Wall clock time and date at job start Tue Mar 31 2020 16:11:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.35364 * 116.99868 * 2 1 4 4 C 1.36095 * 125.57670 * 180.28944 * 3 2 1 5 5 C 1.39912 * 107.17717 * 180.16308 * 4 3 2 6 6 C 1.37824 * 106.67543 * 359.58269 * 5 4 3 7 7 C 1.46135 * 126.03033 * 180.29500 * 6 5 4 8 8 O 1.21762 * 119.99853 * 353.03453 * 7 6 5 9 9 N 1.34776 * 119.99952 * 173.03158 * 7 6 5 10 10 C 1.46931 * 120.63143 * 3.63922 * 9 7 6 11 11 C 1.52758 * 109.01036 * 233.58396 * 10 9 7 12 12 C 1.53038 * 109.38370 * 305.59231 * 11 10 9 13 13 H 1.09001 * 109.45723 * 181.26312 * 12 11 10 14 14 C 1.52997 * 109.44563 * 301.22241 * 12 11 10 15 15 C 1.53038 * 109.54153 * 61.23681 * 12 11 10 16 16 H 1.09005 * 109.49246 * 58.58995 * 15 12 11 17 17 C 1.53000 * 109.49633 * 178.68320 * 15 12 11 18 18 N 1.46500 * 109.46773 * 184.83708 * 17 15 12 19 19 C 1.36937 * 120.00103 * 180.02562 * 18 17 15 20 20 H 1.08004 * 119.99838 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00633 * 180.02562 * 19 18 17 22 22 N 1.31628 * 119.99881 * 0.02562 * 21 19 18 23 23 Si 1.86801 * 120.00528 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47121 * 89.99914 * 23 21 19 25 25 H 1.48501 * 109.47075 * 209.99887 * 23 21 19 26 26 H 1.48495 * 109.46994 * 329.99968 * 23 21 19 27 27 C 1.46924 * 120.63243 * 183.92358 * 9 7 6 28 28 O 1.34011 * 125.58302 * 359.97438 * 3 2 1 29 29 H 1.08997 * 109.47203 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46414 * 299.99539 * 1 2 3 31 31 H 1.08997 * 109.47025 * 59.98821 * 1 2 3 32 32 H 1.08006 * 126.41398 * 0.04682 * 4 3 2 33 33 H 1.08003 * 126.66003 * 179.83926 * 5 4 3 34 34 H 1.09004 * 109.58246 * 353.42081 * 10 9 7 35 35 H 1.09000 * 109.58160 * 113.84437 * 10 9 7 36 36 H 1.09002 * 109.56655 * 185.55156 * 11 10 9 37 37 H 1.09002 * 109.38639 * 65.51568 * 11 10 9 38 38 H 1.08999 * 109.47231 * 180.02562 * 14 12 11 39 39 H 1.08997 * 109.47355 * 300.06212 * 14 12 11 40 40 H 1.08997 * 109.47130 * 60.06789 * 14 12 11 41 41 H 1.08998 * 109.47523 * 304.83879 * 17 15 12 42 42 H 1.09000 * 109.46944 * 64.84116 * 17 15 12 43 43 H 0.97003 * 120.00059 * 0.02562 * 18 17 15 44 44 H 0.96995 * 120.00198 * 179.97438 * 22 21 19 45 45 H 1.08999 * 109.58608 * 246.15337 * 27 9 7 46 46 H 1.09004 * 109.58604 * 6.57868 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0436 1.2061 0.0000 4 6 3.3893 1.4091 -0.0056 5 6 3.5985 2.7925 0.0004 6 6 2.3522 3.3810 0.0000 7 6 2.0795 4.8167 -0.0010 8 8 2.9943 5.6101 0.1265 9 7 0.8156 5.2624 -0.1430 10 6 -0.3074 4.3178 -0.2180 11 6 -1.1198 4.6098 -1.4782 12 6 -1.5354 6.0827 -1.4848 13 1 -2.1342 6.2870 -2.3723 14 6 -2.3608 6.3846 -0.2324 15 6 -0.2863 6.9669 -1.4975 16 1 0.3148 6.7346 -2.3767 17 6 -0.7029 8.4385 -1.5372 18 7 0.4893 9.2802 -1.6659 19 6 0.3629 10.6426 -1.7213 20 1 -0.6156 11.0967 -1.6697 21 6 1.4924 11.4400 -1.8437 22 7 2.6850 10.8867 -1.9071 23 14 1.3201 13.2986 -1.9186 24 1 1.3790 13.8569 -0.5439 25 1 2.4260 13.8659 -2.7312 26 1 0.0182 13.6503 -2.5403 27 6 0.5350 6.7019 -0.2319 28 8 1.4265 2.3957 -0.0005 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3632 0.5138 0.8901 31 1 -0.3633 0.5140 -0.8899 32 1 4.1529 0.6453 -0.0115 33 1 4.5516 3.3005 0.0008 34 1 0.0752 3.2980 -0.2596 35 1 -0.9435 4.4362 0.6592 36 1 -2.0098 3.9806 -1.4927 37 1 -0.5113 4.3996 -2.3578 38 1 -2.6574 7.4334 -0.2369 39 1 -3.2505 5.7549 -0.2231 40 1 -1.7621 6.1807 0.6552 41 1 -1.3605 8.6072 -2.3900 42 1 -1.2291 8.6921 -0.6169 43 1 1.3682 8.8723 -1.7118 44 1 3.4743 11.4439 -1.9930 45 1 -0.0312 7.0186 0.6440 46 1 1.4731 7.2546 -0.2827 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133186271.