Wall clock time and date at job start Tue Mar 31 2020 16:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.09002 * 109.46084 * 2 1 4 4 C 1.53046 * 109.45877 * 119.97312 * 2 1 3 5 5 C 1.53183 * 109.31431 * 58.64073 * 4 2 1 6 6 N 1.46935 * 108.77653 * 54.63472 * 5 4 2 7 7 C 1.34775 * 120.63332 * 126.36807 * 6 5 4 8 8 O 1.21277 * 120.00161 * 180.02562 * 7 6 5 9 9 C 1.50704 * 119.99715 * 0.02562 * 7 6 5 10 10 C 1.53001 * 109.46813 * 179.97438 * 9 7 6 11 11 C 1.53004 * 109.46830 * 180.02562 * 10 9 7 12 12 F 1.39895 * 109.47412 * 59.99756 * 11 10 9 13 13 F 1.39896 * 109.46693 * 180.02562 * 11 10 9 14 14 F 1.39901 * 109.47056 * 299.99846 * 11 10 9 15 15 C 1.46931 * 118.73608 * 306.39271 * 6 5 4 16 16 C 1.53046 * 109.44674 * 240.03255 * 2 1 3 17 17 H 1.09002 * 109.49271 * 181.39705 * 16 2 1 18 18 C 1.53002 * 109.49707 * 61.30660 * 16 2 1 19 19 N 1.46494 * 109.46991 * 174.99977 * 18 16 2 20 20 C 1.36943 * 119.99828 * 179.97438 * 19 18 16 21 21 H 1.07989 * 119.99919 * 359.97438 * 20 19 18 22 22 C 1.38807 * 119.99607 * 179.97438 * 20 19 18 23 23 N 1.31619 * 119.99757 * 179.97438 * 22 20 19 24 24 Si 1.86797 * 120.00529 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47570 * 89.99671 * 24 22 20 26 26 H 1.48500 * 109.47170 * 210.00127 * 24 22 20 27 27 H 1.48505 * 109.46799 * 329.99609 * 24 22 20 28 28 H 1.08994 * 109.46608 * 299.99850 * 1 2 3 29 29 H 1.08995 * 109.46659 * 60.00108 * 1 2 3 30 30 H 1.09002 * 109.46537 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.49048 * 178.59203 * 4 2 1 32 32 H 1.08988 * 109.49532 * 298.68684 * 4 2 1 33 33 H 1.09002 * 109.59073 * 174.41995 * 5 4 2 34 34 H 1.08994 * 109.58919 * 294.70656 * 5 4 2 35 35 H 1.08996 * 109.47150 * 299.99775 * 9 7 6 36 36 H 1.09005 * 109.46935 * 60.00332 * 9 7 6 37 37 H 1.09003 * 109.47357 * 299.99579 * 10 9 7 38 38 H 1.08992 * 109.47117 * 59.99812 * 10 9 7 39 39 H 1.08996 * 109.58268 * 173.39637 * 15 6 5 40 40 H 1.09003 * 109.58664 * 293.67445 * 15 6 5 41 41 H 1.08998 * 109.46766 * 294.99732 * 18 16 2 42 42 H 1.08993 * 109.47158 * 54.99376 * 18 16 2 43 43 H 0.96998 * 120.00225 * 359.97438 * 19 18 16 44 44 H 0.97000 * 120.00323 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7209 1.2500 5 6 1.4994 -2.1542 1.2642 6 7 1.8621 -2.8090 -0.0001 7 6 2.5157 -3.9876 -0.0003 8 8 2.8099 -4.5178 -1.0506 9 6 2.8810 -4.6467 1.3048 10 6 3.6100 -5.9625 1.0251 11 6 3.9804 -6.6320 2.3501 12 9 2.8173 -6.8900 3.0833 13 9 4.6474 -7.8348 2.0943 14 9 4.8156 -5.7830 3.0841 15 6 1.4991 -2.1541 -1.2643 16 6 2.0396 -0.7209 -1.2502 17 1 3.1293 -0.7431 -1.2385 18 6 1.5566 0.0195 -2.4990 19 7 2.1418 -0.5998 -3.6907 20 6 1.8504 -0.1037 -4.9334 21 1 1.1888 0.7438 -5.0349 22 6 2.4053 -0.6902 -6.0625 23 7 2.1247 -0.2137 -7.2569 24 14 3.5490 -2.1566 -5.8870 25 1 2.7556 -3.4112 -5.9295 26 1 4.5314 -2.1542 -7.0006 27 1 4.2694 -2.0702 -4.5913 28 1 -0.3632 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 3.1296 -0.7432 1.2380 32 1 1.6961 -0.1936 2.1397 33 1 1.9380 -2.7019 2.0983 34 1 0.4147 -2.1346 1.3700 35 1 3.5316 -3.9849 1.8765 36 1 1.9749 -4.8482 1.8762 37 1 2.9591 -6.6242 0.4536 38 1 4.5160 -5.7615 0.4534 39 1 1.9375 -2.7018 -2.0985 40 1 0.4142 -2.1367 -1.3685 41 1 0.4697 -0.0366 -2.5570 42 1 1.8641 1.0637 -2.4440 43 1 2.7357 -1.3613 -3.5996 44 1 2.5128 -0.6233 -8.0459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132741078.