1.63347 1.33322 1.21651 1.02927 0.96230 0.97680 1.22637 1.05952 0.98121 0.92377 1.20600 0.74548 0.77165 0.87777 1.93183 1.49027 1.94371 1.80031 1.93201 1.81292 1.47760 1.94138 1.93188 1.72758 1.70656 1.79984 1.21777 1.00340 0.92915 0.85413 1.21747 1.00860 0.94392 0.95610 0.90850 1.20663 0.96389 0.94970 0.84275 1.42780 1.57285 1.37643 1.02596 1.19036 1.24168 1.12439 0.81839 0.89212 1.24650 1.00141 0.99044 0.95110 1.69702 1.48278 1.43221 0.97029 0.86589 0.81380 0.83879 0.76939 1.20883 1.21731 1.20330 0.92975 0.91581 0.92465 0.91450 0.90591 0.90057 0.90700 0.87571 0.87610 0.86308 0.86290 0.88579 0.90804 0.95035 0.95269 0.80553 0.93066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.12 37.16 0.30 -1.21 16 2 C -0.08 -0.89 2.71 -90.57 -0.25 -1.14 16 3 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 4 C -0.13 -1.05 5.63 -26.61 -0.15 -1.20 16 5 C 0.10 0.80 5.87 -3.71 -0.02 0.78 16 6 N -0.61 -7.06 2.97 -172.77 -0.51 -7.58 16 7 C 0.52 6.38 7.70 -10.98 -0.08 6.29 16 8 O -0.53 -9.04 15.39 5.56 0.09 -8.96 16 9 C -0.14 -1.14 3.80 -27.88 -0.11 -1.24 16 10 C -0.15 -1.24 4.55 -26.73 -0.12 -1.36 16 11 C 0.45 3.72 3.16 37.16 0.12 3.84 16 12 F -0.18 -1.56 16.80 2.25 0.04 -1.52 16 13 F -0.18 -1.72 17.32 2.25 0.04 -1.68 16 14 F -0.18 -1.60 16.80 2.25 0.04 -1.56 16 15 C 0.12 1.72 5.04 -3.71 -0.02 1.70 16 16 C -0.11 -1.54 2.15 -90.50 -0.19 -1.73 16 17 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 18 C 0.16 3.05 5.19 -4.04 -0.02 3.03 16 19 N -0.76 -18.11 5.18 -59.92 -0.31 -18.42 16 20 C -0.25 -7.01 10.47 -15.06 -0.16 -7.17 16 21 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 22 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 23 N -0.93 -29.79 13.97 55.49 0.78 -29.01 16 24 Si 0.88 23.09 27.74 -169.99 -4.71 18.37 16 25 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.28 -6.97 6.52 56.52 0.37 -6.60 16 28 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.74 6.57 -51.93 -0.34 0.40 16 30 H 0.06 0.56 4.98 -51.93 -0.26 0.30 16 31 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.08 0.47 8.14 -51.94 -0.42 0.04 16 33 H 0.08 0.44 5.93 -51.93 -0.31 0.13 16 34 H 0.07 0.52 6.70 -51.93 -0.35 0.18 16 35 H 0.11 0.66 7.35 -51.93 -0.38 0.28 16 36 H 0.11 0.63 7.60 -51.93 -0.39 0.23 16 37 H 0.12 0.98 8.10 -51.93 -0.42 0.56 16 38 H 0.12 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.10 1.78 6.22 -51.93 -0.32 1.45 16 40 H 0.07 1.05 6.70 -51.93 -0.35 0.70 16 41 H 0.03 0.58 6.73 -51.93 -0.35 0.23 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.36 8.69 4.76 -40.82 -0.19 8.50 16 44 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 LS Contribution 351.75 15.07 5.30 5.30 Total: -1.00 -34.11 351.75 -6.28 -40.39 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -6.22 Total: 3.99 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.80 Total: 0.69 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: -0.05 Total: -55.02 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.11 Total: -4.77 kcal Atomic # 14 Polarization: 23.09 SS G_CDS: -4.71 Total: 18.37 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -34.11 -6.28 -40.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -150.927 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 18.23 seconds