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:11:21 Heat of formation + Delta-G solvation = -33.285799 kcal Electronic energy + Delta-G solvation = -28234.021411 eV Core-core repulsion = 24319.776348 eV Total energy + Delta-G solvation = -3914.245063 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 322.173 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -43.02724 -40.19943 -38.87723 -37.98973 -35.00959 -33.75881 -33.21284 -31.90476 -30.19508 -29.58009 -27.96335 -27.35259 -25.53732 -24.84005 -23.19083 -22.42218 -22.19650 -21.17831 -20.34428 -19.02562 -18.31393 -17.35501 -17.31855 -16.88844 -16.12804 -15.65959 -15.50984 -15.21527 -14.96553 -14.73072 -14.37271 -13.97521 -13.61835 -13.50247 -13.38939 -13.22667 -13.13554 -12.95458 -12.67223 -12.58401 -12.39457 -11.95416 -11.75988 -11.56098 -11.24623 -11.04387 -10.87242 -10.78006 -10.61129 -10.28702 -10.22613 -10.19147 -10.07478 -9.84809 -9.57508 -8.82187 -8.58777 -8.21507 -6.85849 -5.68803 -2.98668 0.93115 1.91299 2.18097 2.75918 3.08180 3.24072 3.48018 3.52452 3.54752 4.39225 4.58650 4.61192 4.63496 4.65373 4.78723 4.86109 4.90971 4.94956 5.16273 5.19278 5.25909 5.39125 5.51779 5.57691 5.61709 5.64389 5.65674 5.74752 5.81393 5.88966 5.94297 6.00983 6.11922 6.14991 6.23090 6.31871 6.34525 6.36788 6.56361 6.67292 6.78474 6.87711 6.90802 7.42698 7.75253 8.15071 8.48903 9.59819 10.17675 10.51815 11.53495 Molecular weight = 322.17amu Principal moments of inertia in cm(-1) A = 0.019522 B = 0.003130 C = 0.002761 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1433.940945 B = 8944.196495 C =10137.175833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.264 6.264 3 C 0.196 3.804 4 C -0.238 4.238 5 C -0.084 4.084 6 C -0.092 4.092 7 C 0.599 3.401 8 O -0.510 6.510 9 N -0.601 5.601 10 C 0.092 3.908 11 C -0.128 4.128 12 C -0.085 4.085 13 H 0.074 0.926 14 C -0.153 4.153 15 C -0.103 4.103 16 H 0.074 0.926 17 C 0.161 3.839 18 N -0.733 5.733 19 C -0.242 4.242 20 H 0.069 0.931 21 C -0.013 4.013 22 N -0.929 5.929 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.292 1.292 26 H -0.283 1.283 27 C 0.121 3.879 28 O -0.181 6.181 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.162 0.838 33 H 0.168 0.832 34 H 0.102 0.898 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.021 0.979 42 H 0.023 0.977 43 H 0.385 0.615 44 H 0.255 0.745 45 H 0.072 0.928 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.023 -24.941 4.362 26.560 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.178 6.178 3 C 0.101 3.899 4 C -0.258 4.258 5 C -0.104 4.104 6 C -0.142 4.142 7 C 0.387 3.613 8 O -0.387 6.387 9 N -0.333 5.333 10 C -0.030 4.030 11 C -0.166 4.166 12 C -0.104 4.104 13 H 0.093 0.907 14 C -0.210 4.210 15 C -0.122 4.122 16 H 0.093 0.907 17 C 0.033 3.967 18 N -0.378 5.378 19 C -0.373 4.373 20 H 0.087 0.913 21 C -0.209 4.209 22 N -0.577 5.577 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C 0.000 4.000 28 O -0.083 6.083 29 H 0.128 0.872 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.179 0.821 33 H 0.186 0.814 34 H 0.119 0.881 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.039 0.961 42 H 0.041 0.959 43 H 0.219 0.781 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -7.842 -24.458 4.428 26.064 hybrid contribution -0.050 0.765 -0.142 0.779 sum -7.891 -23.694 4.286 25.338 Atomic orbital electron populations 1.23187 0.76766 1.04953 1.02679 1.86393 1.23005 