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:14:51 Heat of formation + Delta-G solvation = -213.601364 kcal Electronic energy + Delta-G solvation = -28415.732873 eV Core-core repulsion = 23951.812000 eV Total energy + Delta-G solvation = -4463.920873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.161 amu Computer time = 11.72 seconds Orbital eigenvalues (eV) -51.10305 -48.61178 -48.56955 -41.55889 -39.45769 -36.80139 -35.07079 -34.65585 -33.66570 -31.88013 -29.02149 -28.56619 -26.85869 -25.60932 -24.60089 -23.50364 -22.56793 -21.01679 -19.89259 -19.55963 -19.34628 -18.96198 -18.73545 -17.51975 -17.00353 -16.87488 -16.78064 -16.01019 -15.96387 -15.67019 -15.48641 -15.30426 -15.03137 -14.96129 -14.84093 -14.73383 -14.71335 -14.54941 -14.39569 -13.93829 -13.84808 -13.52821 -13.38611 -13.01548 -12.80978 -12.78768 -12.65646 -12.44031 -12.41950 -12.18663 -12.01014 -11.88781 -11.72146 -11.38367 -11.26874 -11.00595 -10.86355 -9.60970 -9.32254 -8.07940 -5.39797 1.31753 1.35262 1.39920 1.53582 1.64441 2.01003 2.41684 2.80773 2.98464 3.08429 3.24240 3.47629 3.54841 3.77305 3.81099 3.86079 3.95570 4.04028 4.10820 4.27048 4.32900 4.44212 4.52695 4.56330 4.62361 4.73600 4.76935 4.79048 4.82051 4.91442 5.02120 5.08112 5.18688 5.23790 5.30963 5.41185 5.50603 5.61378 5.72432 6.17258 6.38870 7.03261 7.09539 7.80843 7.97235 9.13760 Molecular weight = 322.16amu Principal moments of inertia in cm(-1) A = 0.013318 B = 0.003512 C = 0.002892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.870060 B = 7971.812085 C = 9679.399791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.081 4.081 3 H 0.078 0.922 4 C -0.124 4.124 5 C 0.095 3.905 6 N -0.605 5.605 7 C 0.508 3.492 8 O -0.590 6.590 9 C -0.134 4.134 10 C -0.150 4.150 11 C 0.462 3.538 12 F -0.183 7.183 13 F -0.191 7.191 14 F -0.184 7.184 15 C 0.122 3.878 16 C -0.094 4.094 17 H 0.059 0.941 18 C 0.160 3.840 19 N -0.762 5.762 20 C -0.231 4.231 21 H 0.063 0.937 22 C -0.056 4.056 23 N -0.980 5.980 24 Si 0.946 3.054 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.264 1.264 28 H 0.078 0.922 29 H 0.044 0.956 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.134 0.866 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.052 0.948 40 H 0.076 0.924 41 H 0.035 0.965 42 H 0.028 0.972 43 H 0.361 0.639 44 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.114 -8.553 30.336 31.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.100 4.100 3 H 0.096 0.904 4 C -0.161 4.161 5 C -0.025 4.025 6 N -0.337 5.337 7 C 0.298 3.702 8 O -0.471 6.471 9 C -0.173 4.173 10 C -0.189 4.189 11 C 0.408 3.592 12 F -0.165 7.165 13 F -0.173 7.173 14 F -0.166 7.166 15 C -0.001 4.001 16 C -0.114 4.114 17 H 0.077 0.923 18 C 0.034 3.966 19 N -0.407 5.407 20 C -0.362 4.362 21 H 0.081 0.919 22 C -0.248 4.248 23 N -0.631 5.631 24 Si 0.774 3.226 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.189 1.189 28 H 0.097 0.903 29 H 0.063 0.937 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.127 0.873 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.149 0.851 36 H 0.152 0.848 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.071 0.929 40 H 0.094 0.906 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.194 0.806 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.069 -8.689 29.707 30.952 hybrid contribution 0.831 -0.824 -0.937 1.499 sum 0.762 -9.512 28.769 30.311 Atomic orbital electron populations 1.21973 0.94218 1.02219 1.02394 1.21073 0.96775 0.99404 0.92744 0.90376 1.21947 1.01027 0.94989 0.98187 1.22215 1.02118 0.93847 0.84363 1.48230 1.56523 1.20753 