1.19144 1.89263 1.21074 0.89877 0.78774 1.00193 1.20770 0.92063 0.96870 1.16051 1.22006 0.97939 0.92478 0.98027 1.22133 0.86988 0.87269 1.17820 1.16551 0.83209 0.83913 0.77637 1.90973 1.43887 1.53534 1.50329 1.48038 1.05479 1.08359 1.71463 1.22195 0.88464 0.93657 0.98690 1.21867 0.99631 0.97226 0.97885 1.21083 0.96472 0.93712 0.99147 0.90727 1.21988 0.99091 1.02250 0.97675 1.21704 0.95757 0.96670 0.98097 0.90723 1.20673 0.90984 0.87048 0.97976 1.42424 1.03533 1.03053 1.88795 1.19188 0.92836 0.82691 1.42582 0.91262 1.24757 0.95323 0.97879 1.02947 1.69675 0.97023 1.34062 1.56979 0.86210 0.76810 0.85840 0.77429 1.21743 1.21807 1.20849 1.21831 1.02318 0.78106 0.97777 1.84196 1.36504 1.14133 1.73422 0.87222 0.91798 0.91757 0.82086 0.81444 0.88144 0.91036 0.90902 0.91550 0.91670 0.93161 0.92476 0.96124 0.95898 0.78104 0.93473 0.91031 0.87656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.09 10.74 101.05 1.09 1.18 16 2 O -0.26 -2.29 10.55 -41.02 -0.43 -2.72 16 3 C 0.20 2.05 7.86 29.96 0.24 2.29 16 4 C -0.24 -2.47 10.89 -39.73 -0.43 -2.91 16 5 C -0.08 -1.03 10.67 -39.11 -0.42 -1.44 16 6 C -0.09 -1.26 6.88 -36.57 -0.25 -1.51 16 7 C 0.60 9.94 7.65 -13.09 -0.10 9.84 16 8 O -0.51 -10.47 16.30 5.13 0.08 -10.39 16 9 N -0.60 -8.96 2.98 -174.77 -0.52 -9.48 16 10 C 0.09 1.02 5.82 -3.93 -0.02 1.00 16 11 C -0.13 -1.33 5.61 -26.84 -0.15 -1.48 16 12 C -0.09 -1.05 2.71 -90.58 -0.25 -1.29 16 13 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 14 C -0.15 -1.71 8.11 37.16 0.30 -1.41 16 15 C -0.10 -1.68 2.15 -90.50 -0.19 -1.87 16 16 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 17 C 0.16 3.22 5.19 -4.04 -0.02 3.20 16 18 N -0.73 -18.93 5.38 -59.91 -0.32 -19.25 16 19 C -0.24 -6.89 9.99 -15.06 -0.15 -7.04 16 20 H 0.07 1.91 7.83 -52.48 -0.41 1.49 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 22 N -0.93 -29.04 13.06 55.49 0.72 -28.31 16 23 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 24 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 25 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 26 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 27 C 0.12 2.06 5.04 -3.71 -0.02 2.04 16 28 O -0.18 -2.05 6.54 -19.26 -0.13 -2.17 16 29 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.16 1.30 8.06 -52.48 -0.42 0.88 16 33 H 0.17 1.90 8.06 -52.48 -0.42 1.48 16 34 H 0.10 1.04 3.75 -55.48 -0.21 0.84 16 35 H 0.07 0.72 6.70 -51.93 -0.35 0.37 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.80 6.57 -51.93 -0.34 0.46 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.65 4.99 -51.93 -0.26 0.39 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.02 0.46 6.72 -51.93 -0.35 0.11 16 43 H 0.38 10.65 6.89 -40.82 -0.28 10.37 16 44 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 45 H 0.07 1.17 6.69 -51.93 -0.35 0.82 16 46 H 0.11 2.23 6.23 -51.93 -0.32 1.90 16 LS Contribution 364.56 15.07 5.49 5.49 Total: -1.00 -34.02 364.56 -7.26 -41.28 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -6.65 Total: 7.57 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -0.48 Total: 0.11 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.12 Total: -57.04 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -0.48 Total: -15.28 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.02 -7.26 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133186271.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.993 kcal (2) G-P(sol) polarization free energy of solvation -34.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.85 seconds