1.08210 1.21035 0.76789 0.80868 0.91546 1.90751 1.55851 1.64801 1.35689 1.21677 1.04560 0.95835 0.95269 1.22582 1.05694 0.98427 0.92211 1.20476 0.74393 0.76773 0.87580 1.93187 1.48915 1.94361 1.80001 1.93187 1.81510 1.48355 1.94204 1.93189 1.72818 1.70585 1.79989 1.21452 1.00012 0.92574 0.86092 1.21607 0.99866 0.94377 0.95546 0.92281 1.20879 0.96295 0.95092 0.84304 1.42869 1.57457 1.37734 1.02671 1.19077 1.22350 1.10955 0.83803 0.91859 1.25349 1.02449 1.02131 0.94876 1.69849 1.50243 1.45157 0.97840 0.85553 0.79439 0.80281 0.77307 1.21040 1.21624 1.18917 0.90274 0.93699 0.92282 0.91755 0.87250 0.86590 0.89137 0.85100 0.84791 0.86723 0.87030 0.92897 0.90586 0.94725 0.95434 0.80575 0.93249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 8.12 71.98 0.58 -1.95 16 2 C -0.08 -1.49 2.71 -10.76 -0.03 -1.52 16 3 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 4 C -0.12 -1.44 5.63 30.67 0.17 -1.27 16 5 C 0.10 1.05 5.87 86.36 0.51 1.56 16 6 N -0.61 -12.75 2.97 -818.91 -2.43 -15.18 16 7 C 0.51 11.73 7.70 87.66 0.67 12.41 16 8 O -0.59 -20.12 15.39 -3.02 -0.05 -20.16 16 9 C -0.13 -1.66 3.80 29.85 0.11 -1.54 16 10 C -0.15 -2.17 4.55 30.60 0.14 -2.03 16 11 C 0.46 6.52 3.16 71.98 0.23 6.75 16 12 F -0.18 -2.57 16.80 44.97 0.76 -1.82 16 13 F -0.19 -3.33 17.32 44.97 0.78 -2.55 16 14 F -0.18 -2.67 16.80 44.97 0.76 -1.92 16 15 C 0.12 3.53 5.04 86.36 0.44 3.97 16 16 C -0.09 -2.65 2.15 -10.72 -0.02 -2.68 16 17 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 18 C 0.16 6.00 5.19 86.38 0.45 6.45 16 19 N -0.76 -37.10 5.18 -343.48 -1.78 -38.88 16 20 C -0.23 -13.58 10.47 84.03 0.88 -12.70 16 21 H 0.06 4.00 8.06 -2.92 -0.02 3.97 16 22 C -0.06 -3.44 5.50 84.86 0.47 -2.97 16 23 N -0.98 -64.34 13.97 21.65 0.30 -64.04 16 24 Si 0.95 48.97 27.74 68.60 1.90 50.87 16 25 H -0.28 -14.67 7.11 99.48 0.71 -13.96 16 26 H -0.29 -14.86 7.11 99.48 0.71 -14.16 16 27 H -0.26 -12.90 6.52 99.48 0.65 -12.25 16 28 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 29 H 0.04 0.94 6.57 -2.39 -0.02 0.93 16 30 H 0.06 0.97 4.98 -2.39 -0.01 0.96 16 31 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.12 0.54 5.93 -2.39 -0.01 0.53 16 34 H 0.09 0.80 6.70 -2.39 -0.02 0.78 16 35 H 0.13 1.02 7.35 -2.39 -0.02 1.01 16 36 H 0.13 0.95 7.60 -2.38 -0.02 0.93 16 37 H 0.11 1.77 8.10 -2.39 -0.02 1.75 16 38 H 0.11 1.80 8.10 -2.39 -0.02 1.78 16 39 H 0.05 2.01 6.22 -2.39 -0.01 1.99 16 40 H 0.08 2.13 6.70 -2.39 -0.02 2.11 16 41 H 0.03 1.29 6.73 -2.39 -0.02 1.28 16 42 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.36 17.60 4.76 -92.71 -0.44 17.16 16 44 H 0.26 16.17 8.31 -92.71 -0.77 15.40 16 Total: -1.00 -77.70 351.75 5.36 -72.34 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 0.53 Total: 16.87 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: 4.60 Total: 4.47 kcal Atomic # 7 Polarization: -114.19 SS G_CDS: -3.91 Total: -118.10 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.05 Total: -20.16 kcal Atomic # 9 Polarization: -8.57 SS G_CDS: 2.29 Total: -6.28 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.90 Total: 50.87 kcal Total: -77.70 5.36 -72.34 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132741078.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.261 kcal (2) G-P(sol) polarization free energy of solvation -77.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -218.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.340 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.73 seconds